mRNA_H-paniculata_contig9076.16910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9076.16910.1
Unique NamemRNA_H-paniculata_contig9076.16910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: D7FXI6_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.650e-37
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H +HDEL +PVIDNTA E DLADSL+ AI  YPKSNAVLV RHGCYVWGPTWEKAKTQSECLHYL EAAVKM+  GFD
Sbjct:   13 HGFHDELEIPVIDNTANEADLADSLAEAITNYPKSNAVLVQRHGCYVWGPTWEKAKTQSECLHYLLEAAVKMDAVGFD 90
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A6H5JCG2_9PHAE (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.430e-36
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H +HDEL +PVIDNTA E DLADSL+ AI  YPKSNAVLV RHGCYVWGPTWEKAKTQSECLHYL EAAVKM+  GFD
Sbjct:  338 HGFHDELEIPVIDNTADEADLADSLAEAITNYPKSNAVLVQRHGCYVWGPTWEKAKTQSECLHYLLEAAVKMDAVGFD 415
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A835Z2U4_9STRA (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.400e-32
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H YHD+LV+P+I+NTA EEDLADSL+ AI  +P++NAVLV RHG YVWGP+WEKAKTQSECLHYLFE  V+M + G D
Sbjct:  160 HGYHDDLVIPIIENTAHEEDLADSLAAAIRAHPRANAVLVRRHGLYVWGPSWEKAKTQSECLHYLFECVVRMAELGAD 237
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A7S3XX92_HETAK (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX92_HETAK)

HSP 1 Score: 122 bits (305), Expect = 3.250e-31
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKM 234
            H YHDELV+P+I+NTA EEDLADSL  AI  +P++NAVLVARHG YVWGPTW KAKTQ+ECLHYLF  AVKM
Sbjct:  305 HGYHDELVIPIIENTAHEEDLADSLEKAIRAHPQANAVLVARHGIYVWGPTWGKAKTQAECLHYLFGLAVKM 376
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A0G4EC74_VITBC (Probable methylthioribulose-1-phosphate dehydratase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EC74_VITBC)

HSP 1 Score: 115 bits (288), Expect = 6.070e-30
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H YHD LVVP+I+NTA E DLAD L+ AI  YPK+ AVLV RHG YVWG +W +AKTQ+ECL YLFEAAV+M+Q G D
Sbjct:  134 HGYHDHLVVPIIENTAHECDLADDLTAAIKAYPKAAAVLVRRHGVYVWGDSWVQAKTQAECLDYLFEAAVRMKQLGID 211
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: L8H9E4_ACACA (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H9E4_ACACA)

HSP 1 Score: 114 bits (285), Expect = 6.340e-30
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   25 YHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            YHDELVVP+I+NTA E DL +S+  AI  YPK+ AVLV RHG Y+WG TWE AKTQ+EC  YLFEAA+KM+Q G D
Sbjct:  132 YHDELVVPIIENTAHEADLKESMDQAIKAYPKATAVLVRRHGVYIWGDTWEHAKTQAECYDYLFEAAIKMKQLGLD 207
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A2D9TE22_9DELT (Methylthioribulose 1-phosphate dehydratase n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TE22_9DELT)

HSP 1 Score: 112 bits (279), Expect = 4.710e-29
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H YHDELVVP+I+NTA E DLADS+  AI  YPK+ AVLV RHG YVWG  W +AK  +EC  YLFEAAVKM Q G D
Sbjct:  124 HGYHDELVVPIIENTAHEHDLADSMGEAIRAYPKAFAVLVRRHGVYVWGKDWAEAKRHAECYDYLFEAAVKMRQLGVD 201
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A0C2XH68_9AGAM (Methylthioribulose-1-phosphate dehydratase n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XH68_9AGAM)

HSP 1 Score: 112 bits (279), Expect = 1.200e-28
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   22 SYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            SY DELVVP+I+NT  EEDL DS++ AI  YPK+ AVLV RHG YVWG TWE AKTQ+ECL YLFE AVKM  AG D
Sbjct:  171 SYLDELVVPIIENTPHEEDLRDSMAQAIKDYPKAAAVLVRRHGVYVWGSTWELAKTQAECLDYLFELAVKMRLAGID 247
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A5B6ZE58_DAVIN (Aldolase_II domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZE58_DAVIN)

HSP 1 Score: 112 bits (279), Expect = 1.230e-28
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H YHDELVVP+I+NTA E +L +SL+ AI  YPK+ AVLV  HG Y+WG +W  AKTQ+EC HYLF+AA+K+ Q G D
Sbjct:   67 HGYHDELVVPIIENTAHERELTESLTEAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQMGLD 144
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BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Match: A0A2I0I0Z3_PUNGR (Aldolase_II domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I0Z3_PUNGR)

HSP 1 Score: 108 bits (271), Expect = 1.810e-28
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   19 HSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHGCYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD 252
            H Y+DELVVP+I+NTA E +L +SL+ AI  YPK+ AVLV  HG Y+WG TW  AKTQ+EC HYLF+AA+K+ Q G D
Sbjct:    8 HGYYDELVVPIIENTAYEYELTESLTKAIEAYPKATAVLVRNHGIYIWGDTWISAKTQAECYHYLFDAALKLRQLGID 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9076.16910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXI6_ECTSI4.650e-3780.77Haloacid dehalogenase-like hydrolase family protei... [more]
A0A6H5JCG2_9PHAE4.430e-3680.77Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A835Z2U4_9STRA1.400e-3270.51Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A7S3XX92_HETAK3.250e-3176.39Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A0G4EC74_VITBC6.070e-3067.95Probable methylthioribulose-1-phosphate dehydratas... [more]
L8H9E4_ACACA6.340e-3067.11Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A2D9TE22_9DELT4.710e-2966.67Methylthioribulose 1-phosphate dehydratase n=1 Tax... [more]
A0A0C2XH68_9AGAM1.200e-2870.13Methylthioribulose-1-phosphate dehydratase n=1 Tax... [more]
A0A5B6ZE58_DAVIN1.230e-2861.54Aldolase_II domain-containing protein (Fragment) n... [more]
A0A2I0I0Z3_PUNGR1.810e-2861.54Aldolase_II domain-containing protein n=1 Tax=Puni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9076contigH-paniculata_contig9076:376..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7.5e-31
Seed eggNOG ortholog2880.D7FXI6
Preferred nameMDE1
KEGG rclassRC01866,RC01939,RC02018,RC02118,RC02779
KEGG koko:K08964,ko:K08967,ko:K09880,ko:K16054
KEGG ReactionR07363,R07364,R07392,R07395
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0001932,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012501,GO:0016043,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019220,GO:0019222,GO:0019509,GO:0019752,GO:0022607,GO:0023051,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0042578,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043094,GO:0043102,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043436,GO:0043874,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046570,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0060548,GO:0065003,GO:0065007,GO:0070269,GO:0070372,GO:0071265,GO:0071267,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902531
EggNOG free text desc.acireductone synthase activity
EggNOG OGsCOG0235@1,COG4229@1,KOG2630@2759,KOG2631@2759
EC1.13.11.53,1.13.11.54,3.1.3.77,4.2.1.109
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.1241074-CDS-H-paniculata_contig9076:375..5171622931132.1241074-CDS-H-paniculata_contig9076:375..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9076 376..517 -
1691481604.8393564-CDS-H-paniculata_contig9076:375..5171691481604.8393564-CDS-H-paniculata_contig9076:375..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9076 376..517 -
1622931132.1387386-CDS-H-paniculata_contig9076:662..7721622931132.1387386-CDS-H-paniculata_contig9076:662..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9076 663..772 -
1691481604.8505058-CDS-H-paniculata_contig9076:662..7721691481604.8505058-CDS-H-paniculata_contig9076:662..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9076 663..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9076.16910.1prot_H-paniculata_contig9076.16910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9076 376..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9076.16910.1

>prot_H-paniculata_contig9076.16910.1 ID=prot_H-paniculata_contig9076.16910.1|Name=mRNA_H-paniculata_contig9076.16910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MIQKCRHSYHDELVVPVIDNTAREEDLADSLSGAILRYPKSNAVLVARHG
CYVWGPTWEKAKTQSECLHYLFEAAVKMEQAGFD
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mRNA from alignment at H-paniculata_contig9076:376..772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9076.16910.1 ID=mRNA_H-paniculata_contig9076.16910.1|Name=mRNA_H-paniculata_contig9076.16910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=397bp|location=Sequence derived from alignment at H-paniculata_contig9076:376..772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCAAAAATGCAGGCATTCGTACCATGACGAGCTGGTGGTGCCTGT
GATCGATAACACGGCGCGTGAAGAAGATCTTGCGGACTCTCTGTCAGGGG
CCATATTAAGGTATGTTTTTTTTGGGTGAGGTTGTACATATAGATCGTGA
GGCTAACACTAATAGAGGGCGTTTTTTTGGGGGGGGGGTTTCAAGTGAGG
TTGTGTATACTGACTGAATATGTATGACTATAAATGTTTGATTGAACGAC
GACAGGTATCCCAAGTCGAACGCGGTTTTGGTGGCGCGACATGGGTGCTA
CGTATGGGGTCCGACATGGGAGAAAGCGAAGACGCAAAGCGAGTGCCTGC
ACTACCTTTTCGAGGCAGCGGTCAAAATGGAACAGGCTGGGTTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig9076:376..772-

>mRNA_H-paniculata_contig9076.16910.1 ID=mRNA_H-paniculata_contig9076.16910.1|Name=mRNA_H-paniculata_contig9076.16910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig9076:376..772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCAAAAATGCAGGCATTCGTACCATGACGAGCTGGTGGTGCCTGT
GATCGATAACACGGCGCGTGAAGAAGATCTTGCGGACTCTCTGTCAGGGG
CCATATTAAGATGATCCAAAAATGCAGGCATTCGTACCATGACGAGCTGG
TGGTGCCTGTGATCGATAACACGGCGCGTGAAGAAGATCTTGCGGACTCT
CTGTCAGGGGCCATATTAAGGTATCCCAAGTCGAACGCGGTTTTGGTGGC
GCGACATGGGTGCTACGTATGGGGTCCGACATGGGAGAAAGCGAAGACGC
AAAGCGAGTGCCTGCACTACCTTTTCGAGGCAGCGGTCAAAATGGAACAG
GCTGGGTTCGACGTATCCCAAGTCGAACGCGGTTTTGGTGGCGCGACATG
GGTGCTACGTATGGGGTCCGACATGGGAGAAAGCGAAGACGCAAAGCGAG
TGCCTGCACTACCTTTTCGAGGCAGCGGTCAAAATGGAACAGGCTGGGTT
CGAC
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