mRNA_H-paniculata_contig91.16935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig91.16935.1 vs. uniprot
Match: A0A6H5JLV2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV2_9PHAE) HSP 1 Score: 385 bits (989), Expect = 4.380e-122 Identity = 266/544 (48.90%), Postives = 324/544 (59.56%), Query Frame = 1
Query: 19 EEKDLEEKREQKMEEEMLLERHGQPTGPRPPWMVAVENNLGAGDGAIVASMLNAEPGAGAGVGAGAHDRRPLRMSRVDQFNAAGGGTSTQRWRSLRLAQRACIPPTEVFAVLEALSNTLIFNSANPEERLALASRLRHWAVEDGTYLIREGDGDSHRSAIFMIASGKATISLNQKLENGSVQEVDVKDIKYPNYFGEGRVLADQCAYASVRAKEQLVVYYIIRADIEELVSRKTRALMVRDMEIRMFQKKHMDDLFGVIRDKRSGMKCLTRFAGEQLMDGDVLFFNDVEAYKKSVSDAAINSRA-FAQRIFDTYILPGTGG-PGLIYTSEAQHKAIAAQMTHLWGKGNENRKNNEDQVSEPTPGGEATTGDPVTTRGXXXXXXXXTRRNKTITNGTDDEDISGLAGDYIGACDIASDRQSEHNHESGEE--KSEPLRWISSEGSNASTYISPEVSTNCGYFGGERGGGRINDSGGGGERQRGEEEWRERALS--LFDEVLDQNAIPTIRQHIIPKFIQSPYYEMFLTELFPLLSDPTKDVNNRD 1632
EE+D EE+R Q +E+ E GQ GPRP WM A A G G G GAG+ LRM+RVD FN++ G S + + LA+RACIP TEV VLE LS TLIFN+A +ERLALASRLRHW V DGTYLIREGDGD +RSAIFMIASGKATISLN+ +E GSVQEVD+KDIK PNYFGEGRVL D AYASVRAKE+LVVYY++RADIEELVS TRALM RDM +R FQK+H+DDLF VIR SGMKCL RFA EQ M G+V FF +VEAY+ + + +R A+RI +YI P + G P +IYTSEAQ A+AA+M D ++ G A+ D + + G D+ G G + D S + G + S R SS S+++ + S G G G + D G E + G + +ALS LFDE+LDQNAIPTIRQ+I+PKFIQS YYE+FL ELFP + P D+N D
Sbjct: 3 EERDREERRLQTIED---WELSGQRGGPRPQWMPA------ASAGPXXXXXXXXXXGIKRG-GAGSR----LRMTRVDGFNSSVG-FSPRNSKDRPLAERACIPTTEVINVLENLSGTLIFNTATSQERLALASRLRHWVVADGTYLIREGDGDRNRSAIFMIASGKATISLNRTIEGGSVQEVDIKDIKSPNYFGEGRVLGDSRAYASVRAKEELVVYYLMRADIEELVSPTTRALMERDMLVRKFQKEHLDDLFAVIRKNCSGMKCLARFAEEQRMGGEVGFFIEVEAYQNAETSEDNEARKQHAERIVASYISPSSSGVPSMIYTSEAQRNALAAKMRS-------------DGPADGEKEGGASLDDDRGVARFGRRTPPGAGGDTLVGEGEGCGDVGGQVGRGAVSPDSCSGNAGDGGEGPGPQWSGSRDTRTESSSPSSSACWDSGRSDDGAG-----EGDGEMMD---GAEDEEGRQGTDRKALSRSLFDEILDQNAIPTIRQNIVPKFIQSSYYEIFLAELFPQVETP--DINASD 508
BLAST of mRNA_H-paniculata_contig91.16935.1 vs. uniprot
Match: D7FW12_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW12_ECTSI) HSP 1 Score: 385 bits (988), Expect = 6.340e-122 Identity = 251/512 (49.02%), Postives = 305/512 (59.57%), Query Frame = 1
Query: 232 LRMSRVDQFNAAGGGTSTQRWRSLRLAQRACIPPTEVFAVLEALSNTLIFNSANPEERLALASRLRHWAVEDGTYLIREGDGDSHRSAIFMIASGKATISLNQKLENGSVQEVDVKDIKYPNYFGEGRVLADQCAYASVRAKEQLVVYYIIRADIEELVSRKTRALMVRDMEIRMFQKKHMDDLFGVIRDKRSGMKCLTRFAGEQLMDGDVLFFNDVEAYKKSVSDAAINSRA-FAQRIFDTYILPGTGG-PGLIYTSEAQHKAIAAQMTHLWGKGNENRKNNE-DQVSEPTPGGEATTGDPVTTRGXXXXXXXXTRRNKTITNGTDDEDISGLAGDYI----------------GACDIASDRQSEHNHESGEEKSEPLRWISSEGSNASTYISPEVSTNCGYFGGERGGGRINDSGGGGERQRGEEEWRERALS--LFDEVLDQNAIPTIRQHIIPKFIQSPYYEMFLTELFPLLSDPTKDVN-NRDSRIS------VGNLIDENAGGHS 1683
LRM+RVD FN+ G + R + A+RACIP TEV VLE LS TLIFN+A +ERLALASRLRHW VEDGTYLIREGDGD +RSAIFMIASGKATISLN+ +E GSVQEVD+KDIK PNYFGEGRVL D AYASVRAKE+LVVYY++RADIEELVS TRALM RDM +R FQK+H+DDLF VIR SGM+CL RFA EQ M G+V FF +VEAY+ + + +R A+RI +YI P + G PGLIYTSEAQ A+AA+M LW K +N+ + SE G DP G K G +D G+A G D++ D S + + GE + GE G I+ G E + G + +ALS LFDE+LDQNAIPTIRQ+I+PKFIQS YYE+FL ELFP + P D + +SR++ +DE+ GG S
