mRNA_H-paniculata_contig9098.16930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9098.16930.1
Unique NamemRNA_H-paniculata_contig9098.16930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.730e-77
Identity = 141/222 (63.51%), Postives = 160/222 (72.07%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTV---RGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACLSDD 657
            SIHPSGRMALSVSRDRT+RLWNLLEGRCAY+KRLQGEGELV+WS  G SYLVVVG+ V VYSA  T+E  GEC+H ARVNSACF G + G   VA+  ATCADDK IRFFR  GG LL ++DVSD+CPTGR+RDMC+V              D      G+L  VTS G V+VWGVP+LE VG      E     L VPLL+TH++KGEPRFTCVTACL  D
Sbjct:  169 SIHPSGRMALSVSRDRTLRLWNLLEGRCAYIKRLQGEGELVKWSPAGDSYLVVVGSTVSVYSAA-TSEAVGECRHDARVNSACFTGGKGGKGAVAV--ATCADDKTIRFFRTEGGTLLGKVDVSDVCPTGRIRDMCHVGADAXXXXXXXXXXDRACSGGGSLATVTSTGGVHVWGVPTLEGVGA-----EGSGAELTVPLLSTHSLKGEPRFTCVTACLCGD 382
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A836CGS2_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.220e-28
Identity = 99/238 (41.60%), Postives = 126/238 (52.94%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPST----------------SETSDA----GADA--DTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHT-VKGEPRFTCVTAC 645
            SIHPSGRMALSVS DRT+RLWNL+EGR AY+KRL G G++VRWS  G+ + VVVG  +++Y A   +EP        ++N+  ++ +          +A  ADD +IR + A G  +L++L     C  GRVRDM Y    T                 ET+ A    GA A     RG LV VTS G V VW    L+  G     G   ATV+       HT V GEPRFTC+ AC
Sbjct:  132 SIHPSGRMALSVSTDRTLRLWNLVEGRAAYIKRLPGGGDMVRWSPQGTHFAVVVGKQLILYEAA-ASEPACTRSCPLKINAMAWLNDT--------TVAAAADDHVIRVYSATGD-VLAELPAEAACG-GRVRDMAYTPTLTLALGLGDSGGAAAHDPEETAAAEVAVGASALGTEQRGRLVTVTSTGTVQVW---ELKLDG-----GSCSATVV------AHTRVLGEPRFTCLVAC 344
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A7R9U2R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.130e-24
Identity = 74/224 (33.04%), Postives = 121/224 (54.02%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECK--HRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSL--------ESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTA 642
            ++HPSGR+ALSV++DRT+RLW+L++GRCA+ +R++G  E V+W   GS Y +++G +V V++A   A+ +  CK  H  R N+  F+       G+  +L T  DD+++RFFR   G L+ QLD+S + P  R+RD+C                       +  +S+G V VW V  +        +  GE +++ +    + D  L+  +    + R TCV A
Sbjct:  144 AVHPSGRVALSVAKDRTIRLWDLIKGRCAFTRRVRGIAEQVQWDEEGSMYAILIGRDVQVHNA---ADNSVVCKLEHEKRTNAFKFL------PGIGTIL-TAGDDRLLRFFRVSDGSLVRQLDLSTVFPF-RIRDLCLHENQA-----------------ILASSSGSVQVWDVEKMLAGYSVAAQEGGEAEEKADRAPELSDC-LVDAYEASDDARLTCVVA 338
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: F0WFN4_9STRA (p21activated protein kinaseinteracting protein putat n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFN4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.620e-20
