mRNA_H-paniculata_contig9084.16917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9084.16917.1
Unique NamemRNA_H-paniculata_contig9084.16917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: D7FP44_ECTSI (Sirohydrochlorin ferrochelatase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP44_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.010e-46
Identity = 74/92 (80.43%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 QAAHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKG 276
            +AAHMELAEP+IE+AFDRCVAAGA+K+VLHPFFLSPGRHV SDIPALM  AA RHP V WVVSEPLGLQELMPRVMHAA+ ES+A G+W  G
Sbjct:  122 EAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPALMVAAAKRHPGVGWVVSEPLGLQELMPRVMHAAVSESVAGGAWRHG 213          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A836CEJ2_9STRA (CbiX-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.160e-36
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    1 QAAHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKG 276
            + AHMELAEPTIEQAFD+CVAAGAK +VLHPFFLSPGRHV SDIP L+  AA RHP V W VSEPLGL  LMP++M+ A+  ++    W  G
Sbjct:   27 EVAHMELAEPTIEQAFDKCVAAGAKAVVLHPFFLSPGRHVSSDIPELLAAAASRHPGVKWKVSEPLGLAPLMPQLMNDAVAAALQEPEWQGG 118          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A7G9NWY9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NWY9_9BACT)

HSP 1 Score: 105 bits (261), Expect = 1.010e-26
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESI 252
            AHMELAEPTIEQAFDRCV  GAK +V HPFFL PG+H   DIP L   AA +HP + W+V+ P+G+ E MP VM+ AI+  +
Sbjct:   47 AHMELAEPTIEQAFDRCVQRGAKVVVCHPFFLLPGKHWNQDIPNLTAAAAGKHPGIRWMVTAPIGMNEKMPLVMNDAIDHCL 128          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A518DNN6_9BACT (Sirohydrochlorin cobaltochelatase n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DNN6_9BACT)

HSP 1 Score: 100 bits (248), Expect = 4.710e-25
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGS 264
            AHMELAEPT++ AFDRC+A GA++IV+HP+FL PG H   DIP L   AA R PDV +VV+EPLGL  L+ +V+   I  ++A  S
Sbjct:   44 AHMELAEPTLQTAFDRCIARGAEQIVVHPYFLLPGNHSREDIPRLAAEAAARRPDVPYVVTEPLGLHPLLGQVIRDRIAAALAENS 129          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: UPI001C3CA215 (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CA215)

HSP 1 Score: 99.0 bits (245), Expect = 3.100e-24
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIA 255
            AHMELAEP+I  AFD CVA GA+ +V+ P+FL PGRH   DIPAL++ AA RHP VA++V+ P GL  LM  V+ A +E  +A
Sbjct:   47 AHMELAEPSISDAFDACVARGARTVVVSPYFLLPGRHWRQDIPALVEEAAARHPGVAYLVAAPFGLHPLMAEVVSARVEHCLA 129          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A4D9D8W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.830e-24
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKGDRDD 288
            AHMEL EP+I  AF RCV  GA  I+ HPFFLS GRHV  DIP L++ AA   P V W +S+PLGLQ  +PR+M  A+EE IA  +    D  D
Sbjct:   94 AHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHAD 187          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A350CGA9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A350CGA9_9PLAN)

HSP 1 Score: 97.1 bits (240), Expect = 9.310e-24
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESI 252
            AHMELAEP+I+QAFDRCVA GA++IV+ P+FLSPGRH   DIP L++ AA  HP+V W+V+ P GL + + + +   I+ S+
Sbjct:   45 AHMELAEPSIQQAFDRCVARGARRIVVFPWFLSPGRHWTEDIPGLVEQAAAVHPEVQWLVTPPFGLHQGLLQAVSERIDVSL 126          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: A0A518C237_9BACT (Sirohydrochlorin cobaltochelatase n=2 Tax=Bremerella TaxID=2714594 RepID=A0A518C237_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.040e-23
Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIA 255
            AHMEL EP+I QAF +CV  GA +IV+HP+FLSPGRH   DIP L Q AA  HP +  +V+ PLGL  LM +VM   IE  +A
Sbjct:   48 AHMELVEPSIAQAFQKCVGQGATRIVVHPYFLSPGRHWHEDIPRLAQEAAANHPGITHLVTAPLGLHPLMAKVMQERIETCLA 130          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: E1Z3E3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3E3_CHLVA)

HSP 1 Score: 97.4 bits (241), Expect = 1.180e-23
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 QAAHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKGDR 282
            + AHMELAEPTIEQA  RC AAGA+++V+ P+FLS GRHV  DIPAL   AA  HP V  VV+EP+G+  LM +++ + +  +   G+ H   R
Sbjct:   66 EVAHMELAEPTIEQAVGRCAAAGARRVVVAPYFLSRGRHVQQDIPALAAAAAAAHPSVECVVAEPIGIDSLMAQLIESRVRAA-EGGAAHDHSR 158          
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Match: W7TSP7_9STRA (Cobalamin (Vitamin B12) biosynthesis CbiX n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSP7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.450e-23
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    7 AHMELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVRHPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKGDRDD 288
            AHMEL EP+I  AF RCV  GA  I+ HPFFLS GRHV  DIP L++ AA   P V W +S+PLGLQ  +PR+M  A+EE IA  +    D  D
Sbjct:  155 AHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHAD 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9084.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP44_ECTSI1.010e-4680.43Sirohydrochlorin ferrochelatase, putative chloropl... [more]
A0A836CEJ2_9STRA2.160e-3666.30CbiX-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7G9NWY9_9BACT1.010e-2659.76Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A518DNN6_9BACT4.710e-2555.81Sirohydrochlorin cobaltochelatase n=1 Tax=Lignipir... [more]
UPI001C3CA2153.100e-2456.63hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
A0A4D9D8W1_9STRA3.830e-2454.26Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A350CGA9_9PLAN9.310e-2454.88Uncharacterized protein n=2 Tax=Planctomycetia Tax... [more]
A0A518C237_9BACT1.040e-2356.63Sirohydrochlorin cobaltochelatase n=2 Tax=Bremerel... [more]
E1Z3E3_CHLVA1.180e-2351.06Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
W7TSP7_9STRA1.450e-2354.26Cobalamin (Vitamin B12) biosynthesis CbiX n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9084contigH-paniculata_contig9084:1738..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.5e-35
Seed eggNOG ortholog2880.D7FP44
KEGG rclassRC01012
KEGG koko:K03794
KEGG ReactionR02864
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016829,GO:0018130,GO:0019354,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046156,GO:0046483,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051266,GO:0051536,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sirohydrochlorin cobaltochelatase activity
EggNOG OGs2RXIW@2759,COG2138@1
Ec32 ortholog descriptionsirohydrochlorin ferrochelatase, putative chloroplast precursor
Ec32 orthologEc-10_002430.1
EC4.99.1.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size303
Cds size291
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.7705758-UTR-H-paniculata_contig9084:1737..17491622931132.7705758-UTR-H-paniculata_contig9084:1737..1749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9084 1738..1749 +
1691481605.1265314-UTR-H-paniculata_contig9084:1737..17491691481605.1265314-UTR-H-paniculata_contig9084:1737..1749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9084 1738..1749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.7863307-CDS-H-paniculata_contig9084:1749..20401622931132.7863307-CDS-H-paniculata_contig9084:1749..2040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9084 1750..2040 +
1691481605.1385493-CDS-H-paniculata_contig9084:1749..20401691481605.1385493-CDS-H-paniculata_contig9084:1749..2040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9084 1750..2040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9084.16917.1prot_H-paniculata_contig9084.16917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9084 1750..2040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9084.16917.1

>prot_H-paniculata_contig9084.16917.1 ID=prot_H-paniculata_contig9084.16917.1|Name=mRNA_H-paniculata_contig9084.16917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MELAEPTIEQAFDRCVAAGAKKIVLHPFFLSPGRHVMSDIPALMQGAAVR
HPDVAWVVSEPLGLQELMPRVMHAAIEESIAAGSWHKGDRDDSAII*
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mRNA from alignment at H-paniculata_contig9084:1738..2040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9084.16917.1 ID=mRNA_H-paniculata_contig9084.16917.1|Name=mRNA_H-paniculata_contig9084.16917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig9084:1738..2040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAGCCCACATGGAATTGGCAGAGCCAACGATCGAACAGGCCTTCGA CCGTTGCGTTGCCGCTGGCGCGAAGAAGATAGTTCTCCACCCGTTCTTTC TTAGTCCCGGTAGGCATGTGATGAGCGACATCCCCGCGCTAATGCAAGGG GCGGCGGTGCGGCACCCCGACGTGGCTTGGGTAGTCTCCGAGCCTTTGGG GCTACAGGAGTTGATGCCACGAGTTATGCACGCGGCGATTGAAGAGTCGA TAGCGGCAGGATCGTGGCATAAAGGTGACAGGGACGACAGTGCTATCATT TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9084:1738..2040+

>mRNA_H-paniculata_contig9084.16917.1 ID=mRNA_H-paniculata_contig9084.16917.1|Name=mRNA_H-paniculata_contig9084.16917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig9084:1738..2040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATTGGCAGAGCCAACGATCGAACAGGCCTTCGACCGTTGCGTTGC
CGCTGGCGCGAAGAAGATAGTTCTCCACCCGTTCTTTCTTAGTCCCGGTA
GGCATGTGATGAGCGACATCCCCGCGCTAATGCAAGGGGCGGCGGTGCGG
CACCCCGACGTGGCTTGGGTAGTCTCCGAGCCTTTGGGGCTACAGGAGTT
GATGCCACGAGTTATGCACGCGGCGATTGAAGAGTCGATAGCGGCAGGAT
CGTGGCATAAAGGTGACAGGGACGACAGTGCTATCATTTGAATGGAATTG
GCAGAGCCAACGATCGAACAGGCCTTCGACCGTTGCGTTGCCGCTGGCGC
GAAGAAGATAGTTCTCCACCCGTTCTTTCTTAGTCCCGGTAGGCATGTGA
TGAGCGACATCCCCGCGCTAATGCAAGGGGCGGCGGTGCGGCACCCCGAC
GTGGCTTGGGTAGTCTCCGAGCCTTTGGGGCTACAGGAGTTGATGCCACG
AGTTATGCACGCGGCGATTGAAGAGTCGATAGCGGCAGGATCGTGGCATA
AAGGTGACAGGGACGACAGTGCTATCATTTGA
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