mRNA_H-paniculata_contig9116.16945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Match: D8LM64_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM64_ECTSI) HSP 1 Score: 678 bits (1749), Expect = 1.160e-233 Identity = 341/456 (74.78%), Postives = 390/456 (85.53%), Query Frame = 1
Query: 1 GAHVSYQPFDVEDYQEAADDDD-QIPSQFPPITETADDRKNWPKSCPFLHLNWGEFAISDKRRFIKISYYFWHFLTFTLLWNMMSAIVTSLISPSPKEETVFFAFVFAFLGFWWFFFGHFRLVYHAMRYRKSGLYFLYQLETAVLFFLACYMIFSAMGNLTMLLAPLAPGSAVPVRQNPEMATVLLGIAATLWMTVMLFCFYFIRKVHYFKNLPLPIEREIWVEESRPNLARSSGKKLSEMITNLFSDKLDKPYEPTKCGMLQGKDLWLQGMITLETVYVEYRADVHVFDHLVHERFHYQDVLAIRKTGPSCITFQLVHPTKRQLEDLEMEFDFSDGKVRDALYKVASKLWRRVGRNMDLLAKERSKKVTKMRKAGRAGDIADEEPDLVEAFQRARKLETRERLNDHMVTYKDWQKILEGVKLHVLKEGENLVTTGDDFTAIFHVAQGRIEVKRTM 1365
GAHVSYQPFDVEDYQ+AA D+D IP QFPPI+ETADDRKNWPKSCPFLH+ + E AI DKR+FI ++Y FWHFL +TLL+NM +A+VTSLISPSPKE+ VFFAF+ AF+GFWWFFFGHFRL+YHAMRYRK+GLY L+QLET VLFF+A Y IFSAMGN+T LLAPLAPGSAVPVRQNP +LLGIA+ LW V++FCFYFIRKVHY+KNLPL IER+I+ +E + KK S MIT+LF +KLDK + PTKCGMLQGKDLWLQGMITLET+YVEYRADVHVFDHLVHERF YQDVLAI+ +G S ITFQLVHPTKR LEDLEMEFDFSD +VRD LYKVA+KLWRRVGRN DLL +ER+ K+ KMRK GRA DI DE PDLVEAF +AR++ETRERLNDHMVTYKDWQ+ILE VK+HVL G+NLV TGDDFT I+HVAQG+IEV +
Sbjct: 70 GAHVSYQPFDVEDYQDAASDEDGDIPMQFPPISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLFNMCAAVVTSLISPSPKEDQVFFAFLLAFIGFWWFFFGHFRLLYHAMRYRKNGLYLLHQLETTVLFFIAVYQIFSAMGNMTQLLAPLAPGSAVPVRQNPMAGVILLGIASGLWFVVLMFCFYFIRKVHYYKNLPLSIERDIYRKEFSA-IHPEPKKKCSTMITDLFREKLDKAHPPTKCGMLQGKDLWLQGMITLETLYVEYRADVHVFDHLVHERFSYQDVLAIKTSGKSNITFQLVHPTKRHLEDLEMEFDFSDKEVRDKLYKVATKLWRRVGRNSDLLTRERADKLKKMRKVGRAADIDDENPDLVEAFNKARRMETRERLNDHMVTYKDWQRILETVKIHVLTAGQNLVDTGDDFTRIYHVAQGKIEVNEIL 524
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Match: A0A835YLB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB7_9STRA) HSP 1 Score: 224 bits (571), Expect = 5.200e-62 Identity = 113/192 (58.85%), Postives = 150/192 (78.12%), Query Frame = 1
Query: 778 MLQGKDLWLQGMITLETVYVEYRADVHVFDHLVHERFHYQDVLAIRKTGPSCITFQLVHPTKRQLEDLEMEFDFSDGKVRDALYKVASKLWRRVGRNMDLLAKERSKKVTKMRKAGRAGDIADEEPDLVEAFQRARKLETRERLNDHMVTYKDWQKILEGVKLHVLKEGENLVTTGDDFTAIFHVAQGRIEV 1353
MLQG+DLWLQG ITLE+V++E++ADV VFDHLV ER HYQ+VL IRK + I F++V+P+++ L+D+E+ FD++D K+R A YK A KLWRRVGRNMDL+ K R +K+ KMR+ D+ D VEAF +AR+ ETRERL+ HMVTY+DWQK+L GVK+H+L+ GE L+ G+DF ++HVAQGRIEV
Sbjct: 1 MLQGRDLWLQGQITLESVFLEFKADVTVFDHLVWERVHYQEVLEIRKYSETGILFRVVNPSRKDLDDVELIFDYNDRKLRAAQYKAARKLWRRVGRNMDLMNKLRLEKMKKMRRPVDLSDV-----DQVEAFAKARRKETRERLDAHMVTYRDWQKLLGGVKIHILQSGEALLNAGEDFNKLYHVAQGRIEV 187
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Match: A0A7S2XW70_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW70_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.430e-48 Identity = 111/310 (35.81%), Postives = 175/310 (56.45%), Query Frame = 1
