mRNA_H-paniculata_contig9068.16901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9068.16901.1
Unique NamemRNA_H-paniculata_contig9068.16901.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 3.670e-83
Identity = 179/301 (59.47%), Postives = 204/301 (67.77%), Query Frame = 1
Query:    1 TGYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANIS------------CGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQCSAATTDPQV 867
            TGY CP+GTYCPAGSS P GC PGTYNPS+AME C +           T P EXX   XXXXXXXXXXXXXXXXXX             CP G+YC+DG +TSTCRAGYFCKTG  +PTPN  +AN++             GP           EDP QC NA+VRA L+GVS+D XXXXXXXXXXXXXXXXXXXXYRGYYCP+G DPIPCPI TYN  +EQDD++DC +CPAGYYC+ EGIGD++QYP       L RE +P +CPAG YRN TGA S +DC  CPGGFQC   +  P V
Sbjct: 2953 TGYPCPRGTYCPAGSSFPHGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVAESECSPCPPGHYCLDGNVTSTCRAGYFCKTGIGNPTPNSEYANVTYEAYNEIWEALDAGPCPAGHYCPPGTEDPVQCANASVRASLLGVSADXXXXXXXXXXXXXXXXXXXXXYRGYYCPQGEDPIPCPIGTYNPLMEQDDRDDCNSCPAGYYCFSEGIGDHAQYPCPAGSFCLVRETDPEQCPAGTYRNTTGAASVEDCPLCPGGFQCHEGSVTPDV 3253          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: UPI00109BA52F (uncharacterized protein LOC110234175 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA52F)

HSP 1 Score: 129 bits (323), Expect = 6.220e-29
Identity = 102/288 (35.42%), Postives = 132/288 (45.83%), Query Frame = 1
Query:    4 GYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSS-DDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQCSAATTD 858
            GY CP+   CP GS   + C PG+  P + M  CT              P +   F+                               + C  G+YC  G I  TC  GYFCK+G+  P PN + + +  GP    X XXX    P  C + T++    G  + +D   XXXXXXXXXXXXXXXXX  G+YC  G DP  CP+  Y +     +  DCF CPAGY+C + G+ +YS          L  + +P  CPAGR R  TGA +  DC  CPGG  C    T+
Sbjct: 4158 GYVCPKEHKCPKGSPNYIKCEPGSNQPREGMATCTPCKAGYYCTPN---PTDCPAFNYCPAGVTTPIPCPNGTFTYENLTRLANASQCLPCIRGHYCRLGQIIGTCAGGYFCKSGSPDPNPNGHVSPVVAGPCPMGXFXXXGTLAPVPCPDRTMKNYTGGAGTVNDCTTXXXXXXXXXXXXXXXXXXPGHYCETGSDPTKCPLLRYRDKSGGKNLGDCFECPAGYWCNVTGMNNYSNSECPLGHYCLQAQ-KPTLCPAGRRREITGAKNVTDCGPCPGGXYCPXNMTN 4441          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: UPI0009E3911A (uncharacterized protein LOC110042058 isoform X3 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3911A)

HSP 1 Score: 127 bits (320), Expect = 1.570e-28
Identity = 110/281 (39.15%), Postives = 139/281 (49.47%), Query Frame = 1
Query:    7 YECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA--CPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCGPXXXXXXXXXXXE-DPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQC 840
            ++CP G +CP G++ P  C PGTY   +   +C +XXXXXXXXXXX+ P  X    X          XXXXX                 C  G+YC  G +   C AGY C T + +PTP+   +N++ G              +P +CE   V       S  +    XXXXXXXXXXXXXXXX  G+YCP      PCP+ TYN      D   C  CPAGY+C+ EG+ DY+  P       L   D P+ CP G YRN+TGA +  DC  CP G  C
Sbjct: 5174 FQCPMGHFCPDGTANPFSCRPGTYQSREQQVSCDDXXXXXXXXXXXSDPLAXPPHXXCPNGTHTPVVXXXXXFTYTNETGLSNVDQCRPCSPGHYCQRGVVADNCSAGYLCYTASPTPTPDG--SNVTIGRECPVGYYCPAGTLEPLKCEAGLVIPYTRARSKVECQICXXXXXXXXXXXXXXXXTVGHYCPFNDTVRPCPLRTYNNVSGATDISFCEPCPAGYHCWYEGLADYTTSPCPVGQYCLNATDNPIPCPNGTYRNDTGARNISDCYLCPAGNFC 5452          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: A0A3M6V4Z0_POCDA (TNFR-Cys domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V4Z0_POCDA)