Identity = 74/217 (34.10%), Postives = 110/217 (50.69%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACLS 651
            +IHPSG++A SV+RD+T+R+WNL+ GRCAY++RL+ E E+VR S  G  YL+  G NVV       AE  G   H  R+++  F  ++         L  CA +    +   V G LL+++  +D+  T R+R  C      +E+S+           +V  TS G V +W +  L+   E   E    A        AT  +   PR TC+TAC+S
Sbjct:  136 AIHPSGKLAFSVARDQTLRMWNLVNGRCAYIRRLEKEAEIVRISTLGKRYLLTFG-NVVSIFCTSDAELIGTLTHPKRMHACVFATDD---------LVVCAGEDRHIYVWNVDGTLLAKVTHADL--TARIR--CIDVIIENESSELPT--------IVLATSNGTVQIWDLNDLQLDSEFPLESNEAAQPA-----ATTMILNAPRITCLTACVS 325
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A024GIW4_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GIW4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.280e-20
Identity = 73/217 (33.64%), Postives = 111/217 (51.15%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACLS 651
            +IHPSG++A SV+RD+T+R+WNL+ GRCAY++RL+ E E+V+ S  G  YL+  G+ V ++S    AE  G  KH  RV++  F  ++         L  CA +    +   V G LL+++   D+  T R+R  C        +SD           +V  TS G V +W +  L+   +     E+  +V      AT  +   PR TC+TAC S
Sbjct:  136 TIHPSGKLAFSVARDQTLRMWNLVNGRCAYIRRLEKEAEIVKISTLGKRYLLTFGSVVSIFSTSD-AELVGTLKHPKRVHACVFATDD---------LVVCAGEDKHLYVWNVDGTLLAKVTHPDL--TARIR--CIDVIDQEVSSDLPI--------IVLATSNGTVQIWDLNDLQL--DSDSPFELNESVQPS---ATTKILNAPRITCLTACAS 325
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: K3X853_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X853_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 1.600e-19
Identity = 68/222 (30.63%), Postives = 116/222 (52.25%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACLSDDTLA 666
            ++HPSG++  SV+RDRT+R+WNL++GR AY++RL+ E  LV  S  G+ Y +  GT++ V+S+   AE  G  +H+ R+  A F  ++         +    DDK I  ++   G L++++   +I    R   + YV            + +     +V  TS G V +W + +L+      +E         VP+ +T  +  +PR TC+TACL+D+ +A
Sbjct:  133 AVHPSGKLCFSVARDRTLRMWNLVKGRIAYIRRLEREANLVMLSQKGTRYALCFGTDLSVFSSAN-AELVGTLEHKQRIQCAVFATDD--------YVVCGGDDKYIYVWKT-SGSLVAKVTHPEITARIRCMQVLYV------------NGEDQLPWIVIATSNGAVQIWDLATLKFDALAPEESNKSV----VPVASTLLLS-KPRLTCLTACLADEDIA 327
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A8K1FGB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGB7_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 2.720e-19
Identity = 74/226 (32.74%), Postives = 119/226 (52.65%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGA-----LVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACL--SDD 657
            ++HPSG++A SV+RDRT+R+WNL++GR AY++RL+ E   V  S  GS Y +  G++V V+S+   AE  G  +H  +V++A F  +E         +    +DK I  ++A G  L++++  +DI    R  ++ Y                  RGA     +V  +S+G V VW +       E  +E     T    PL++T T+  +PR TC++AC+  SDD
