mRNA_H-paniculata_contig9073.16907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9073.16907.1
Unique NamemRNA_H-paniculata_contig9073.16907.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: D7FGQ8_ECTSI (RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ8_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 5.990e-180
Identity = 266/413 (64.41%), Postives = 318/413 (77.00%), Query Frame = 1 
Query:    1 IVASVTLFQVVRVTGRLCCAEYHVQVRREVSGDSWFVVRRYSDFRQLYDNLPRPFAAITPPLPPKSWRSLSFLSMTPEFLEDRRVALEVALRRLAINAVRADSTVQADVRAFLGFPPCPGRGLLAGVDAEVARHLARVPPQLELSLPERGPRPVSLLNNLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRTNVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGG-VTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDADSIIDLAEAAMEK 1236
            +V ++   +VVRV+G +CCAEY +QV+R   GDSWFV+RRYSDF  LY+ LP    A   P+PPKSWRS+SFLSMTPEFLE+RRVALEVALRRLAI+AV++D  VQAD+RAFLGFPPC G G LAGVD+ VAR+L R+P  LELSLP R   PV LL NLRV MWMLLSGAA+K+S+ EDREQY ALVSV DE +WCR+GG A  Y  AA    TI  DVNRTNV  S ERER+RRVLRAFALK P T YCQGMNSVALFLLRTA GRED+ FWLL +L   V+ GHW+ LSHI++   G VT+R+L+ E  P LLEHLD R LPPE+L CDF LSLGCR+LPP ++ R  D++F EGG+ L+Y+A AVLHLA+  L+ VQGA ATS+ LA CT SM DAD +I++A + M +
Sbjct:   17 VVTAIPRVEVVRVSGTICCAEYQLQVKRR-RGDSWFVLRRYSDFLTLYERLPSDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADLRAFLGFPPCGGAGRLAGVDSHVARYLIRLPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGAGTVTIRMLLGERTPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALVYIAFAVLHLAEGNLVVVQGAPATSEALANCTASMQDADRLIEIARSEMAR 424
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BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 524 bits (1349), Expect = 2.510e-175
Identity = 269/413 (65.13%), Postives = 324/413 (78.45%), Query Frame = 1 
Query:    1 IVASVTLFQVVRVTGRLCCAEYHVQVRREVSGDSWFVVRRYSDFRQLYDNLPRPFAAITPPLPPKSWRSLSFLSMTPEFLEDRRVALEVALRRLAINAVRADSTVQADVRAFLGFPPCPGRGLLAGVDAEVARHLARVPPQLELSLPERGPRPVSLLNNLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRTNVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGG-VTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDADSIIDLAEAAMEK 1236
            +V ++   +VVRV+G +CCAEY +QV+R+  GDSWFV+RRYSDF +LY++LP    A   P+PPKSWRS+SFLSMTPEFLE+RRVALEVALRRLAI+AV++D  VQADVRAFLGFPPC G G LAGVD+ VA++L RVP  LELSLP R   PV LL NLRV MWMLLSGAA+K+S+ EDREQY ALVSV DE +WCR+GG A  Y  AA    TI  DVNRTNV  S ERER+RRVLRAFALK P T YCQGMNSVALFLLRTA GRED+ FWLL +L   V+ GHW+ LSHI++   G VT+R+L+ E +P LLEHLD R LPPE+L CDF LSLGCR+LPP ++ R  D++F EGG+ L+Y+ALAVLHLA+  L+ VQGA ATS+ LAKCT SM DAD +I++A + M +
Sbjct:  536 VVTAIPRVEVVRVSGTICCAEYQLQVKRK-RGDSWFVLRRYSDFLRLYEHLPIDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADVRAFLGFPPCEGAGRLAGVDSRVAQYLIRVPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGTGTVTIRMLLGERMPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALIYIALAVLHLAEGSLVVVQGAPATSEALAKCTASMQDADRLIEIARSEMAR 943
