mRNA_H-paniculata_contig9078.16912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9078.16912.1
Unique NamemRNA_H-paniculata_contig9078.16912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A834TZW5_9FABA (Putative mitochondrial protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TZW5_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 3.760e-6
Identity = 23/64 (35.94%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    7 MANPEENVLLDEQGTRDYQTIVGSLILTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYL 198
            ++ PEE+  +D      Y+++VGSL+   +TR+D+ FA S  + ++  P  VHMG+ +C+ RY+
Sbjct:   23 LSKPEEDEKVDGS---IYRSLVGSLLYLTATRLDLMFAASLLSRYMQTPGEVHMGVARCVLRYI 83          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: UPI00073A5024 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A5024)

HSP 1 Score: 51.2 bits (121), Expect = 6.360e-6
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   58 YQTIVGSLILTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYL 198
            Y++++GSL+   STR DI F  S  + F+  P+ VH+G+ KC+ RYL
Sbjct:   30 YRSLIGSLLYLTSTRPDIMFVASLLSRFMQEPSQVHLGVTKCVLRYL 76          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A4C1ZTN1_EUMVA (Copia protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZTN1_EUMVA)

HSP 1 Score: 50.4 bits (119), Expect = 7.510e-6
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   58 YQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            YQ  +G L+ L+Q TR DI + V+  + +   PT+ H   +K + RYL      KL+++G+S   +TG+C+
Sbjct:   32 YQEAIGCLLYLSQGTRPDITYIVNSLSRYNGQPTAEHWTTLKRVFRYLKATIDYKLTYHGNSEGNITGYCD 102          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A1U8KNP8_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=3 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8KNP8_GOSHI)

HSP 1 Score: 51.2 bits (121), Expect = 1.560e-5
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   55 DYQTIVGSLILTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            +Y+++ G+L     TR DIA+AV++   F+ NPT+VHMG +K I RYL       +      +  L GF +
Sbjct:   36 EYRSLAGALQYVVITRPDIAYAVNRVCQFMHNPTTVHMGALKRILRYLAGTLDFGIMFRRSGSLSLVGFSD 106          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A401KYS2_ASPAW (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Aspergillus awamori TaxID=105351 RepID=A0A401KYS2_ASPAW)

HSP 1 Score: 51.2 bits (121), Expect = 1.970e-5
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   58 YQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            YQ IVGSL+ +   TR D+A+AVS A+ ++ANP   HM + + I RYL     L+L++ G     L GF +
Sbjct:  708 YQRIVGSLMYIMLGTRGDVAYAVSMASRYLANPGPQHMNLARRILRYLNGTKGLRLTYKGQPQM-LKGFTD 777          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A8H4GR71_9EURO (Integrase catalytic domain-containing protein n=1 Tax=Aspergillus fumigatiaffinis TaxID=340414 RepID=A0A8H4GR71_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-5
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   58 YQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            YQ IVGSL+ +   TR D+A+AVS A+ ++ANP   HM + + I RYL     L+L++ G     L GF +
Sbjct: 1310 YQRIVGSLMYIMLGTRGDVAYAVSMASRYLANPGPQHMKLARRILRYLNGTKNLRLTYKGQPQM-LKGFTD 1379          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A8H6UJQ1_9EURO (Integrase catalytic domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6UJQ1_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-5
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   13 NPEENVLLDEQGTRDYQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            +PE     D++ T  YQ +VGSL+ +   TR D+A+AVS A+ ++ANP   HM + + I RYL    +L+L++ G     L GF +
Sbjct: 1298 SPEYRCPPDQRTT--YQRLVGSLMYIMLGTRGDVAYAVSVASRYLANPGPQHMKLARRILRYLNGTKRLRLTYKGHHQM-LKGFTD 1380          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A1V6Q5E1_9EURO (Integrase catalytic domain-containing protein n=1 Tax=Penicillium solitum TaxID=60172 RepID=A0A1V6Q5E1_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 2.670e-5
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   13 NPEENVLLDEQGTRDYQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            +PE     D++ T  YQ IVGSL+ +   TR D+A+A+S A+ ++ANP   HM + + I RYL     L+L++ G     L GF +
Sbjct:  699 SPEYRCSPDQRTT--YQRIVGSLMYIMLGTRGDVAYAISMASGYLANPGPQHMKLARRILRYLNSTKCLRLTYKGHPQM-LKGFTD 781          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A4C1T256_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T256_EUMVA)

HSP 1 Score: 50.8 bits (120), Expect = 2.710e-5
Identity = 29/87 (33.33%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   10 ANPEENVLLDEQGTRDYQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            A  EE +L +      YQ  +G L+ L+Q TR DI + V+  + +   PT+ H   +K + RYL      KL+++G+S   +TG+C+
Sbjct:  906 AESEEEILRNVP----YQEAIGCLLYLSQGTRPDITYIVNSLSRYNGQPTAEHWTTLKRVFRYLKATIDYKLTYHGNSEGNITGYCD 988          
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Match: A0A1V6X2P3_PENNA (Integrase catalytic domain-containing protein n=2 Tax=Penicillium nalgiovense TaxID=60175 RepID=A0A1V6X2P3_PENNA)

