mRNA_H-paniculata_contig9091.16925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9091.16925.1
Unique NamemRNA_H-paniculata_contig9091.16925.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: D7G226_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G226_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 1.120e-104
Identity = 155/234 (66.24%), Postives = 185/234 (79.06%), Query Frame = 3
Query:    3 GRRNAGPPAPPEPTKYGLLEGPIPTKLLLISVGVAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQTASDGSGKDRESI 704
            G R  G P P  P   G    P+ +K L++   +A GG++ LFQL LLPKSWG WVSK+ FWPTLPFTM+R   NYWT+MD+TV+LGAAPVGFLGH D L+  GV GVIN+CGEY+GPL DY   GIEQLWLPTVDH EP LADY RGV FI++++ +G KVLVHCKAGHGRS AIVM WLLAS  + TPLEVQR+M+SKRRVRT+LYKQ NLR FY+SLQT++DG+GKDRE++
Sbjct:   12 GDRFYGKPEPISP-HGGPPGSPLTSKALILGAALAAGGIFGLFQLRLLPKSWGPWVSKIYFWPTLPFTMIRAFDNYWTKMDDTVYLGAAPVGFLGHADALHAKGVVGVINMCGEYRGPLEDYARLGIEQLWLPTVDHEEPELADYDRGVAFIQKWNSKGGKVLVHCKAGHGRSSAIVMAWLLASKRNTTPLEVQRQMSSKRRVRTFLYKQLNLRLFYRSLQTSADGTGKDRENV 244          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A6H5K222_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K222_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 3.580e-81
Identity = 125/198 (63.13%), Postives = 146/198 (73.74%), Query Frame = 3
Query:    3 GRRNAGPPAPPEPTKYGLLEGPIPTKLLLISVGVAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMN 596
            G R  G P P  P   G    P+ +K L++   +A GG++ LFQL LLPKSWG WVSK+ FWPTLPFTM+R   NYWT+MD+TV+LGAAPVGFLGH D L+  GV GVIN+CGEY+GPL DY   GIEQLWLPTVDH EP LADY RGV FI++++ +G KVLVHCKAGHGRS AIVM WLLAS  + TPLE     N
Sbjct:   12 GDRFNGKPEPISP-HGGPPGSPLTSKALMLGAALAAGGIFGLFQLRLLPKSWGPWVSKIYFWPTLPFTMIRAFDNYWTKMDDTVYLGAAPVGFLGHADALHAKGVVGVINMCGEYRGPLEDYARLGIEQLWLPTVDHEEPELADYYRGVAFIQKWNSKGGKVLVHCKAGHGRSSAIVMAWLLASKRNTTPLEASAATN 208          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A835YX57_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX57_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.860e-66
Identity = 106/188 (56.38%), Postives = 134/188 (71.28%), Query Frame = 3
Query:  120 YALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQTASDGS 683
            YALFQ HLLP++ G+ V+KL FWPT+PFT++ R  NY+T MD+TV LG AP+  LGH D L+  GV  V+N+C EY GP   YK  G+ QL LP VDH EP  AD VRGV FI+   +RGE+VLVHCKAGHGRSGA+ MGWLL+++  ATP + Q  MNS+R VR  LY+Q N++ +Y  LQ   D +
Sbjct:   44 YALFQKHLLPEAVGKRVAKLYFWPTMPFTLISRWSNYFTVMDDTVILGGAPLAALGHPDMLHALGVHSVLNMCDEYSGPEGAYKRLGMRQLRLPVVDHTEPTTADIVRGVAFIRECARRGERVLVHCKAGHGRSGAVAMGWLLSADARATPAKAQALMNSRRDVRKRLYRQQNVQEYYALLQRERDAA 231          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A1V9ZPE9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPE9_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.420e-58
Identity = 99/184 (53.80%), Postives = 126/184 (68.48%), Query Frame = 3
Query:  111 GGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSL 662
            G LY  FQLHLLP S+ R V ++ F+PTLP T L R LNY+T +D  VFLGA P+ FL HV  L+  GVR V+NLC EYQGP++ Y+  GI+QLWLPTVDH EP L D  + ++FI+   +RG +V VHCKAG GRS AI   WLL  + + +  E Q  +N KRRVR  L++Q N+ +FY SL