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A835YP93_9STRA (Rab-GTPase-TBC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP93_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.060e-31
Identity = 66/127 (51.97%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:  760 MNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGGV-TLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGV 1137
            MN VALFLLRTA GRED+ FWLL AL   V P +W+G + ++     +  LR L    +P L++ LD  GLP E+LACD+ LSL CR LPP +VLRV D L  EG + L++VALAVL  A++++L V
Sbjct:    1 MNFVALFLLRTARGREDVSFWLLRALACDVAPRYWEGTTSMARLRADLGVLRGLACARMPPLVKRLDDTGLPLELLACDWMLSLFCRVLPPRTVLRVWDWLLLEGADVLVFVALAVLRFAEEDVLQV 127
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BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A7S2BGU4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGU4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.630e-25
Identity = 67/178 (37.64%), Postives = 98/178 (55.06%), Query Frame = 1 
Query:  694 ERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGGVTLRIL---MDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDADSIIDLA 1218
            +R+RR+LRAF L  P  GYCQ MN VALFLLRT   +E   F LL  L   V+PG+W            V +++L   +D  LP L +H+    +P ++ A  + +SL   ALPP S+ R+ D LF +G   L+ V LA++  A+  LLG+      ++ L     +  DAD ++D+A
Sbjct:    1 QRLRRILRAFVLSKPCIGYCQAMNYVALFLLRTTKYQEHEAFQLLLTLAEQVVPGYWVP----DMVGVQVDMQVLHKAVDIFLPDLSDHMRDIRMPLDLFAIQWLVSLFSYALPPPSLCRIWDWLFLDGPSVLVSVTLAIMRRAESGLLGLYDLQDCAELLLNTARNWRDADELVDMA 174
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A3F2RY14_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY14_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.430e-21
Identity = 80/252 (31.75%), Postives = 115/252 (45.63%), Query Frame = 1 
Query:  475 NLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRT------NVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGGVTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDADSIID 1212
            +LR   +M LSGA+ K    E  E Y  LV   +  E                 FR I+ D++RT       V     R ++RR+LRA++L+NPS GYCQG+N +  FL+  AD  E+  FWLL      + PG++        T+  + L+ L+ E LPQL E     GLP E+L   + L L     P  +V RV D +F EG   +    +A L   +  LL +         +     +  D DS +D
Sbjct:  120 HLRERAYMSLSGASEKQE-NEGAEYYANLVKEAETME--------------TDTFRQIELDIDRTFGHSGTTVCTDSGRAQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLIAD--EEAVFWLLSVFCEDLYPGYYTPTMADIQTDM-LVLKQLIAEELPQLDEFTSEVGLPLELLGSQWLLCLFTTTFPSETVFRVFDCIFTEGSSFVFPAIMAHLRRLEPALLDLSEFHGVLSSIKDAENACIDGDSFMD 353
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BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A225X260_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X260_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.430e-20
Identity = 75/228 (32.89%), Postives = 111/228 (48.68%), Query Frame = 1 