Sbjct: 29 LRMTRVDGFNSTVGFSPRNR-KDRPFAERACIPATEVIDVLENLSGTLIFNTATSQERLALASRLRHWVVEDGTYLIREGDGDRNRSAIFMIASGKATISLNRTIEGGSVQEVDIKDIKSPNYFGEGRVLGDSQAYASVRAKEELVVYYLMRADIEELVSPTTRALMERDMLVRKFQKEHLDDLFAVIRKNLSGMECLARFAEEQRMGGEVGFFIEVEAYQNAETSEDDEARKQHAERIVASYISPSSSGVPGLIYTSEAQRNALAAKMRRLWPKHKPRHENSSIPRNSEKEGSGGGGKVDPPVVHGGGLVGDGPADGEKG--GGASLDDDRGVAXXXXXXXXXXXXXXXXXXXEGCGDVSPDSCSGNAGDGGEXXXXXXXXXXDARTXXXXXXXXXXXXXXXXXDGEGDGEMID----GAEDEEGRQGTDRKALSRSLFDEILDQNAIPTIRQNIVPKFIQSSYYEIFLAELFPQVETPDIDASAGNESRLAHLKSDNTSMTLDESDGGPS 533
BLAST of mRNA_H-paniculata_contig91.16935.1 vs. uniprot
Match: A0A835ZII8_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZII8_9STRA) HSP 1 Score: 223 bits (568), Expect = 5.660e-60 Identity = 124/249 (49.80%), Postives = 163/249 (65.46%), Query Frame = 1
Query: 358 ALSNTLIFNSANPEERLALASRLRHWAVEDGTYLIREGDGDSHRSAIFMIASGKATISLNQKLENGSVQEVDVKDIKYPNYFGEGRVLADQCAYASVRAKEQLVVYYIIRADIEELVSRKTRALMVRDMEIRMFQKKHMDDLFGVIRDKRSGMKCLTRFAGEQLMDGDVLFFNDV------------------------EAYKKSVSDAAINSRAFAQRIFDTYILPGTGGPGLIYTSEAQHKAIAAQM 1032
AL TLIF +A PEE++ LA RLR AVED YLIREG+ AIFMIA+G+ATIS+ ++L +G VQEVDVKD++YP+YFGEGR L ++ A+ASVRAK+ LVVY ++RAD++ELVSR+TRALMVRD++IR FQ +H+DDLF V+R GM L RFA EQ MDGD+ F+N++ +A+KK SD + R +RIF TY+ P L+YT+ Q + M
Sbjct: 55 ALQGTLIFKNATPEEKVLLAHRLRRMAVEDDAYLIREGE--DCEPAIFMIAAGRATISVTRELPDGGVQEVDVKDVRYPDYFGEGRCLTNEKAFASVRAKDGLVVYLLLRADMDELVSRRTRALMVRDLKIRRFQMEHVDDLFDVLRADARGMAFLCRFAAEQHMDGDLRFYNEIVGHAERALLSPATHQLRSALSRNTDAFKKLSSD--MERRKHMRRIFSTYLHDEPARPALVYTTVQQRTRLLQTM 299
BLAST of mRNA_H-paniculata_contig91.16935.1 vs. uniprot
Match: A0A836CGE9_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE9_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.470e-16 Identity = 70/216 (32.41%), Postives = 99/216 (45.83%), Query Frame = 1
Query: 352 LEALSNTLIFNSANPEERLALASRLRHWAVEDGTYLIRE---------------GDGD-SHRSAIFMIASGKATISLNQKL-ENGSVQEVDVKDIKYPNYFGEGRVLADQCAYASVRAK---------------------------------------EQLVVYYIIRADIEELVSRKTRALMVRDMEIRMFQKKHMDDLFGVIRDKRS--GMKCL 825
L L +F A +ER LA R+R V G +IR G+G S AIFM+ SG AT+S+ ++ + G EVD+ ++K P YFGEG VL AYASVRA+ + L++Y + + DI+ + TRA M+RD +R F+K+HM+DL+ +IRD R GM L
Sbjct: 158 LAQLEKVPLFAEAKEDERKELAKRMRSLTVARGDNIIRARRHTLCHPATFTIFLGEGTRSANPAIFMMVSGAATVSIFVQVPDGGGTMEVDITELKPPEYFGEGTVLTGFPAYASVRARANDESSADAPVRARDNDYLKLTCLIVXXXXXXXXXXXXRDDLLLYVLPKTDIDMVTGADTRARMLRDHRVRQFRKQHMNDLWDIIRDGREEYGMDLL 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig91.16935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig91.16935.1 >prot_H-paniculata_contig91.16935.1 ID=prot_H-paniculata_contig91.16935.1|Name=mRNA_H-paniculata_contig91.16935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=599bp NKYTVREEKDLEEKREQKMEEEMLLERHGQPTGPRPPWMVAVENNLGAGDback to top mRNA from alignment at H-paniculata_contig91:36021..40434+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig91.16935.1 ID=mRNA_H-paniculata_contig91.16935.1|Name=mRNA_H-paniculata_contig91.16935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4414bp|location=Sequence derived from alignment at H-paniculata_contig91:36021..40434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig91:36021..40434+ >mRNA_H-paniculata_contig91.16935.1 ID=mRNA_H-paniculata_contig91.16935.1|Name=mRNA_H-paniculata_contig91.16935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3594bp|location=Sequence derived from alignment at H-paniculata_contig91:36021..40434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |