mRNA_H-paniculata_contig910.16937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig910.16937.1
Unique NamemRNA_H-paniculata_contig910.16937.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.230e-19
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:  804 PTIYAKRN------DYLLHILHIAVTSGMERKYFMGTLGMGSWHEWPHQHPVALFGPVWYNTSRSDSSNIGWSQMKGLVFAHVGAR--WQEMFVGPAETRWMV 1088
            P IYA R        Y+LHILHI++T+G    +FMG LG GSWHEW   H  +L G VWYNTSRS+SSN  + + + LV     A   W + F+ PAETRWMV
Sbjct:   55 PIIYAHRLRLRXRLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMVWYNTSRSNSSNTNFLRWQKLVADEFPAAKPWTKKFIRPAETRWMV 157
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BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.180e-15
Identity = 45/85 (52.94%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  870 MERKYFMGTLGMGSWHEWPHQHPVALFGPVWYNTSRSDSSNIGWSQMKGLVFAHV--GARWQEMFVGPAETRWMVVWDDASL-CE 1115
            M    FMG LG GSWHEW   H  +L G VWYNTSRS SSN  + + K +V A       W   F+ PAETRWMVV D A L CE
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCE 85
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BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.400e-15
Identity = 45/85 (52.94%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  870 MERKYFMGTLGMGSWHEWPHQHPVALFGPVWYNTSRSDSSNIGWSQMKGLVFAHV--GARWQEMFVGPAETRWMVVWDDASL-CE 1115
            M    FMG LG GSWHEW   H  +L G VWYNTSRS SSN  + + K +V A       W   F+ PAETRWMVV D A L CE
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCE 85
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BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-14
Identity = 44/82 (53.66%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:  870 MERKYFMGTLGMGSWHEWPHQHPVALFGPVWYNTSRSDSSNIGWSQMKGLVFAHV--GARWQEMFVGPAETRWMVVWDDASL 1109
            M   YFMG LG GSWHEW   H  +L G VWYNTSRS+SSN  + + K +V         W   FV PAETRWMVV D A L
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKL 82
[Close]
BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.090e-14
Identity = 45/85 (52.94%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:  870 MERKYFMGTLGMGSWHEWPHQHPVALFGPVWYNTSRSDSSNIGWSQMKGLVFAHV--GARWQEMFVGPAETRWMVVWDDASL-CE 1115
            M    FMG LG GSWHEW   H  +L G VWYNTSRS+SSN  + + K +V A       W   F+ PAETRWMVV D A L CE
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQRWKRIVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCE 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig910.16937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE2.230e-1950.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR2_9PHAE1.180e-1552.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW26_9PHAE8.400e-1552.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FIQ1_ECTSI1.710e-1453.66Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KH75_9PHAE2.090e-1452.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig910contigH-paniculata_contig910:24931..26762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1832
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig910.16937.1prot_H-paniculata_contig910.16937.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig910 25584..26066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.6461-UTR-H-paniculata_contig910:24930..255831622931135.6461-UTR-H-paniculata_contig910:24930..25583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig910 24931..25583 +
1691481606.6242476-UTR-H-paniculata_contig910:24930..255831691481606.6242476-UTR-H-paniculata_contig910:24930..25583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig910 24931..25583 +
1622931135.6770837-UTR-H-paniculata_contig910:26066..267621622931135.6770837-UTR-H-paniculata_contig910:26066..26762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig910 26067..26762 +
1691481606.643167-UTR-H-paniculata_contig910:26066..267621691481606.643167-UTR-H-paniculata_contig910:26066..26762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig910 26067..26762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.6592155-CDS-H-paniculata_contig910:25583..260661622931135.6592155-CDS-H-paniculata_contig910:25583..26066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig910 25584..26066 +