Query:  475 NLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRT------NVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWK-GLSHISSTNGGVTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGV 1137
            +LR   +M LSGA+ K  V      Y  LV   +  E                 FR I+ D++RT       +     R+++RR+LRA++L+NPS GYCQG+N +  F +  AD  E++ FWLL      + PG++   +  I      + L+ L+ E LPQL E     GLP E+L   + L L     P  +V R+LD +F EG   +  V +A L   +  LLG+
Sbjct:  312 HLRERAYMNLSGASEKQ-VNAGTNYYADLVKKTETME--------------TETFRQIELDIDRTFGHSGTTISSQAGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFFMLMAD--EEVVFWLLSVFCEDLYPGYYSPAMGDIQRDM--LVLKQLIAEDLPQLDEFTAEVGLPLELLGSQWLLCLFTTTFPSETVFRILDCIFTEGSSFVFPVIMAHLRRLEPTLLGL 520
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: H3H2Z1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2Z1_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 3.570e-20
Identity = 72/227 (31.72%), Postives = 108/227 (47.58%), Query Frame = 1 
Query:  475 NLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRT------NVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGGVTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGV 1137
            +LR   +M LSGA+ K S       Y  LV   D  E                 FR I+ D++RT       +     R+++RR+LRA++L+NPS GYCQG+N +  FL+  AD  E+  FWLL      + PG++     +      + L+ L+ + LP+L E     GLP E+L   + L L     P  +V R+ D +F EG   +  V +  L   +  LLG+
Sbjct:  330 HLRERAYMNLSGASEKQS-NAGPNYYAGLVREADSTE--------------TETFRQIELDIDRTFGHSGTAICSQSGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMAD--EEAVFWLLSVFCEDLYPGYYSP-DMVDIQRDMLVLKWLIADELPRLDEFTSEVGLPLELLGSQWLLCLFTTTFPSETVFRIFDCIFIEGSSFVFPVIMTHLRRLEPTLLGL 538
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A329T1P5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1P5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.590e-20
Identity = 73/226 (32.30%), Postives = 110/226 (48.67%), Query Frame = 1 
Query:  475 NLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQGGQAAAYRKAAAVFRTIDGDVNRT------NVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWK-GLSHISSTNGGVTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELL 1131
            +LR   ++ LSGA+ K +       Y  LV   +  E                 FR I+ D++RT       +     R+++RR+LRA++L+NPS GYCQG+N +  FL+  AD  E++ FWLL      + PG++   +S I      + L+ L+ E LPQL E     GLP E+L   + L L     P  +V R+ D +F EG   +  V +A L   +  LL
Sbjct:  326 HLRERAYVNLSGASEKQA-NAGPNYYSDLVKKAETME--------------TETFRQIELDIDRTFGHSGTTICSESGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMAD--EEIVFWLLSVFCEDLYPGYYSPAMSDIQRDM--LVLKQLIAEELPQLDEFASEVGLPLELLGSQWLLCLFTTTFPSETVFRIFDCIFTEGSTFVFPVIMAHLRRMEPTLL 532
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A2P4Y3Y3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Y3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-19