Sbjct:  130 AVHPSGKLAFSVARDRTLRMWNLVKGRIAYIRRLEKEASSVVMSQSGSRYALSFGSDVSVFSSAN-AEVVGMLEHSDKVHAAVFATDE--------YVVCGGEDKCIYVWKATGS-LVAKVTHADIISRIRCMEVVYA-----------------RGAEELPWIVVASSSGAVQVWDLADFTFDDESPEEANKDVT----PLVST-TLLSKPRVTCLSACVASSDD 323
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A5D6YCQ0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCQ0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.750e-18
Identity = 70/223 (31.39%), Postives = 114/223 (51.12%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCA-DDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEPRFTCVTACLSDDTLA 666
            ++HPSG++  SV+RDRT+R+WNL++GR AY++RL+ E  LV  S  GS Y +  G ++ V+S+   AE  G  +H+ RV  A F  ++            CA DDK I  ++A G  L++++  +DI    R   + YV            + +     +V  TS G V +W + +             G      P+ +T T+  +PR TC++AC++ D +A
Sbjct:  137 AVHPSGKLCFSVARDRTLRMWNLVKGRIAYIRRLEKEANLVLLSQKGSRYALCFGADLSVFSSAN-AELVGALEHKQRVQCAAFATDD---------YVVCAGDDKHIYVWQATGN-LVAKVTHADITARIRCLQVLYV------------NGEDALPWVVLATSNGTVQIWDLAAFTFDALAPAAANAGVA----PVTST-TLLSKPRLTCLSACVATDGVA 331
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A7S1U3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3M3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.190e-17
Identity = 68/213 (31.92%), Postives = 107/213 (50.23%), Query Frame = 1 
Query:   25 ALSVSRDRTMRLWNLLEGRCAYVKRLQG-EGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRGALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGAT----VLDVP--LLATHTVKGEPRFTCVTA 642
            ALSV++DRT+RLW+L++GRCA+ +RLQG     V+WS  G +Y ++    V V++A   A      +H  RVN+  F+ +         ++ T  D+KI+RFF+   G+L+ +LD+S I P        Y   + S   D G          V  +S G V VW +  +   G G  +   GA+    + +V   L+  +    + R TCV+A
Sbjct:    1 ALSVAKDRTIRLWDLIKGRCAFTRRLQGGAANQVKWSPAGDAYALLFDRAVQVHTAADNAIAC-TLEHAKRVNAFAFMTQSP-------LIVTAGDEKILRFFQTSDGQLVRELDLSSIFP--------YRIRALSIAGDLG----------VVCSSTGSVQVWDLERIAQGGGGDGKAADGASSTAQIEEVAECLVDAYETADDARVTCVSA 187
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BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Match: A0A7R9Y9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.100e-17
Identity = 48/113 (42.48%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:    1 SIHPSGRMALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTNVVVYSAKQTAEPTGECK--HRARVNSACFVGEEEGSEGVALVLATCADDKIIRFFR 333
            ++HPSGR+ALSV++DRT+RLW+L++GRCA+ +R++G  E V+W   GS Y +++G +V V++A   A+ +  CK  H  R N+  F+       G+  +L T  DD+++RFFR