HSP 1 Score: 50.8 bits (120), Expect = 2.750e-5
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   13 NPEENVLLDEQGTRDYQTIVGSLI-LTQSTRMDIAFAVSQAALFVANPTSVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE 267
            +PE     D++ T  YQ IVGSL+ +   TR D+A+AVS A+ ++ANP   HM + + I RYL     L+L++ G     L GF +
Sbjct: 1768 SPEYRCPPDQRTT--YQRIVGSLMYIMLGTRGDVAYAVSMASRYLANPGPQHMKLARRILRYLNGTKCLRLTYKGHPQM-LKGFTD 1850          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9078.16912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A834TZW5_9FABA3.760e-635.94Putative mitochondrial protein n=1 Tax=Senna tora ... [more]
UPI00073A50246.360e-644.68uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A4C1ZTN1_EUMVA7.510e-635.21Copia protein n=1 Tax=Eumeta variegata TaxID=15154... [more]
A0A1U8KNP8_GOSHI1.560e-536.62uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A401KYS2_ASPAW1.970e-542.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H4GR71_9EURO2.000e-542.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H6UJQ1_9EURO2.000e-538.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A1V6Q5E1_9EURO2.670e-538.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A4C1T256_EUMVA2.710e-533.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A1V6X2P3_PENNA2.750e-539.53Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9078contigH-paniculata_contig9078:5190..5456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size261
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.1779306-UTR-H-paniculata_contig9078:5189..51951622931132.1779306-UTR-H-paniculata_contig9078:5189..5195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9078 5190..5195 +
1691481604.8671353-UTR-H-paniculata_contig9078:5189..51951691481604.8671353-UTR-H-paniculata_contig9078:5189..5195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9078 5190..5195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.198156-CDS-H-paniculata_contig9078:5195..54561622931132.198156-CDS-H-paniculata_contig9078:5195..5456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9078 5196..5456 +
1691481604.8822815-CDS-H-paniculata_contig9078:5195..54561691481604.8822815-CDS-H-paniculata_contig9078:5195..5456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9078 5196..5456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9078.16912.1prot_H-paniculata_contig9078.16912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9078 5196..5456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9078.16912.1

>prot_H-paniculata_contig9078.16912.1 ID=prot_H-paniculata_contig9078.16912.1|Name=mRNA_H-paniculata_contig9078.16912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MANPEENVLLDEQGTRDYQTIVGSLILTQSTRMDIAFAVSQAALFVANPT
SVHMGIVKCISRYLGIAPKLKLSHNGDSNFELTGFCE
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mRNA from alignment at H-paniculata_contig9078:5190..5456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9078.16912.1 ID=mRNA_H-paniculata_contig9078.16912.1|Name=mRNA_H-paniculata_contig9078.16912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig9078:5190..5456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGATGGCAAACCCTGAAGAAAATGTTTTACTGGACGAACAAGGTAC AAGAGATTATCAAACCATTGTGGGGAGTCTCATTTTGACTCAGTCTACGC GTATGGACATAGCGTTCGCTGTCTCACAAGCGGCGCTCTTCGTGGCCAAT CCTACCTCCGTTCACATGGGAATCGTGAAGTGCATCTCGCGCTACCTTGG AATTGCGCCGAAACTAAAACTCTCCCACAATGGCGACTCCAACTTCGAGC TAACCGGCTTCTGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9078:5190..5456+

>mRNA_H-paniculata_contig9078.16912.1 ID=mRNA_H-paniculata_contig9078.16912.1|Name=mRNA_H-paniculata_contig9078.16912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig9078:5190..5456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAACCCTGAAGAAAATGTTTTACTGGACGAACAAGGTACAAGAGA
TTATCAAACCATTGTGGGGAGTCTCATTTTGACTCAGTCTACGCGTATGG
ACATAGCGTTCGCTGTCTCACAAGCGGCGCTCTTCGTGGCCAATCCTACC
TCCGTTCACATGGGAATCGTGAAGTGCATCTCGCGCTACCTTGGAATTGC
GCCGAAACTAAAACTCTCCCACAATGGCGACTCCAACTTCGAGCTAACCG
GCTTCTGCGAGATGGCAAACCCTGAAGAAAATGTTTTACTGGACGAACAA
GGTACAAGAGATTATCAAACCATTGTGGGGAGTCTCATTTTGACTCAGTC
TACGCGTATGGACATAGCGTTCGCTGTCTCACAAGCGGCGCTCTTCGTGG
CCAATCCTACCTCCGTTCACATGGGAATCGTGAAGTGCATCTCGCGCTAC
CTTGGAATTGCGCCGAAACTAAAACTCTCCCACAATGGCGACTCCAACTT
CGAGCTAACCGGCTTCTGCGAG
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