1691481606.633332-CDS-H-paniculata_contig910:25583..260661691481606.633332-CDS-H-paniculata_contig910:25583..26066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig910 25584..26066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig910.16937.1

>prot_H-paniculata_contig910.16937.1 ID=prot_H-paniculata_contig910.16937.1|Name=mRNA_H-paniculata_contig910.16937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MASHTSPSRPHPVAGQQWKMAEHKQEQPLPTAATTCQDTAVEAAEAATAP
PTIYAKRNDYLLHILHIAVTSGMERKYFMGTLGMGSWHEWPHQHPVALFG
PVWYNTSRSDSSNIGWSQMKGLVFAHVGARWQEMFVGPAETRWMVVWDDA
SLCEELTAHS*
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mRNA from alignment at H-paniculata_contig910:24931..26762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig910.16937.1 ID=mRNA_H-paniculata_contig910.16937.1|Name=mRNA_H-paniculata_contig910.16937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1832bp|location=Sequence derived from alignment at H-paniculata_contig910:24931..26762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGGTGTACAATAACTATAGGTTATACGTACCTTTGAGGTTATGA
AGACAGCCTGAAAAGCTGCTTGTGAACACTTATCACCATATTGTGACATC
AAATCAGGGGCAATTACGTAAATTTCGTGCTGTAAAAAGCTGAAAAAAGC
TGATGAAAACACAAAACAAAACCTATACGTATCACCGAGATTTTTCTTAA
TACCCTCACAGTTAGGGGTGCACCTAAGTCCTCAACAGTGCTGAACAGTG
CGGTAATTATGCCGCAAAGACCACGTAACTTTTCGCAACGACCACGTATT
TATTGCCGGCTTTTTAGAGGGTTTGGGCCAAATAAGAACAAGCATATAGT
TGTTCGCCACCTCCAAAAAAACACACACACACAACTATCGAGAGATCCAA
CATCACCTGATAATAATAAAAATAATCATAATAAACACCGAGAGACCCAA
CGTAAGCTAAATAAATGAAAAAATGAATAGTCCCGAAAGAGGCAGAATAT
CCCAAAAACACGGAAAGATGAACAACCCTGAAGAACCCATCAGAAAGACT
GAGGAGCTACAGACAGAACAGAGAGACTGTTCCACAGGCGAGGGCTGCCT
CTCACTGGCTCCCTCCGACTGCAACATCAATAGCATCTGCGCACACAGCA
CGCATGGCATCCCACACCAGCCCAAGTAGACCGCATCCAGTGGCCGGACA
GCAGTGGAAAATGGCCGAGCACAAGCAAGAGCAGCCGCTCCCGACCGCTG
CTACGACATGCCAGGATACAGCAGTAGAAGCAGCAGAAGCAGCGACCGCA
CCTCCCACAATCTATGCAAAACGCAATGATTATCTCCTACATATCCTCCA
CATCGCCGTGACGTCAGGGATGGAGAGGAAATATTTCATGGGCACCCTTG
GCATGGGGTCGTGGCATGAGTGGCCGCATCAACATCCTGTAGCGTTGTTT
GGTCCTGTCTGGTACAATACGAGCAGAAGTGACTCTTCAAATATCGGATG
GTCTCAGATGAAGGGGTTGGTTTTCGCACATGTCGGTGCGAGATGGCAGG
AAATGTTTGTGGGGCCTGCCGAAACGCGGTGGATGGTAGTTTGGGACGAC
GCGAGTCTTTGCGAGGAACTCACAGCTCACAGCTAGACGGTAAAAAGGCG
GACCACAGCTAAGGTTCGAGTGCCCTGGAACCCTGAGAATCCTGGTTACA
ACAACGAGCTACAACCATTGCAATATGCAATACGAATTATGTATGCCCCT
ACGACCACCCAACGTAACCCTCACGACCAGATGTGTGAAGAATATTTACG
TTCGAAAAGGATGCCCTCTCCCGCTCTCTAAATTCGAGTAGTTTTGGGTG
CGTTTTTGGTGTTGATGGATCAGTTTAAATTCGAGTAGTTTGGGGTACTT
AATTATGTTGATAGGCTATCTTGTGAATAAATATACTCCTCAGTAAGGTC
GTCGATTAGGGTGCGGTTTTTTCCATCGTTGGTCTTCTGTATTTTTGTAT
CTTTCAAGTCATAAGCATGAAACATCTTCAACGAGAAAGCAGCAAAAAAA
CACACTATTTATTGAGGCGTTTTTTTAATCCTCATAACGCGGATTAAATG
TCCAGCAAGATCACGCCCTAGATTAGGCACATACCCAAGTGTGTGTTGAG
TCTCACGAGCCAGTTCCTAACTTGTATCGAGTAATTCAGGTTACAAGCAC
GTGGATACCCGACACTGAATACAAATAAATTGCGGGATGTAGCTGGCACT
ATCTATCAGGGGATAAACATTTTTTTTTTCTTCATTCGGCACTTTATCAT
GTGATCGTTGTCACCAAAATTTGGCTGCAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig910:24931..26762+

>mRNA_H-paniculata_contig910.16937.1 ID=mRNA_H-paniculata_contig910.16937.1|Name=mRNA_H-paniculata_contig910.16937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig910:24931..26762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCCCACACCAGCCCAAGTAGACCGCATCCAGTGGCCGGACAGCA
GTGGAAAATGGCCGAGCACAAGCAAGAGCAGCCGCTCCCGACCGCTGCTA
CGACATGCCAGGATACAGCAGTAGAAGCAGCAGAAGCAGCGACCGCACCT
CCCACAATCTATGCAAAACGCAATGATTATCTCCTACATATCCTCCACAT
CGCCGTGACGTCAGGGATGGAGAGGAAATATTTCATGGGCACCCTTGGCA
TGGGGTCGTGGCATGAGTGGCCGCATCAACATCCTGTAGCGTTGTTTGGT
CCTGTCTGGTACAATACGAGCAGAAGTGACTCTTCAAATATCGGATGGTC
TCAGATGAAGGGGTTGGTTTTCGCACATGTCGGTGCGAGATGGCAGGAAA
TGTTTGTGGGGCCTGCCGAAACGCGGTGGATGGTAGTTTGGGACGACGCG
AGTCTTTGCGAGGAACTCACAGCTCACAGCTAGATGGCATCCCACACCAG
CCCAAGTAGACCGCATCCAGTGGCCGGACAGCAGTGGAAAATGGCCGAGC
ACAAGCAAGAGCAGCCGCTCCCGACCGCTGCTACGACATGCCAGGATACA
GCAGTAGAAGCAGCAGAAGCAGCGACCGCACCTCCCACAATCTATGCAAA
ACGCAATGATTATCTCCTACATATCCTCCACATCGCCGTGACGTCAGGGA
TGGAGAGGAAATATTTCATGGGCACCCTTGGCATGGGGTCGTGGCATGAG
TGGCCGCATCAACATCCTGTAGCGTTGTTTGGTCCTGTCTGGTACAATAC
GAGCAGAAGTGACTCTTCAAATATCGGATGGTCTCAGATGAAGGGGTTGG
TTTTCGCACATGTCGGTGCGAGATGGCAGGAAATGTTTGTGGGGCCTGCC
GAAACGCGGTGGATGGTAGTTTGGGACGACGCGAGTCTTTGCGAGGAACT
CACAGCTCACAGCTAG
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