Sbjct:  144 AVHPSGRVALSVAKDRTIRLWDLIKGRCAFTRRVRGIAEQVQWDEEGSMYAILIGRDVQVHNA---ADNSVVCKLEHEKRTNAFKFL------PGIGTIL-TAGDDRLLRFFR 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9098.16930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G200_ECTSI1.730e-7763.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGS2_9STRA1.220e-2841.60WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7R9U2R5_9STRA1.130e-2433.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0WFN4_9STRA2.620e-2034.10p21activated protein kinaseinteracting protein put... [more]
A0A024GIW4_9STRA3.280e-2033.64Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
K3X853_GLOUD1.600e-1930.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FGB7_PYTOL2.720e-1932.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YCQ0_9STRA3.750e-1831.39Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1U3M3_9STRA2.190e-1731.92Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9Y9Y4_9STRA4.100e-1742.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9098contigH-paniculata_contig9098:1005..4880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue3.8e-65
Seed eggNOG ortholog2880.D7G200
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-07_003530.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Exons4
Model size1900
Cds size1008
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9098.16930.1prot_H-paniculata_contig9098.16930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9098 1026..4009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.389898-UTR-H-paniculata_contig9098:1004..10251622931134.389898-UTR-H-paniculata_contig9098:1004..1025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9098 1005..1025 +
1691481605.9526272-UTR-H-paniculata_contig9098:1004..10251691481605.9526272-UTR-H-paniculata_contig9098:1004..1025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9098 1005..1025 +
1622931134.470982-UTR-H-paniculata_contig9098:4009..48801622931134.470982-UTR-H-paniculata_contig9098:4009..4880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9098 4010..4880 +
1691481606.0167813-UTR-H-paniculata_contig9098:4009..48801691481606.0167813-UTR-H-paniculata_contig9098:4009..4880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9098 4010..4880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.4048955-CDS-H-paniculata_contig9098:1025..11501622931134.4048955-CDS-H-paniculata_contig9098:1025..1150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 1026..1150 +
1691481605.9671142-CDS-H-paniculata_contig9098:1025..11501691481605.9671142-CDS-H-paniculata_contig9098:1025..1150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 1026..1150 +
1622931134.422281-CDS-H-paniculata_contig9098:1622..18301622931134.422281-CDS-H-paniculata_contig9098:1622..1830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 1623..1830 +
1691481605.9758692-CDS-H-paniculata_contig9098:1622..18301691481605.9758692-CDS-H-paniculata_contig9098:1622..1830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 1623..1830 +