HSP 1 Score: 117 bits (293), Expect = 5.280e-25
Identity = 109/281 (38.79%), Postives = 135/281 (48.04%), Query Frame = 1
Query:    7 YECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCT--EXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCG-PXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQC 840
            + CP G YCP G++ P+GC PG+Y   +  E+C    XXXXXXXXXXX          XXXXXXXXXXXXXXX                C AG++C  G IT  C AGY C  G  +PTP+   +N S G P            +   CE   V       S                         G+YCP      PCP+ T+N      D   C  CPAGYYC+ EG+ DY+   XXXXXXXL   D+P+ CP G +R++TGA +  +C  CP G  C
Sbjct: 4921 FLCPIGHYCPKGTANPVGCKPGSYQSRQQQESCDVXXXXXXXXXXXXXXXAXPPHXXXXXXXXXXXXXXXXXXTKDQETGLSSPDQCRPCVAGHFCQLGVITDNCTAGYLCYIGNPTPTPDG--SNASIGEPCPIGFYCPSGTLEKLACEPGLVITKKGAKSKAACQVCPAGKICVSGSSIPTDCTVGHYCPFNDTARPCPLRTFNSVSGATDISFCHPCPAGYYCWYEGLSDYTTSXXXXXXXXLNATDQPIPCPNGTFRSSTGARNISECHLCPAGRYC 5199          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: UPI000F553687 (uncharacterized protein LOC113686306 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F553687)

HSP 1 Score: 117 bits (293), Expect = 5.280e-25
Identity = 109/281 (38.79%), Postives = 135/281 (48.04%), Query Frame = 1
Query:    7 YECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCT--EXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCG-PXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQC 840
            + CP G YCP G++ P+GC PG+Y   +  E+C    XXXXXXXXXXX          XXXXXXXXXXXXXXX                C AG++C  G IT  C AGY C  G  +PTP+   +N S G P            +   CE   V       S                         G+YCP      PCP+ T+N      D   C  CPAGYYC+ EG+ DY+   XXXXXXXL   D+P+ CP G +R++TGA +  +C  CP G  C
Sbjct: 5037 FLCPIGHYCPKGTANPVGCKPGSYQSRQQQESCDVXXXXXXXXXXXXXXXAXPPHXXXXXXXXXXXXXXXXXXTKDQETGLSSPDQCRPCVAGHFCQLGVITDNCTAGYLCYIGNPTPTPDG--SNASIGEPCPIGFYCPSGTLEKLACEPGLVITKKGAKSKAACQVCPAGKICVSGSSIPTDCTVGHYCPFNDTARPCPLRTFNSVSGATDISFCHPCPAGYYCWYEGLSDYTTSXXXXXXXXLNATDQPIPCPNGTFRSSTGARNISECHLCPAGRYC 5315          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: A0A2B4SBR6_STYPI (CAP-Gly domain-containing linker protein 1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SBR6_STYPI)

HSP 1 Score: 115 bits (287), Expect = 3.190e-24
Identity = 126/281 (44.84%), Postives = 150/281 (53.38%), Query Frame = 1
Query:    7 YECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA--CPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCGPXXXXXXXXXXXEDPTQ-CENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQC 840
            + CP G +CP G++ P  C PGTY   K   +C  XXXXXXX    + P  X    XXXXXXXXXXXXXXXXX                C AG++C  G IT  C AGY C  G  +PTP+   +N S G                Q CE   V       S  +  XXXXXXXXXXXXXXXXXX   YYCP      PCP+ T+N      D   C  CPAGYYC+ EG+ DY+   XXXXXXXL   D+P+ CP G +R++TGA +  +C  CP G  C
Sbjct: 5119 FLCPIGHFCPKGTANPFSCAPGTYQSRKQQVSCDIXXXXXXXLANTSDPIAXPPHXXXXXXXXXXXXXXXXXXTNDQETGLSNVDQCRPCVAGHFCQLGVITDNCTAGYLCYIGNPTPTPDG--SNSSIGEICPIGYYCPAGTLKRQRCEPGLVIPYKGARSKAECQXXXXXXXXXXXXXXXXXXXXXYYCPFNDTARPCPLQTFNNVSGATDISFCHPCPAGYYCWYEGLSDYATSXXXXXXXXLNATDQPIPCPNGTFRDSTGARNISECHLCPAGRYC 5397          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: UPI001390131C (uncharacterized protein LOC5510971 isoform X1 n=8 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390131C)