Query: 469 GNLTMLLAPLAPGSAVPVRQNPEMATVLLGIAATLWMTVMLFCFYFIRKVHYFKNLPLPIEREIWVEESRPNLARSSGKKLSEMITNLFSDKLDKPYEPTKCGML---------QGKDLWLQGMITLETVYVEYRADVHVFDHLVHERFHYQDVLAIRKTGPSCITFQLVHPTKRQLEDLEMEFDFSDGKVRDALYKVASKLWRRVGRNMDLLAKERSKKVTKMRKAGRAGDIADEEPDLVEAFQRARKLETRERLNDHMVTYKDWQKILEGVKLHVLKEGENLVT--TGDDFT----AIFHVAQGRIEV 1353
G L +++PLAPGS +PV+QNP A+ +L + LW M+ C + +RK +YFK++ L E I+ +E + + K ++I F+ K D P +P +CGML GK +W+QG+++ +T+Y +++AD+ +FDHL+ ERF Y DV+ IRK +C+ + + + E+ FD + KVR L+ A KLW R+GRN D+L + R+K G D V F +AR++ET+ER +H + YKDWQKIL GV + +L + + + G+ T A+ +VAQG + V
Sbjct: 3 GQLVQIISPLAPGSPLPVKQNPMYASAMLVLTMALWFMTMMACLWLVRKTYYFKHMTLNQEFLIYKKEQESPM--DTVKTWGDIIQGWFAKKEDPPLDPVRCGMLCGADKRFGGDGKGVWVQGVLSFDTIYFDFQADLTIFDHLIKERFSYYDVVEIRKFQQTCLLITVATGPEED-DKRELLFDVAYKKVRTDLFAGARKLWGRIGRNSDILVR-RAK-----------GSYEDH----VAMFYKARRMETKERFAEHFIAYKDWQKILNGVSMEILDQDQEVTVHRQGEASTFMTEAVCYVAQGSVRV 293
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Match: A0A6H5KDC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC8_9PHAE) HSP 1 Score: 161 bits (407), Expect = 3.180e-43 Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1
Query: 1 GAHVSYQPFDVEDYQEAADDDDQ-IPSQFPPITETADDRKNWPKSCPFLHLNWGEFAISDKRRFIKISYYFWHFLTFTLLWNMMSAIVTSLISPSPKEE 294
GAHVSYQPFDVEDYQEAA DDD IP+QFPP +ETADDRKNWPK+CPFLH+ + E AI DKRRFI ++Y+FWHFL +TLL+NM +A+VTSLISPSPKE+
Sbjct: 70 GAHVSYQPFDVEDYQEAASDDDSGIPTQFPPTSETADDRKNWPKACPFLHMKFEEMAIKDKRRFIWLAYHFWHFLVWTLLFNMCAAVVTSLISPSPKED 168
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Match: A0A7S3UPK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPK2_HETAK) HSP 1 Score: 76.3 bits (186), Expect = 4.300e-11 Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 982 EMEFDFSDGKVRDALYKVASKLWRRVGRNMDLLAKERSKKVTKMRKAGRAGDIADEEPDLVEAFQRARKLETRERLNDHMVTYKDWQKILEGVKLHVLKEGENLVTTGDDFTAIFHVAQGRIEVKRT 1362
EM FD +R + + +L RVGRN DL+ E + +++ G G D E F R R+ ET RL H+VTY+DWQK+L V + G+ ++ GD + +FHVAQG + V T
Sbjct: 16 EMVFDLGSRALRTSTFAATRQLVARVGRNTDLVVFEHER----LQRGGLVGPYQDP----TEKFARTRREETVGRLGAHLVTYRDWQKLLAAAACRVYQPGDRVLQPGDTVSCLFHVAQGGVRVLDT 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9116.16945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9116.16945.1 >prot_H-paniculata_contig9116.16945.1 ID=prot_H-paniculata_contig9116.16945.1|Name=mRNA_H-paniculata_contig9116.16945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=455bp GAHVSYQPFDVEDYQEAADDDDQIPSQFPPITETADDRKNWPKSCPFLHLback to top mRNA from alignment at H-paniculata_contig9116:2255..9140+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9116.16945.1 ID=mRNA_H-paniculata_contig9116.16945.1|Name=mRNA_H-paniculata_contig9116.16945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6886bp|location=Sequence derived from alignment at H-paniculata_contig9116:2255..9140+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9116:2255..9140+ >mRNA_H-paniculata_contig9116.16945.1 ID=mRNA_H-paniculata_contig9116.16945.1|Name=mRNA_H-paniculata_contig9116.16945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig9116:2255..9140+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |