mRNA_H-paniculata_contig9103.16939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9103.16939.1
Unique NamemRNA_H-paniculata_contig9103.16939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9103.16939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9103contigH-paniculata_contig9103:4422..5271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size851
Cds size708
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.9215503-UTR-H-paniculata_contig9103:4421..45631622931135.9215503-UTR-H-paniculata_contig9103:4421..4563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9103 4422..4563 +
1691481606.753224-UTR-H-paniculata_contig9103:4421..45631691481606.753224-UTR-H-paniculata_contig9103:4421..4563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9103 4422..4563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.9354904-CDS-H-paniculata_contig9103:4563..52711622931135.9354904-CDS-H-paniculata_contig9103:4563..5271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9103 4564..5271 +
1691481606.7661943-CDS-H-paniculata_contig9103:4563..52711691481606.7661943-CDS-H-paniculata_contig9103:4563..5271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9103 4564..5271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9103.16939.1prot_H-paniculata_contig9103.16939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9103 4564..5271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9103.16939.1

>prot_H-paniculata_contig9103.16939.1 ID=prot_H-paniculata_contig9103.16939.1|Name=mRNA_H-paniculata_contig9103.16939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MSELRSKYPQAQAWTFVLPDTPPISRTSSCSSKSTAVEAHKHRDNKATSG
RAAATTSNPHASSRASNEPMGACCSSNMDVTVAAAATTGPGRPRQSAGNK
ENTADKNQEVTVAPLFTSHTKSANSSQYAPPTTSTHLLSPDTAKAPIAAI
NLTAKNLDFSPSVSKARGSSIIDCSSVNSNGHQNNHTNGDPGICGTEGDG
AMGVLDATSLISPEPSLPSSMSRGEDVAFEDMGLGE
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mRNA from alignment at H-paniculata_contig9103:4422..5271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9103.16939.1 ID=mRNA_H-paniculata_contig9103.16939.1|Name=mRNA_H-paniculata_contig9103.16939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig9103:4422..5271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTCGAGTAGCACACAGGGTAAGTACTTGATTTGATTTATAGGAGGCC
GTTGAAAATCAAAAAGTTGCTGAAGTAAGCGAATTACGCCCCGTGTGCTT
CGCCGCTGCGCAAGCATAAACACCGTCAAGGGGGTGTCTCCGATGTCTGA
GCTGAGATCCAAGTACCCCCAGGCTCAAGCGTGGACATTTGTTCTCCCAG
ATACCCCCCCAATCAGCCGAACCAGTAGCTGCTCGAGTAAGTCGACTGCG
GTCGAGGCACACAAGCACAGAGACAATAAGGCGACAAGTGGCCGTGCAGC
AGCGACAACCAGCAATCCGCACGCGAGTAGTAGGGCTAGCAACGAACCAA
TGGGGGCATGCTGCTCTTCAAACATGGACGTAACCGTAGCAGCGGCGGCC
ACCACAGGCCCGGGCCGGCCAAGACAATCCGCCGGCAACAAGGAAAACAC
GGCAGACAAAAATCAAGAAGTGACCGTGGCGCCCTTGTTCACATCGCACA
CGAAATCTGCCAACAGTAGTCAATACGCGCCGCCGACGACGAGCACGCAT
TTGCTCAGCCCTGACACAGCTAAGGCGCCAATAGCGGCAATCAATCTCAC
AGCTAAGAATCTAGACTTCTCTCCCTCTGTAAGCAAGGCGCGTGGCAGCT
CCATCATAGACTGTTCGTCTGTAAACTCAAACGGCCACCAAAACAATCAC
ACCAACGGGGATCCTGGTATTTGCGGAACAGAGGGCGATGGCGCGATGGG
GGTTCTGGATGCAACGAGCTTGATATCGCCGGAGCCCAGCCTACCCAGCA
GCATGAGCCGGGGCGAGGATGTCGCATTTGAAGATATGGGCTTGGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9103:4422..5271+

>mRNA_H-paniculata_contig9103.16939.1 ID=mRNA_H-paniculata_contig9103.16939.1|Name=mRNA_H-paniculata_contig9103.16939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig9103:4422..5271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAGCTGAGATCCAAGTACCCCCAGGCTCAAGCGTGGACATTTGT
TCTCCCAGATACCCCCCCAATCAGCCGAACCAGTAGCTGCTCGAGTAAGT
CGACTGCGGTCGAGGCACACAAGCACAGAGACAATAAGGCGACAAGTGGC
CGTGCAGCAGCGACAACCAGCAATCCGCACGCGAGTAGTAGGGCTAGCAA
CGAACCAATGGGGGCATGCTGCTCTTCAAACATGGACGTAACCGTAGCAG
CGGCGGCCACCACAGGCCCGGGCCGGCCAAGACAATCCGCCGGCAACAAG
GAAAACACGGCAGACAAAAATCAAGAAGTGACCGTGGCGCCCTTGTTCAC
ATCGCACACGAAATCTGCCAACAGTAGTCAATACGCGCCGCCGACGACGA
GCACGCATTTGCTCAGCCCTGACACAGCTAAGGCGCCAATAGCGGCAATC
AATCTCACAGCTAAGAATCTAGACTTCTCTCCCTCTGTAAGCAAGGCGCG
TGGCAGCTCCATCATAGACTGTTCGTCTGTAAACTCAAACGGCCACCAAA
ACAATCACACCAACGGGGATCCTGGTATTTGCGGAACAGAGGGCGATGGC
GCGATGGGGGTTCTGGATGCAACGAGCTTGATATCGCCGGAGCCCAGCCT
ACCCAGCAGCATGAGCCGGGGCGAGGATGTCGCATTTGAAGATATGGGCT
TGGGGGAGATGTCTGAGCTGAGATCCAAGTACCCCCAGGCTCAAGCGTGG
ACATTTGTTCTCCCAGATACCCCCCCAATCAGCCGAACCAGTAGCTGCTC
GAGTAAGTCGACTGCGGTCGAGGCACACAAGCACAGAGACAATAAGGCGA
CAAGTGGCCGTGCAGCAGCGACAACCAGCAATCCGCACGCGAGTAGTAGG
GCTAGCAACGAACCAATGGGGGCATGCTGCTCTTCAAACATGGACGTAAC
CGTAGCAGCGGCGGCCACCACAGGCCCGGGCCGGCCAAGACAATCCGCCG
GCAACAAGGAAAACACGGCAGACAAAAATCAAGAAGTGACCGTGGCGCCC
TTGTTCACATCGCACACGAAATCTGCCAACAGTAGTCAATACGCGCCGCC
GACGACGAGCACGCATTTGCTCAGCCCTGACACAGCTAAGGCGCCAATAG
CGGCAATCAATCTCACAGCTAAGAATCTAGACTTCTCTCCCTCTGTAAGC
AAGGCGCGTGGCAGCTCCATCATAGACTGTTCGTCTGTAAACTCAAACGG
CCACCAAAACAATCACACCAACGGGGATCCTGGTATTTGCGGAACAGAGG
GCGATGGCGCGATGGGGGTTCTGGATGCAACGAGCTTGATATCGCCGGAG
CCCAGCCTACCCAGCAGCATGAGCCGGGGCGAGGATGTCGCATTTGAAGA
TATGGGCTTGGGGGAG
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