1622931134.4362833-CDS-H-paniculata_contig9098:2968..32261622931134.4362833-CDS-H-paniculata_contig9098:2968..3226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 2969..3226 +
1691481605.9859693-CDS-H-paniculata_contig9098:2968..32261691481605.9859693-CDS-H-paniculata_contig9098:2968..3226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 2969..3226 +
1622931134.453072-CDS-H-paniculata_contig9098:3592..40091622931134.453072-CDS-H-paniculata_contig9098:3592..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 3593..4009 +
1691481606.0050259-CDS-H-paniculata_contig9098:3592..40091691481606.0050259-CDS-H-paniculata_contig9098:3592..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9098 3593..4009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9098.16930.1

>prot_H-paniculata_contig9098.16930.1 ID=prot_H-paniculata_contig9098.16930.1|Name=mRNA_H-paniculata_contig9098.16930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
MALSVSRDRTMRLWNLLEGRCAYVKRLQGEGELVRWSVGGSSYLVVVGTN
VVVYSAKQTAEPTGECKHRARVNSACFVGEEEGSEGVALVLATCADDKII
RFFRAVGGKLLSQLDVSDICPTGRVRDMCYVAPSTSETSDAGADADTVRG
ALVAVTSAGRVNVWGVPSLESVGEGQQEGEMGATVLDVPLLATHTVKGEP
RFTCVTACLSDDTLAEDRRQDQQQRSKKNLKKRKQRPLPAEATANPDAPL
EKVDNGEAKTSKKHKKKKKGKGKASDLPNGTPPLNGEASSARKDQQANQA
NGSVSSPRPVGGGGGGVKGKAGRGKGGSGNKKRRK*
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mRNA from alignment at H-paniculata_contig9098:1005..4880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9098.16930.1 ID=mRNA_H-paniculata_contig9098.16930.1|Name=mRNA_H-paniculata_contig9098.16930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3876bp|location=Sequence derived from alignment at H-paniculata_contig9098:1005..4880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATTCACCCGTCGGGGCGAATGGCGCTCTCCGTGTCGAGAGACCGGAC
GATGAGGTTGTGGAACCTTCTCGAGGGGAGGTGCGCGTACGTCAAGAGGC
TCCAGGGAGAGGGGGAGCTGGTGCGCTGGTCGGTGGGAGGAAGCAGGTGA
GCAGATAGAGTTGGGTCTCATCATCATTATGCATGTTTAGTTTTTGGTCA
GCAAGTGCTTTATTGTTACTGGTGTTTGTGGATTTAGCTAGCTAGCCCCT
CAGCAACCAGCCATCGTATCCTCTACTCTAACTCACCACGGATCATGAAG
AAAGACCAAATATATTGTTAACATGCATACTGCTGTAAATCATGACACGT
CGTCAGTTATTTTACAGAGATCTCTCGAGGACTCTCTCATAGGTTGCATT
TTTTCGAGATTTCGTCCTGTGTGATCTGCGTAATCGCTTGGCGAGCGTGG
TGAAAAATACTCCCATGATCGTTCCGCGGGTTTTGAATCTTTCGTATGGA
GCCGATGACGAGCCTGCCTGCCTATACCGCTGCCAGGTGTTTCCGAGCGA
CGATGTCGCTTACCGAGTGTTGTTGTTTTGCCCCCAAAATGCACTCTCGC
ACACGTAACCCACCCCAGCTATTTAGTCGTGGTGGGCACCAATGTCGTGG
TTTACAGCGCAAAGCAGACGGCAGAACCAACAGGAGAGTGCAAGCACCGG
GCCCGTGTGAACTCTGCGTGCTTCGTGGGCGAGGAGGAGGGGAGCGAAGG
CGTGGCGCTGGTGCTAGCAACGTGTGCGGACGACAAGATAATACGCTTCT
TCAGAGCAGTCGGCGGGAAGCTGCTGGTGAGGCGTTCTTGCGATGGACAA
TGCGGGGGGTAAAAATTTCCAAGATATCATAGCTCACAGACGGTTTTTGG
TCACACTCGGGATAAGAGCCTGTTACATGCATGACTCCCTACGCACGAGA
CGGAGAAGTCGTTAACTTTGGCTTGTGAGATTAAGATTCTGCGGCGCGGC
GGCGGCAGCATCGCTCGCTCCCCGTGCTTCCTTGTCACATGATTCCCCCT
CCGCGTTGAGTGAGTGCAGGGTGGCATACCAACCGTGGAGTTGGTAGTCC
TTCAGTCGTTGCCTCGGGGACTTCCCTCTTGCACTAGCGATGGGGAACTT
ATATCCTCTGATCACGTGTCTGCATGATCGAGCTAAAGTGTTGAATGTTA
CTACTAATTGCAATCGCCTGACGTTTGTTTTCCAATGTGCGTTATTTGTT
CACCCAAGCTCCACACTAAAACACGGGAAGTGAAAAAAAACTATCCAGGA
GATCAATCCATCACTGGAAAACGACCAAATACACAATGTAGCAACAAATC
CGTCACTTGTATGACCAGTGGCTTCTCTGACCTTTGCCACTCACTGTACC
TCCACTACAACGACACAAATCCCATTCGAGATCCACCGTAAACAGTTCTG
CTGTACTCAACATACATACTTTGTATTTAGAAATGTCGACTTTCCCGGTC
TATACATAAACGAACGGTACATTACAATAGCCGTTACCTCAACCGCCGTT
ATGACATACACAGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTA
CAGTTCACAGCAGCACTCCCTCCCTTCCCCCCTTGATCGAGGGCAGGCAA
CCTATGGTCCAATGGTCTGACGATTGAAGTACGCGTAACATGAGCACGCC
CCACCCCCCACATGCCGCACTTAATACTCATGGGCCTCCTTAACGTGCGG
CTGCAACAGTAATGATGTAGTTTAGACGGTCTTTGCCTGAAGATTCAATA
TTAAGCTACATTTACGAAAAACAGATGTATTCTAAACTTGTTGCTCGGGT
GACACGGAGGAGGACAAATGATCGATCAGCGGATCCATCCACATCTGTAA
CAATCTTCACACCCTTGTCCTCCTCCCCCGGCCGCTCCCCTGACACCATT
CGCGGGGTAAACAGAGCCAGCTGGACGTTAGTGATATCTGCCCGACGGGC
CGGGTGCGTGATATGTGCTATGTTGCTCCCAGTACAAGTGAGACTAGTGA
TGCTGGTGCTGATGCTGATACAGTAAGGGGGGCTTTAGTGGCCGTAACGT
CGGCGGGAAGGGTGAACGTGTGGGGCGTTCCGTCATTGGAAAGCGTCGGC
GAGGGGCAGCAGGAGGGGGAAATGGGGGCGACGGTGCTTGATGTCCCTTT
GCTGGCTACGCATACAGTCAAGGTGCGGTGCGTGCGTGGTCTCTGGTTTG
GTTGGGGAGTTATAGGTTTTCGGGGTTTTCGGGTGTACGTGAAAGGGGGC
ACCGCCGCTCTGGGTTGAGAGGGGGTGCAAATAGTTGTTAATATTTAGAC
TTTTTCTTTTTTTACGTCTCAAGTGTATTAATAGTTCTCCCAAAGTACCA
CGAGAAAGTCATGATCCATTTGGGAGCTACCCATATCCATTGTTGAGTCA
CTTAGTAAAAAATCATCAACGTTGTTTGTGTGTAAGAAAGATGAAAAGAT
CCAACAGCCGAGCGAAAAACCAACGTCTGTTACAAAAATTAGTCGAACCG
TTTGACAAGAACCCTCAGTAACCGTCGTTGTGCCGCAGGGAGAGCCCCGC
TTCACCTGCGTGACGGCTTGCCTTAGCGACGATACCCTGGCGGAGGACCG
GCGACAGGATCAACAGCAACGGAGCAAGAAAAACTTGAAGAAACGCAAGC
AGCGCCCGCTCCCCGCCGAAGCCACCGCCAACCCCGACGCCCCACTCGAG
AAGGTGGACAACGGCGAGGCCAAAACATCCAAGAAGCACAAAAAAAAAAA
AAAGGGAAAAGGGAAGGCTTCGGACCTCCCGAACGGGACTCCACCCCTTA
ATGGAGAGGCGTCGTCAGCGCGTAAGGATCAGCAAGCGAATCAAGCGAAC
GGGAGCGTTAGCAGTCCAAGGCCGGTTGGCGGTGGTGGCGGAGGTGTGAA
AGGAAAGGCAGGAAGGGGTAAGGGTGGCAGCGGGAACAAGAAGCGGCGAA
AATGAACCAATCAGATTTCTCCTCTCTCAACAATGTTGACCAATAGGAAA
ACTGCGGGCACCTATTCCCTTTCTCTCTACTTGGCTTTTGCTATGTGTGA
ATGTTGGCGAGATGTATCTGGGAGCAAGCAGGCCGGTGGTTCTGTACCCC
CATGCTGTATAGTCACGTCTGCCAGCTGAGGGATAAGTACAAAACCGTCC
GAGGTTAGCGGCGCTGACGACCCCAGCGGCGGTTCCGAAAACTTCATGCT
TGCGTGTTGTAGTGGATGATGAACTATTGCCAAGAGTACAATAAGTGGAA
TCTTGGGTACTCCGGCGGGGGTGGTACGCTCTCGGGTAGGTGCGAAGTGT
TCTCCCTGTTCAGTTGCGTGCAATACGGTGTGGCTTCACTGACTGGTGTG
ATACTTGATTCCGCGGACCGAAGTCCAAATGGCTAGGGTAGCCCGTGTAC
AGGGCAATCTAGGAGACATGTTTACGGGCTTTGTGTGTGCGAGCCTCACA
TAACCTGCTCGCCTGGTCGTGGGCGTGGTGCTATTATCTACCGTGTGCGA
CCCATCCGAGAGCAGGGAAACCGAAGGCCCGATGAACTGCACACTGCCCA
GTATCGAACTACACATGCAAAAAGCCGCCTGTCGAGATCCGGCGGGGGAA
AGAGCATTAGCTCAGGTTTCTCTTTGATCTCCTGGGGATTTGAAAGAGAA
CGGGAGTACTGCATTTTCGCCTTCAATAAGGCAACGTGAAACACGATAAT
GTGGATTGATGGATCGTGGACCCCGTTGCTGCGAAATCGTTGGATTTGGC
TCTCCTCTTACTGTGATTGTATCGACCTATATGTTGCGCGTGAAACGAAG
AATTTTATCCACGTGACAATGTGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig9098:1005..4880+

>mRNA_H-paniculata_contig9098.16930.1 ID=mRNA_H-paniculata_contig9098.16930.1|Name=mRNA_H-paniculata_contig9098.16930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig9098:1005..4880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTCTCCGTGTCGAGAGACCGGACGATGAGGTTGTGGAACCTTCT
CGAGGGGAGGTGCGCGTACGTCAAGAGGCTCCAGGGAGAGGGGGAGCTGG
TGCGCTGGTCGGTGGGAGGAAGCAGATGGCGCTCTCCGTGTCGAGAGACC
GGACGATGAGGTTGTGGAACCTTCTCGAGGGGAGGTGCGCGTACGTCAAG
AGGCTCCAGGGAGAGGGGGAGCTGGTGCGCTGGTCGGTGGGAGGAAGCAG
CTATTTAGTCGTGGTGGGCACCAATGTCGTGGTTTACAGCGCAAAGCAGA
CGGCAGAACCAACAGGAGAGTGCAAGCACCGGGCCCGTGTGAACTCTGCG
TGCTTCGTGGGCGAGGAGGAGGGGAGCGAAGGCGTGGCGCTGGTGCTAGC
AACGTGTGCGGACGACAAGATAATACGCTTCTTCAGAGCAGTCGGCGGGA
AGCTGCTGCTATTTAGTCGTGGTGGGCACCAATGTCGTGGTTTACAGCGC
AAAGCAGACGGCAGAACCAACAGGAGAGTGCAAGCACCGGGCCCGTGTGA
ACTCTGCGTGCTTCGTGGGCGAGGAGGAGGGGAGCGAAGGCGTGGCGCTG
GTGCTAGCAACGTGTGCGGACGACAAGATAATACGCTTCTTCAGAGCAGT
CGGCGGGAAGCTGCTGAGCCAGCTGGACGTTAGTGATATCTGCCCGACGG
GCCGGGTGCGTGATATGTGCTATGTTGCTCCCAGTACAAGTGAGACTAGT
GATGCTGGTGCTGATGCTGATACAGTAAGGGGGGCTTTAGTGGCCGTAAC
GTCGGCGGGAAGGGTGAACGTGTGGGGCGTTCCGTCATTGGAAAGCGTCG
GCGAGGGGCAGCAGGAGGGGGAAATGGGGGCGACGGTGCTTGATGTCCCT
TTGCTGGCTACGCATACAGTCAAGAGCCAGCTGGACGTTAGTGATATCTG
CCCGACGGGCCGGGTGCGTGATATGTGCTATGTTGCTCCCAGTACAAGTG
AGACTAGTGATGCTGGTGCTGATGCTGATACAGTAAGGGGGGCTTTAGTG
GCCGTAACGTCGGCGGGAAGGGTGAACGTGTGGGGCGTTCCGTCATTGGA
AAGCGTCGGCGAGGGGCAGCAGGAGGGGGAAATGGGGGCGACGGTGCTTG
ATGTCCCTTTGCTGGCTACGCATACAGTCAAGGGAGAGCCCCGCTTCACC
TGCGTGACGGCTTGCCTTAGCGACGATACCCTGGCGGAGGACCGGCGACA
GGATCAACAGCAACGGAGCAAGAAAAACTTGAAGAAACGCAAGCAGCGCC
CGCTCCCCGCCGAAGCCACCGCCAACCCCGACGCCCCACTCGAGAAGGTG
GACAACGGCGAGGCCAAAACATCCAAGAAGCACAAAAAAAAAAAAAAGGG
AAAAGGGAAGGCTTCGGACCTCCCGAACGGGACTCCACCCCTTAATGGAG
AGGCGTCGTCAGCGCGTAAGGATCAGCAAGCGAATCAAGCGAACGGGAGC
GTTAGCAGTCCAAGGCCGGTTGGCGGTGGTGGCGGAGGTGTGAAAGGAAA
GGCAGGAAGGGGTAAGGGTGGCAGCGGGAACAAGAAGCGGCGAAAATGAG
GAGAGCCCCGCTTCACCTGCGTGACGGCTTGCCTTAGCGACGATACCCTG
GCGGAGGACCGGCGACAGGATCAACAGCAACGGAGCAAGAAAAACTTGAA
GAAACGCAAGCAGCGCCCGCTCCCCGCCGAAGCCACCGCCAACCCCGACG
CCCCACTCGAGAAGGTGGACAACGGCGAGGCCAAAACATCCAAGAAGCAC
AAAAAAAAAAAAAAGGGAAAAGGGAAGGCTTCGGACCTCCCGAACGGGAC
TCCACCCCTTAATGGAGAGGCGTCGTCAGCGCGTAAGGATCAGCAAGCGA
ATCAAGCGAACGGGAGCGTTAGCAGTCCAAGGCCGGTTGGCGGTGGTGGC
GGAGGTGTGAAAGGAAAGGCAGGAAGGGGTAAGGGTGGCAGCGGGAACAA
GAAGCGGCGAAAATGA
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