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:  634 VFRTIDGDVNRT------NVRDSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWK-GLSHISSTNGGVTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGV 1137
             FR I+ D++RT       V     R+++RR+LRA++L+NPS GYCQG+N +  FL+  AD  E+  FW+L      + P ++   +  I      + L+ L+ E LPQL E     GLP E+L   + L L     P  +V R+LD +F EG   +  V +A L   +  LLG+
Sbjct:   18 TFRQIELDIDRTFGHSGTTVCSESGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMAD--EENVFWILSVFCEDLYPDYYSPAMGDIQRDM--LVLKQLIAEELPQLDEFTAEVGLPLELLGSQWLLCLFTTTFPSETVFRILDCIFTEGSSFVFPVIMAHLRRLEPALLGL 188
[Close]
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Match: A0A317XSC9_9BASI (TBC-domain-containing protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XSC9_9BASI)

HSP 1 Score: 102 bits (254), Expect = 1.330e-19
Identity = 72/198 (36.36%), Postives = 108/198 (54.55%), Query Frame = 1 
Query:  646 IDGDVNRT---NVR---DSDERERIRRVLRAFALKNPSTGYCQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGGVTLRI-LMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVLDILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDADSIIDLA 1218
            ID DV+RT   N+    D     ++RR+L AF+  NP+TGYCQGMN++A  LL T    E+  FW+L  +   ++P  +   SH+  +     + I L+ EH+PQL +HL+  G+    +   +FLSL    LP  ++ RV D++F EG   L  VA+A+L L + ELL    AA+        T+ +   D +I LA
Sbjct: 1548 IDLDVHRTMPTNIYFGGDGQGIPKLRRLLVAFSWYNPNTGYCQGMNNLAATLLLT-HATEEEAFWVLVCIIEKILPSEYY-TSHLLVSQADQRVLIELVQEHMPQLYDHLEDLGVDLPAITFAWFLSLYTDCLPVETLFRVWDVMFVEGMVILFRVAMAILKLHEKELLATTSAASFYGLAHSLTSRLFGVDKLIHLA 1743
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9073.16907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGQ8_ECTSI5.990e-18064.41RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JLI6_9PHAE2.510e-17565.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YP93_9STRA5.060e-3151.97Rab-GTPase-TBC domain-containing protein (Fragment... [more]
A0A7S2BGU4_9STRA1.630e-2537.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3F2RY14_9STRA3.430e-2131.75Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A225X260_9STRA1.430e-2032.89Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
H3H2Z1_PHYRM3.570e-2031.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A329T1P5_9STRA8.590e-2032.30Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4Y3Y3_9STRA1.250e-1935.43Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A317XSC9_9BASI1.330e-1936.36TBC-domain-containing protein n=1 Tax=Testicularia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9073contigH-paniculata_contig9073:1369..5891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score523.5
Seed ortholog evalue9.1e-146
Seed eggNOG ortholog2880.D7FGQ8
KEGG koko:K20165
Hectar predicted targeting categoryother localisation
EggNOG free text desc.activation of GTPase activity