Sbjct:   14 GVLYVAFQLHLLPPSFARIVGRITFFPTLPLTYLARRLNYYTLIDSHVFLGAVPLVFLDHVKELHARGVRAVVNLCDEYQGPISAYRAMGIKQLWLPTVDHTEPTLQDIEKAMEFIQFHKERGSRVYVHCKAGAGRSAAIAYCWLLQQHLNWSLKETQEYLNEKRRVRKSLFRQTNIVAFYDSL 197          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A1V9ZS93_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS93_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.380e-57
Identity = 95/195 (48.72%), Postives = 130/195 (66.67%), Query Frame = 3
Query:   90 ISVGVAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQTAS 674
            + + VA G  YA FQLHLLPK   R   ++ F+PT P T L R  NY+T +D  VFLGA P+  LG+VD ++  GVR V+NLC EY+GP+A Y+  GI+QLW+PTVDH EP+L D  + V+FI+   +RG +V VHCKAG GRS A+   WLL   P+ T  + Q  +N KR+VR  LY+Q N+ ++Y+ L + +
Sbjct:   15 VGLSVALGLFYAAFQLHLLPKPLARIAGRVYFFPTWPLTYLVRRTNYFTLVDSHVFLGAVPIAALGYVDKMHARGVRAVVNLCDEYEGPVAAYRAAGIKQLWIPTVDHTEPSLEDVKKAVEFIQFHKERGSRVYVHCKAGAGRSAAVAFCWLLHEKPAWTLQDTQAYLNEKRKVRKSLYQQPNIVAYYEMLHSVT 209          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A7S3L8S0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8S0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.280e-57
Identity = 98/203 (48.28%), Postives = 133/203 (65.52%), Query Frame = 3
Query:   90 ISVGVAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQTASDGSGKDRE 698
            +S+G+  G LY L Q HLLPK   R VSK +FWPTLP T+ +R  ++ T +D+TV +G AP GF+G  + LY  GVRGV+N C EYQGP+  Y+  GI QL+LPTVDHFEP++ D    V FI+R  K+G +V VHC+AGHGRS A V  W+L+ +P A P  +     + R VR  L+KQ+N+R F+ +L+   D    + E
Sbjct:   18 VSLGITVG-LYVLNQKHLLPKPLSRIVSKALFWPTLPITVAKRMGSWTTIVDDTVIIGGAPFGFVGIPEQLYDYGVRGVVNFCEEYQGPVKSYRKLGISQLYLPTVDHFEPSVKDLAATVRFIQRHKKQGSRVYVHCRAGHGRSAAGVFAWMLSQDPDADPQTLNEYFCNLRNVRKTLWKQSNVRRFHANLKEIEDDDNGEEE 219          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A6G0XXM2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXM2_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.610e-57
Identity = 103/190 (54.21%), Postives = 128/190 (67.37%), Query Frame = 3
Query:   96 VGVAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQ 665
            + +  GG+YA FQLHLLPK   R V+K+ F+PT PFT L R  +Y+T +D  VFLGA P+  +GHV  L   GVR V+NLC EY+GP+A+YK   I QL LPTVDH EP L D  + V+FI+    RG +V VHCKAG GRS AI   WLL S    +P EVQ+ +N KRRVR +L  Q N+ +FYKSLQ
Sbjct:   30 ISLLVGGVYAAFQLHLLPKPIARVVAKVYFFPTWPFTYLARRSSYYTLVDSHVFLGAVPIVMMGHVSQLVSRGVRAVVNLCDEYEGPVAEYKKNNITQLRLPTVDHTEPTLDDIRKAVEFIEFHKSRGSRVYVHCKAGAGRSAAIAFCWLLKST-GWSPQEVQQFLNEKRRVRRHLDTQPNIIAFYKSLQ 218          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: W4H895_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H895_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.170e-55
Identity = 101/200 (50.50%), Postives = 127/200 (63.50%), Query Frame = 3
Query:   84 LLISVGVAFGGL---YALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQTAS 674
            + +   V  G L   Y +FQLHLLP        K  F+P  PFT L R  NY+T++D+TV LGA PV F+GH+  +   GVRGV+N+C EYQGP+  YK  GI QL +PTVDH EP L D ++ V+FI+   K G +V VHCKAG GRSGAIV  WLL S      +EVQ  M +KRRVR  LYKQ N+ +FY +L  A+
Sbjct:    5 MAVGAAVVVGALAVAYIVFQLHLLPLPLASMAGKFFFFPMWPFTYLARRANYFTEIDDTVILGAVPVVFMGHMSQMAALGVRGVVNVCDEYQGPITAYKKCGIAQLRIPTVDHMEPTLEDILKAVEFIEYHKKLGARVYVHCKAGSGRSGAIVFCWLLKSTKMDL-MEVQDFMRAKRRVRRKLYKQPNVLAFYNTLHPAA 203          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A7S3GYK8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYK8_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.720e-55
Identity = 93/187 (49.73%), Postives = 125/187 (66.84%), Query Frame = 3
Query:  102 VAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSL 662
            V+F   + LFQ  LLPK   + VSKL F+PT P T L R  NYWT++D+T+ LG AP+  LGH   LY  GVRGV+N+C EY GP+A Y   GI+QL+LPT+DH+EP+L      VDFI+    RGE V VHCKA HGR+ +I + W++  N   T  E+   ++SKR+VR  L++Q N+R+F +SL
Sbjct:   39 VSFTFTWLLFQKKLLPKPVSKVVSKLFFYPTFPITALMRAGNYWTKLDDTLILGCAPMDILGHPTALYNLGVRGVVNMCNEYPGPIAKYSTLGIKQLYLPTLDHYEPSLEFMKAAVDFIEEHKARGELVYVHCKAAHGRAASIALCWMMKQNSGKTAKELNNVLSSKRKVRKTLFEQPNVRAFERSL 225          
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Match: A0A485L6Y2_9STRA (Aste57867_17072 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6Y2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 6.890e-55
Identity = 93/188 (49.47%), Postives = 129/188 (68.62%), Query Frame = 3
Query:  102 VAFGGLYALFQLHLLPKSWGRWVSKLVFWPTLPFTMLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGPLADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKAGHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYKSLQ 665
            +  G +YA FQLHLLP+   + V+++ F+PT P T L R  NY+T +D  V+LGA P+ F+GHV  L+  GVR V+NLC EY+GP+A Y+   I QL +PTVDH EP+L+D  + V+FI+    +G +V VHCKAG GRS A+V  W L +NP+ +P EVQ  ++ KR VR  LY Q N+ ++Y+SLQ
Sbjct:   17 LVLGVVYAAFQLHLLPRPIAQVVARIFFFPTWPLTYLSRRSNYFTLVDSHVYLGAVPMVFMGHVSFLHARGVRAVVNLCDEYEGPVATYRKHNITQLRIPTVDHTEPSLSDLRKAVEFIEFHKSQGSRVFVHCKAGSGRSAAVVFCWKLHANPTWSPKEVQLYLSEKRSVRRKLYLQPNIVAYYESLQ 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9091.16925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G226_ECTSI1.120e-10466.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K222_9PHAE3.580e-8163.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX57_9STRA1.860e-6656.38Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A1V9ZPE9_9STRA1.420e-5853.80Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZS93_9STRA1.380e-5748.72Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3L8S0_9STRA2.280e-5748.28Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6G0XXM2_9STRA5.610e-5754.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4H895_9STRA1.170e-5550.50Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S3GYK8_9STRA2.720e-5549.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A485L6Y2_9STRA6.890e-5549.47Aste57867_17072 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9091contigH-paniculata_contig9091:223..3228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue6.6e-66
Seed eggNOG ortholog2880.D7G226
Preferred namePTPMT1
KEGG rclassRC00061
KEGG koko:K03936,ko:K07297,ko:K11339,ko:K14165,ko:K19527