EggNOG OGsCOG5210@1,KOG2058@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-04_001220.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons7
Model size1236
Cds size1236
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.7575567-CDS-H-paniculata_contig9073:1368..14851622931131.7575567-CDS-H-paniculata_contig9073:1368..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 1369..1485 -
1691481604.679621-CDS-H-paniculata_contig9073:1368..14851691481604.679621-CDS-H-paniculata_contig9073:1368..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 1369..1485 -
1622931131.775626-CDS-H-paniculata_contig9073:1800..20081622931131.775626-CDS-H-paniculata_contig9073:1800..2008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 1801..2008 -
1691481604.6938982-CDS-H-paniculata_contig9073:1800..20081691481604.6938982-CDS-H-paniculata_contig9073:1800..2008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 1801..2008 -
1622931131.7910585-CDS-H-paniculata_contig9073:2720..28751622931131.7910585-CDS-H-paniculata_contig9073:2720..2875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 2721..2875 -
1691481604.7044997-CDS-H-paniculata_contig9073:2720..28751691481604.7044997-CDS-H-paniculata_contig9073:2720..2875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 2721..2875 -
1622931131.8083475-CDS-H-paniculata_contig9073:4166..44001622931131.8083475-CDS-H-paniculata_contig9073:4166..4400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 4167..4400 -
1691481604.714886-CDS-H-paniculata_contig9073:4166..44001691481604.714886-CDS-H-paniculata_contig9073:4166..4400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 4167..4400 -
1622931131.8228838-CDS-H-paniculata_contig9073:4668..49591622931131.8228838-CDS-H-paniculata_contig9073:4668..4959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 4669..4959 -
1691481604.7281418-CDS-H-paniculata_contig9073:4668..49591691481604.7281418-CDS-H-paniculata_contig9073:4668..4959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 4669..4959 -
1622931131.8371441-CDS-H-paniculata_contig9073:5465..56211622931131.8371441-CDS-H-paniculata_contig9073:5465..5621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 5466..5621 -
1691481604.7400286-CDS-H-paniculata_contig9073:5465..56211691481604.7400286-CDS-H-paniculata_contig9073:5465..5621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 5466..5621 -
1622931131.8523152-CDS-H-paniculata_contig9073:5816..58911622931131.8523152-CDS-H-paniculata_contig9073:5816..5891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 5817..5891 -
1691481604.7535064-CDS-H-paniculata_contig9073:5816..58911691481604.7535064-CDS-H-paniculata_contig9073:5816..5891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 5817..5891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9073.16907.1prot_H-paniculata_contig9073.16907.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9073 1369..5891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9073.16907.1