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04152,ko04211,ko04714,ko04723,ko04920,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04152,map04211,map04714,map04723,map04920,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0004439,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006464,GO:0006470,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009966,GO:0009987,GO:0010646,GO:0010648,GO:0010817,GO:0010941,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019637,GO:0019866,GO:0023051,GO:0023057,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0032592,GO:0032879,GO:0032880,GO:0034593,GO:0034595,GO:0036211,GO:0042578,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046676,GO:0046883,GO:0046888,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0050796,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0052866,GO:0060341,GO:0061178,GO:0061179,GO:0065007,GO:0065008,GO:0070201,GO:0071704,GO:0090087,GO:0090276,GO:0090278,GO:0090407,GO:0098573,GO:0106019,GO:0140096,GO:1901564,GO:1901576,GO:1902531,GO:1903530,GO:1903531,GO:1904950,GO:2001233,GO:2001242
EggNOG free text desc.phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
EggNOG OGsKOG1719@1,KOG1719@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-11_003580.1
EC1.6.5.3,1.6.99.3,3.1.3.16,3.1.3.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko03400
Exons5
Model size1370
Cds size510
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.8691278-UTR-H-paniculata_contig9091:222..4281622931133.8691278-UTR-H-paniculata_contig9091:222..428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9091 223..428 +
1691481605.6885972-UTR-H-paniculata_contig9091:222..4281691481605.6885972-UTR-H-paniculata_contig9091:222..428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9091 223..428 +
1622931133.975328-UTR-H-paniculata_contig9091:2574..32281622931133.975328-UTR-H-paniculata_contig9091:2574..3228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9091 2575..3228 +
1691481605.7730138-UTR-H-paniculata_contig9091:2574..32281691481605.7730138-UTR-H-paniculata_contig9091:2574..3228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9091 2575..3228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.8851142-CDS-H-paniculata_contig9091:428..4681622931133.8851142-CDS-H-paniculata_contig9091:428..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 429..468 +
1691481605.708065-CDS-H-paniculata_contig9091:428..4681691481605.708065-CDS-H-paniculata_contig9091:428..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 429..468 +
1622931133.8990047-CDS-H-paniculata_contig9091:719..8801622931133.8990047-CDS-H-paniculata_contig9091:719..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 720..880 +
1691481605.7173524-CDS-H-paniculata_contig9091:719..8801691481605.7173524-CDS-H-paniculata_contig9091:719..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 720..880 +
1622931133.9178314-CDS-H-paniculata_contig9091:1339..14491622931133.9178314-CDS-H-paniculata_contig9091:1339..1449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 1340..1449 +
1691481605.7283869-CDS-H-paniculata_contig9091:1339..14491691481605.7283869-CDS-H-paniculata_contig9091:1339..1449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 1340..1449 +
1622931133.9383733-CDS-H-paniculata_contig9091:1911..19721622931133.9383733-CDS-H-paniculata_contig9091:1911..1972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 1912..1972 +
1691481605.7373016-CDS-H-paniculata_contig9091:1911..19721691481605.7373016-CDS-H-paniculata_contig9091:1911..1972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 1912..1972 +
1622931133.959573-CDS-H-paniculata_contig9091:2436..25741622931133.959573-CDS-H-paniculata_contig9091:2436..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 2437..2574 +
1691481605.7544909-CDS-H-paniculata_contig9091:2436..25741691481605.7544909-CDS-H-paniculata_contig9091:2436..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9091 2437..2574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9091.16925.1prot_H-paniculata_contig9091.16925.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9091 429..2574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9091.16925.1

>prot_H-paniculata_contig9091.16925.1 ID=prot_H-paniculata_contig9091.16925.1|Name=mRNA_H-paniculata_contig9091.16925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MLRRTLNYWTQMDETVFLGAAPVGFLGHVDTLYVSGVRGVINLCGEYQGP
LADYKHFGIEQLWLPTVDHFEPALADYVRGVDFIKRFDKRGEKVLVHCKA
GHGRSGAIVMGWLLASNPSATPLEVQRKMNSKRRVRTYLYKQANLRSFYK
SLQTASDGSGKDRESIKSK*
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mRNA from alignment at H-paniculata_contig9091:223..3228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9091.16925.1 ID=mRNA_H-paniculata_contig9091.16925.1|Name=mRNA_H-paniculata_contig9091.16925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3006bp|location=Sequence derived from alignment at H-paniculata_contig9091:223..3228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCGACGAAATGCTGGACCCCCGGCACCGCCTGAGCCAACCAAATAT GGGCTGTTGGAGGGGCCAATTCCCACCAAGCTTCTACTCATTTCAGTGGG CGTGGCTTTTGGAGGTCTTTATGCCTTGTTTCAGTTGCACCTGTTGCCCA AGTCGTGGGGACGGTGGGTGTCGAAGCTTGTATTTTGGCCGACACTGCCG TTCACCATGCTCCGCCGGACCCTCAACTACTGGACACAAATGGACGGTGA GGACTTTTTCATGTATCTATCCGATAAATAATATGATCGTCGGATTGAGC AATTCATCATTATCACAGACACTCGGGCGAGGATAAAACAACCTAAACGC TGCTTGTGCACGCCGTCAGCGTATATTTACCGCGCTGTCCCAAAAGACAC TTTTGTACAATTTGGGCTCCGCTCCGCTTTCTTCCAGTACAAAACACAAA ACATGTCTCAACATCGCGACCCCTTTCTGTACACACTCCCTTGGCAGAGA CGGTGTTTCTGGGAGCGGCGCCGGTGGGATTTTTAGGACACGTCGACACG CTCTATGTCAGTGGGGTGAGGGGCGTGATCAACCTGTGCGGGGAGTATCA AGGACCACTGGCAGATTACAAACACTTCGGGATAGAGCAGCTTTGGCTGC CGACGGTAGTAAGTGGGTAGTTACTGTTTTTTAGTGGCAAGTTTTTAGGG CACCTGCCACGGCATACCTGACGAGGTGCCTGACTAGTTTATCGCTTGCT AGCTCGTGTATAGGGTTGTAGATGAGATAGCCATCAACATTTGTTAAGAT TTCGGCGGTTGCCTTGGTTGCTTCCAGAATCCTTCAGCAGTAGTAGATGA GCGAAGATATTGTTTTCCTGGAGGAACGATTGAGTGTGTACCACCATGCC ATGTCACGGTTTTACGTACTATAATAGCCGTGCTGCACAACATAACATTT CCTATTTCAACGCTCTGTGCCCCCACGTCGACTGCACGAATCTGTTTTCA TCACTAGCCTCCCTGTGGTGGCTATAAATGTGTATTTGGTCACTGAAGTG TTGACCTAGTCGGTAGTAATTCGACAGTTCGCTGGTGTTCGTTTGTTGAC GCGATGGATACCGACAGGATCATTTCGAACCGGCGCTCGCGGACTACGTC CGCGGCGTGGATTTCATCAAGCGATTCGACAAAAGGGGCGAGAAGGTCCT CGTACACTGTAAAGCTGGTCACGGCAGGTGAGTTTTGAAGGCACACTGAG CACGAACCAGCAGATATTTTCATAGTATCCTGCGCTCCGATATAACCCAG TGGCGCAGGGAAGGTGTGATGATCAGGCAAACAAACGGAAAAGCCGCGCA AGATAGCCTGCAGATACATGCTGAACATGACCTTGCCATGAACTTCCTCA AATCAACTTTTTATCCAGCGAAGAACGCGCCCCGAGAAGAGTAAAAAAAT GTTGTGTATAGTAACAAGCACATGTAATGTCCTTAGAGTTCTGTGCTTCG CATTGACATAGATACGGACACGCGAGTGTACCGATCTATGTTCGGGTAAC CCAGAAAAAATCAATTGGATCCCTCGATTCTCGCACTTGGAAACCCTAAC AGATGTTTCCGGAGATTGACTAGAGGAGCATATTATGTCCCTAATTACCG CTATTCTGTTTCCCATATAACCCCGATGCCCTTTACCAGGAGTGGGGCAA TTGTAATGGGATGGCTGCTAGCGAGCAACCCTAGTGCCACCCCCCTAGAG GTGGGTACGTCTGCAATATTTTTTCCTGGAGGTTCATGTAGTTTTTCGGG AGAACTCTGGGTGACCTCTCCTTGTGTGTTGTGCAGAATCCTATCGGTTA ATTAGTAGCAGCGTGAGGGAGTGGACGCGCCTCGCTTGTTATATCTGCGG GTCATTTTTCTCTCTCCTAAATAGCGTCCCGTTTGTCCCACGTTCGAACT CCAGCGACTGTGAGGGAGGAGCGTGAGAACGGAGAGCGGGTTGAATTATT AAATGCTTTGATGTATTTTCAGGTCGTCTGTTTACTATGAAATTGTGCAA CCATTTATTTCGCAGAAAATGTAATCCTTTCAGCATCCCAACGCTCGCCG ACATCTTCGCAGAGTGTTTTTTTGATTCTGTGGTGTCGTTCAGTTCGATG ACCCTCTCGTAGCCTGAGTCGCGCCGTGCCGCTTTTACATTTTTTGTTGC GTTTTCTCGCGCAGGTGCAGCGGAAGATGAATTCCAAGCGACGTGTGCGT ACGTATTTATATAAGCAGGCAAATCTCCGTTCGTTCTACAAGAGCTTGCA GACAGCGTCGGATGGAAGCGGGAAGGACAGGGAGTCTATTAAATCCAAAT AAACAGCACGATAGTACACAACGGGGGTGGCTTCGGAAATGAGTAGAAAA TCTGCTGAGTAGTCGTTTGCATGGATAGACAGTGTTGGGGGAAGCCCTTT TCTCCCACTCCTGCTCATAACGACCTTCTGCTCAACACTCGTAATCGTGA AAGTGTGCATAGGGGGGAACCCCGTCGTTTGTTGTACAGCTCTTGCCCGT TTTGTATGTACTTCCTGTAGACCGCAAGGGAGATAATTGGTTTGTCGACT CTGTCAATTTTGTTCCGAATATGCATTTTATTCTGGCGGTGGTCTGTCGG CAGGCATGGCTTTGTTACATGCTTAGAGGTACATGGTGGCCCAACCGTAG TACCAGGTTATGTTGCGGGCTGTCTTTGCCGTGGCATGTGTCATTTTGCA GACAAACCATCGGACTAAGCCATCATAGAGGGAGTCGCTCTGTAGACTGC ATCAACTGCAATGTGTACCATGCCGCCGGCGGTCCGGCAGTTTTTAGAGC GTCGGTTTGGTCAGAACGTACAAGTATTTTTCAGTACGTACTCCACCTCT GCAGCGTTCGCCAGCACAATTGTACGTGACAAGGAGCTAAAAAAAGTCAC GTCATGCGGTGACCCAAACATGGGTTGTGCTCGTAAAAAAAAACTAGACA TAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9091:223..3228+

>mRNA_H-paniculata_contig9091.16925.1 ID=mRNA_H-paniculata_contig9091.16925.1|Name=mRNA_H-paniculata_contig9091.16925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig9091:223..3228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCGCCGGACCCTCAACTACTGGACACAAATGGACGATGCTCCGCC
GGACCCTCAACTACTGGACACAAATGGACGAGACGGTGTTTCTGGGAGCG
GCGCCGGTGGGATTTTTAGGACACGTCGACACGCTCTATGTCAGTGGGGT
GAGGGGCGTGATCAACCTGTGCGGGGAGTATCAAGGACCACTGGCAGATT
ACAAACACTTCGGGATAGAGCAGCTTTGGCTGCCGACGGTAAGACGGTGT
TTCTGGGAGCGGCGCCGGTGGGATTTTTAGGACACGTCGACACGCTCTAT
GTCAGTGGGGTGAGGGGCGTGATCAACCTGTGCGGGGAGTATCAAGGACC
ACTGGCAGATTACAAACACTTCGGGATAGAGCAGCTTTGGCTGCCGACGG
TAGATCATTTCGAACCGGCGCTCGCGGACTACGTCCGCGGCGTGGATTTC
ATCAAGCGATTCGACAAAAGGGGCGAGAAGGTCCTCGTACACTGTAAAGC
TGGTCACGGCAGGATCATTTCGAACCGGCGCTCGCGGACTACGTCCGCGG
CGTGGATTTCATCAAGCGATTCGACAAAAGGGGCGAGAAGGTCCTCGTAC
ACTGTAAAGCTGGTCACGGCAGGAGTGGGGCAATTGTAATGGGATGGCTG
CTAGCGAGCAACCCTAGTGCCACCCCCCTAGAGGAGTGGGGCAATTGTAA
TGGGATGGCTGCTAGCGAGCAACCCTAGTGCCACCCCCCTAGAGGTGCAG
CGGAAGATGAATTCCAAGCGACGTGTGCGTACGTATTTATATAAGCAGGC
AAATCTCCGTTCGTTCTACAAGAGCTTGCAGACAGCGTCGGATGGAAGCG
GGAAGGACAGGGAGTCTATTAAATCCAAATAAGTGCAGCGGAAGATGAAT
TCCAAGCGACGTGTGCGTACGTATTTATATAAGCAGGCAAATCTCCGTTC
GTTCTACAAGAGCTTGCAGACAGCGTCGGATGGAAGCGGGAAGGACAGGG
AGTCTATTAAATCCAAATAA
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