>prot_H-paniculata_contig9073.16907.1 ID=prot_H-paniculata_contig9073.16907.1|Name=mRNA_H-paniculata_contig9073.16907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
IVASVTLFQVVRVTGRLCCAEYHVQVRREVSGDSWFVVRRYSDFRQLYDN
LPRPFAAITPPLPPKSWRSLSFLSMTPEFLEDRRVALEVALRRLAINAVR
ADSTVQADVRAFLGFPPCPGRGLLAGVDAEVARHLARVPPQLELSLPERG
PRPVSLLNNLRVTMWMLLSGAAYKSSVTEDREQYPALVSVGDEQEWCRQG
GQAAAYRKAAAVFRTIDGDVNRTNVRDSDERERIRRVLRAFALKNPSTGY
CQGMNSVALFLLRTADGREDLCFWLLDALGVTVMPGHWKGLSHISSTNGG
VTLRILMDEHLPQLLEHLDSRGLPPEILACDFFLSLGCRALPPLSVLRVL
DILFWEGGETLLYVALAVLHLAQDELLGVQGAAATSDCLAKCTTSMNDAD
SIIDLAEAAMEK
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mRNA from alignment at H-paniculata_contig9073:1369..5891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9073.16907.1 ID=mRNA_H-paniculata_contig9073.16907.1|Name=mRNA_H-paniculata_contig9073.16907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4523bp|location=Sequence derived from alignment at H-paniculata_contig9073:1369..5891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTTGCATCGGTCACTTTATTCCAGGTCGTTCGTGTTACTGGCCGTTT
ATGCTGCGCGGAGTACCACGTGCAGGTTAGTTTCTGGGTAGGAGAGTAGT
ACGTGTGCACAATTCGAGGTTCGTCGTGGTTTTTTCAGGACCTTACCCGG
CCGCTCAGCAGAAGTATATGGTGAAGAGGTGCTCCTTAGATGGCTCTCTG
ATGCTGTTTTGAGCCACAAATGCCATTTAATTTGTTATCATCGTGAAATT
GTGCTCATCTCTCTTTACAGGTGAGGCGGGAGGTATCAGGAGACAGCTGG
TTTGTAGTCCGGAGATACTCGGACTTTAGGCAATTGTACGATAATCTGCC
GAGGCCCTTCGCAGCAATCACACCACCGCTACCTCCCAAGAGCTGGCGAT
CTCTCTCGTTTCTGAGTATGACACCGGTAAGCAGGCTCACGAATGACATC
GATTTATGTAACCTCTCGCCAACATGAATCATGTTCCACAAGAAGAACGC
ATTCGCGAAGTGTATTCGGTCGATATCTTCCGTATTCCAGACGCATGATT
CACCTGTTACCTCGAAATGTGTTATGTTGGTCGCTTATAAGAGTTGCTAA
TGTTCGGACTAATTATCTTGTTTCAAAGACCCGGTGTTTGTCTTTCGCCC
TTCTCGCAGTACCCAGACGGAGTACTTCGGTGTGACAGAATGGTTATTTT
GTAGCCGCTCATTTGTTGTACAGATAACAATGGAATCGAACGTCTCGCGT
CCTTTTCTTTGTTCCTGCGGTGCCAGCGGTGGGGAAAGATCGTGGTACCC
TGGAGTTATCGCCTACCCGCAATGGGTGGGTTGTTGTGGCGGAGAACCTT
GCGCACACCAATTGTCGATATTGCTTGCGCTAGCTTTTGCGCAACTAATT
CTCGGCCCTTGATGTTGACATGGACTGATCAGGAGTTTCTCGAAGACCGA
CGAGTGGCTTTGGAAGTTGCTCTTCGAAGGCTGGCGATCAACGCCGTTCG
AGCGGACAGCACTGTCCAAGCCGACGTCAGAGCATTCTTGGGATTTCCTC
CTTGCCCTGGAAGAGGGCTCCTAGCAGGTGTCGACGCGGAGGTTGCGCGT
CACTTGGCTCGCGTTCCACCTCAACTTGAATTGTCTCTCCCGGAGCGAGG
TCCACGCCCGGTTTCTCTGCTTAACAACCTGCGAGTGACGATGTGGATGC
TGCTTTCTGGCGCAGCGTACAAGGTATATGATACCCAGAACCATGAGCGC
TTCTCTTGCCTCAGCACAATCTATTTTGCATCTTGGAGTGTTCTTAAGCG
TCAGAGATCGGAGCTCACGATATTTCGGTAATTTCGCGTCTTTTCCCTCA
GCATAGACCCTGGTTTCGATGCTTGCGAAAATCGGGGCGACCATACTTAC
AAGGCAGCGCTCTTTTTTTCGCATATCTTAACGAGCTGACAGTCATCCGT
TTTCGAATTGTACACGTCTCCAATTTCGACTCTTATGTCAGTCCTCCGTG
ACGGAGGATCGTGAACAATACCCCGCTCTAGTGAGTGTAGGCGATGAGCA
GGAGTGGTGTCGCCAAGGGGGGCAAGCTGCGGCCTACCGGAAGGCGGCAG
CCGTATTTCGGACAATCGACGGAGATGTCAACCGGACCAACGTGAGAGAT
AGCGACGAGCGGGAACGGATACGGCGTGTTCTGCGAGCATTTGCTCTCAA
GAACCCAAGCACGGGATACTGCCAGGTGCGGAGTCGATTGCATCTAGCTC
AGTATGTAATCCAATGGATTCGGCAAACCTGTGGCGGCGTACTCACTGAT
GGTCACTACACTTGGACGGTTATCGAATCTCGCATGGGTCATGGCTGGTA
GATTGTTCAACCTATATCTGTTGCGGTACGGTGTGCTTAGGCTTTTTCCC
TACATGCGATAAAAATCGATGAAATTATGCGCGTTTCTTCCACGTGCATA
CGTTCAAAAACCGGAAATATGCCCCCGTTTATGCGAATTTCTGAGAAATA
TGTACAAATACGCGACTAACGATGAAATAGGCGCCATGTACGCCCTATCC
ACATGTTTTCCTCAAATGAACGAGTTGCGAACGTCAAATAAATATGGATG
TGTGTGCGCACATGACATCCATTCGCATGTTGCAAGTCTCCATCATTCTA
GTATTTGTACTTTTGTACTACTAACACGCCTTTAGTCTTTCAATATATGC
AGGCTTGGACATGGCCATTTACAAACAGCCAAACATAATCAGAACAAAAT
GGCAGATTGGAGATTCGCTACTTTGCAACGAAAGCAGTGAAGAAGACCCA
GTTTGGAAGTGATGGAAGACATGTCCAATTTTCCAAAATGAAATTCACAC
ATTCCAATGGCTGAACACGTGAACAACGCCTTCCCTTCTCACTGATTCCC
TTATATTCTTTCAACTTCCGACGTTCGCCCTGCCTGTGTTGCGTAGTCCT
GTATTTAGTAGATTGAGATATTGGATTCGCTGCTCAGGTAGGTGTAATCC
ATATCCAGTTCACGCATAAACGCTTGGCTACTGACTGCTGATGAGCAGTG
TGCAGTGCCAACATTATCATACATGTCAATACTACAGGTTTACTGCTACC
GTCCACCCCATGGCTCATCTATAGCAATACCCATGCAGCCGCCCTGCGCG
CAATTGTGCTGATGTATTCAGCATGATATTTGTGGTTAATATACTGGTTG
GCAGCGCAACTGATAGGGCCTTATGACAACATGACAAGTCACATGAAAAG
AATTGATGAATGTCATACTCCAACGCACCAGCACCTTTAATGATGGACAT
AAATATGCGCAACAGCCTGAATTATGTGCGTGTCTAGTGCACAATGGGTC
AAAATATGTGCAACATGCGAGAATATGCGAAAAACACATGTGCGTGAAAA
AACAAATATATGCGCAAAATATAAAAAGCATATCGGGGAGAAAGAAGCCT
AGATGTGCTACCAACCATCTATCTTTATATACAACTAACTTGAGAATGAT
GCCTTCTTTTCTTCAGGGGATGAATTCGGTCGCGTTATTTCTCTTGAGAA
CAGCCGATGGACGCGAGGACCTGTGCTTTTGGCTTCTTGATGCCCTGGGC
GTCACAGTTATGCCTGGTCATTGGAAAGGCCTTTCACACATTTCCTCTAC
GAATGGAGGGGTAACTCTCAGGTGAGAATACATTTTTTGTGTACCCGGAG
CTCAAGCTACATAGGTTGGCATATGCTTTGCGGTACATCCACGTTATCCA
GGTCAAACTCTTTTGCACCGCGGATTCTAATTTAACGAAAAAAAATGTCG
TTCAACTGGGAATTCACGCTAGACCCAGAATTCGAGGCGTGCATTCTAAG
ATGACCCTCCTTCACTAATGAAATAATGTAACCTGGTGTGTCAAATTTTA
CGTGTTGCAGGTAGTTGATCAAATTTGGTGTATACTTTCTCGTGTCATCT
CTCAGGTGTTCAGGGGCATGGTAGCTCGCCGGCAACAGGCTAATACAGCG
GATAACACCCATCCTCGTATTTTTGCGTCATAATTTTCTGTCTCGTTTCG
AAGTTTTTGCTCTCGAACATTTTGTGCTGGAACCAAAAATCCAACTACGT
AAAATGCAGTCCATGTACTCCTATCTAATCTCCATTAGGTTTGTGACTCT
TCACAAGTTTTGGAATGTATTTAGCCGGAAAAAAAAAAGCTTGGCGTGGA
TGACTGCATATACCTTGAAATCATCTTGACCTCGTAGAAAACTTTGCTGT
ACGTGAGATGTAATTGTGGATTATAAAAAGAAGATGCTTACGCATTCGTG
TGTGCGACTCTTTTGTGGATGTTCGCGTAGTTTGGCGCCCTTGCTCATGA
GCGTTGCTGTTCTACTTTCCCCCTTTGATTCAGGATTCTAATGGACGAGC
ATTTGCCGCAGCTGTTGGAACACCTTGACTCGCGTGGGCTTCCGCCAGAG
ATCTTGGCGTGTGATTTTTTCTTGTCGCTGGGATGTCGAGCTTTACCACC
TTTGTCGGTCCTACGGGTGTTGGACATACTGTTTTGGGAAGGAGGGGAAA
CCCTCCTCTACGTAGCGCTGGCTGTCCTGCATCTTGCACAGGTAAGAGAT
GATATCTCCGCATTACGCATTTTACGTCGTAGCGGCGCTCACGGTTTCGT
GTCTGTCGCTCGATCCATTGCTCCATTAGCTGCAGCTATAGAGAACACGC
TGTGAACAGGGTGTACGATAAGAGTGGACTGCCAGCAGGTGTCTCCCTTC
ACGTATTACGACGCCAGTCGTCTGCGCTCTTCATGTCGAAACAGGAAATG
TATACGGTGCCCAAGATGAAGCGCATGGACCACTTTACATGAAAAATGTG
CCCATGTGTTGAAGAAAGTTGAACACGTCGCTTATACGCTGTCTCACCCG
CCTCAGGATGAGCTTCTAGGAGTACAGGGTGCTGCCGCTACATCTGACTG
CCTCGCCAAGTGCACAACTTCCATGAATGACGCTGATAGTATAATCGACT
TGGCGGAAGCAGCAATGGAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9073:1369..5891-

>mRNA_H-paniculata_contig9073.16907.1 ID=mRNA_H-paniculata_contig9073.16907.1|Name=mRNA_H-paniculata_contig9073.16907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig9073:1369..5891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTTGCATCGGTCACTTTATTCCAGGTCGTTCGTGTTACTGGCCGTTT
ATGCTGCGCGGAGTACCACGTGCAGATTGTTGCATCGGTCACTTTATTCC
AGGTCGTTCGTGTTACTGGCCGTTTATGCTGCGCGGAGTACCACGTGCAG
GTGAGGCGGGAGGTATCAGGAGACAGCTGGTTTGTAGTCCGGAGATACTC
GGACTTTAGGCAATTGTACGATAATCTGCCGAGGCCCTTCGCAGCAATCA
CACCACCGCTACCTCCCAAGAGCTGGCGATCTCTCTCGTTTCTGAGTATG
ACACCGGTGAGGCGGGAGGTATCAGGAGACAGCTGGTTTGTAGTCCGGAG
ATACTCGGACTTTAGGCAATTGTACGATAATCTGCCGAGGCCCTTCGCAG
CAATCACACCACCGCTACCTCCCAAGAGCTGGCGATCTCTCTCGTTTCTG
AGTATGACACCGGAGTTTCTCGAAGACCGACGAGTGGCTTTGGAAGTTGC
TCTTCGAAGGCTGGCGATCAACGCCGTTCGAGCGGACAGCACTGTCCAAG
CCGACGTCAGAGCATTCTTGGGATTTCCTCCTTGCCCTGGAAGAGGGCTC
CTAGCAGGTGTCGACGCGGAGGTTGCGCGTCACTTGGCTCGCGTTCCACC
TCAACTTGAATTGTCTCTCCCGGAGCGAGGTCCACGCCCGGTTTCTCTGC
TTAACAACCTGCGAGTGACGATGTGGATGCTGCTTTCTGGCGCAGCGTAC
AAGGAGTTTCTCGAAGACCGACGAGTGGCTTTGGAAGTTGCTCTTCGAAG
GCTGGCGATCAACGCCGTTCGAGCGGACAGCACTGTCCAAGCCGACGTCA
GAGCATTCTTGGGATTTCCTCCTTGCCCTGGAAGAGGGCTCCTAGCAGGT
GTCGACGCGGAGGTTGCGCGTCACTTGGCTCGCGTTCCACCTCAACTTGA
ATTGTCTCTCCCGGAGCGAGGTCCACGCCCGGTTTCTCTGCTTAACAACC
TGCGAGTGACGATGTGGATGCTGCTTTCTGGCGCAGCGTACAAGTCCTCC
GTGACGGAGGATCGTGAACAATACCCCGCTCTAGTGAGTGTAGGCGATGA
GCAGGAGTGGTGTCGCCAAGGGGGGCAAGCTGCGGCCTACCGGAAGGCGG
CAGCCGTATTTCGGACAATCGACGGAGATGTCAACCGGACCAACGTGAGA
GATAGCGACGAGCGGGAACGGATACGGCGTGTTCTGCGAGCATTTGCTCT
CAAGAACCCAAGCACGGGATACTGCCAGTCCTCCGTGACGGAGGATCGTG
AACAATACCCCGCTCTAGTGAGTGTAGGCGATGAGCAGGAGTGGTGTCGC
CAAGGGGGGCAAGCTGCGGCCTACCGGAAGGCGGCAGCCGTATTTCGGAC
AATCGACGGAGATGTCAACCGGACCAACGTGAGAGATAGCGACGAGCGGG
AACGGATACGGCGTGTTCTGCGAGCATTTGCTCTCAAGAACCCAAGCACG
GGATACTGCCAGGGGATGAATTCGGTCGCGTTATTTCTCTTGAGAACAGC
CGATGGACGCGAGGACCTGTGCTTTTGGCTTCTTGATGCCCTGGGCGTCA
CAGTTATGCCTGGTCATTGGAAAGGCCTTTCACACATTTCCTCTACGAAT
GGAGGGGTAACTCTCAGGGGATGAATTCGGTCGCGTTATTTCTCTTGAGA
ACAGCCGATGGACGCGAGGACCTGTGCTTTTGGCTTCTTGATGCCCTGGG
CGTCACAGTTATGCCTGGTCATTGGAAAGGCCTTTCACACATTTCCTCTA
CGAATGGAGGGGTAACTCTCAGGATTCTAATGGACGAGCATTTGCCGCAG
CTGTTGGAACACCTTGACTCGCGTGGGCTTCCGCCAGAGATCTTGGCGTG
TGATTTTTTCTTGTCGCTGGGATGTCGAGCTTTACCACCTTTGTCGGTCC
TACGGGTGTTGGACATACTGTTTTGGGAAGGAGGGGAAACCCTCCTCTAC
GTAGCGCTGGCTGTCCTGCATCTTGCACAGGATTCTAATGGACGAGCATT
TGCCGCAGCTGTTGGAACACCTTGACTCGCGTGGGCTTCCGCCAGAGATC
TTGGCGTGTGATTTTTTCTTGTCGCTGGGATGTCGAGCTTTACCACCTTT
GTCGGTCCTACGGGTGTTGGACATACTGTTTTGGGAAGGAGGGGAAACCC
TCCTCTACGTAGCGCTGGCTGTCCTGCATCTTGCACAGGATGAGCTTCTA
GGAGTACAGGGTGCTGCCGCTACATCTGACTGCCTCGCCAAGTGCACAAC
TTCCATGAATGACGCTGATAGTATAATCGACTTGGCGGAAGCAGCAATGG
AGAAAGATGAGCTTCTAGGAGTACAGGGTGCTGCCGCTACATCTGACTGC
CTCGCCAAGTGCACAACTTCCATGAATGACGCTGATAGTATAATCGACTT
GGCGGAAGCAGCAATGGAGAAA
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