HSP 1 Score: 109 bits (273), Expect = 2.100e-22
Identity = 101/280 (36.07%), Postives = 131/280 (46.79%), Query Frame = 1
Query:    4 GYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSS-DDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQC 840
            GY CP+   CP GS+ P+ C PG YN  +  +   +                XX   XXXXXXXXXX                   + C  G YC  G IT  C      K+G+  P P+ Y+  +  GP           + P  C + T++    G  + DD  XXXXXXXXXXXXXXXXXX  G+YC     P PCPI+ Y +    +D +DCF CPAGY+C + G+ +Y+          L+ +  P  C AG  R   GA +  DC  CPGG  C
Sbjct: 6234 GYLCPKEHKCPLGSAMPVRCEPG-YNQKREGQPTCDPCPAGYYCDPDAKKXXXXXXXXXXXXXXXXXPNGTFTYDNMTGLANSSQCLPCVRGYYCRLGEITEQCMGXXXXKSGSPDPNPDGYWPPVEAGPCKMGHYCPKGTQAPLPCPDNTMKNYTGGAGTVDDCTXXXXXXXXXXXXXXXXXXXPGHYCKLRSYPTPCPIHRYRDIPGGEDLDDCFKCPAGYWCNVTGMNNYNNSACPLGHYCLSAQ-VPQLCEAGTRRKVVGARNQSDCSPCPGGQYC 6511          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: J9I3X3_9SPIT (Cast domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I3X3_9SPIT)

HSP 1 Score: 109 bits (272), Expect = 2.760e-22
Identity = 66/203 (32.51%), Postives = 81/203 (39.90%), Query Frame = 1
Query:  262 VACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYF--ANISCGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGL-DPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCLQCPGGFQCSAATTDP 861
            V C  G YC  G  T  C AGYFC++G  SPTP      AN  C                 +C     R     +   D                     +G+YCP G    IPCPI T+++        +C  CP+GY C    I DYS+YP        +R      CPAG YR  TGA    DC  CP G+ C   TT+P
Sbjct: 2612 VNCDIGRYCRGGVDTGICTAGYFCQSGESSPTPPLLMCSANKYC---------PHGATREAKCPTGYYRPTKGAIQVTDCVECSAGYICINNQVPYECP-KGFYCPYGTTSEIPCPIGTWSQSTSLIAANECQNCPSGYLCNKTNITDYSKYPCPKGRYCPSRAQRAFSCPAGTYRQTTGARMEADCSTCPPGYYCPEGTTNP 2804          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: A0A8B6HFK7_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HFK7_MYTGA)

HSP 1 Score: 106 bits (265), Expect = 2.200e-21
Identity = 105/265 (39.62%), Postives = 122/265 (46.04%), Query Frame = 1
Query:    1 TGYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA--CPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANISCGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGL-DPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNN 786
            +GY+CP       G++ P+ CPPG Y P+     C +XXXXXXX    + P  X  F XXXXXXXXXXXXXXXXX                CPAG YC  G IT  C AGYFC      P P+          XXXXXXXX    D   C      A+    SS D                    Y GYYCP G+ +P+PCP+ TYN+  E DD   C  CP+GY C   GI DY+ YP                CP G Y  N
Sbjct:  684 SGYQCPXXXXXXQGTANPIACPPGKYQPNYGSIECIDXXXXXXXMLNSSDPEPXSXFSXXXXXXXXXXXXXXXXXTDNSTTGLERADDCPYCPAGKYCTGGQITGPCAAGYFCLANMTIPNPDNSLRPXXXX-XXXXXXXXEGTPDKLTCPAGKFIAIEGANSSADCNECPGGRVCAHNSTLSEPCYSGYYCPFGVANPVPCPVETYNDLQEADDLAWCKLCPSGYRCNETGIADYTIYP----------------CPVGTYCPN 931          
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Match: UPI001E1D7692 (LOW QUALITY PROTEIN: uncharacterized protein LOC123538081 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7692)

HSP 1 Score: 104 bits (260), Expect = 1.020e-20
Identity = 133/275 (48.36%), Postives = 158/275 (57.45%), Query Frame = 1
Query:    1 TGYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTEXXXXXXXXXXXTAPAEXXIFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VACPAGNYCIDGTITSTCRAGYFCKTGADSPTPNRYFANI-SCGPXXXXXXXXXXXEDPTQCENATVRAVLMGVSSDDXXXXXXXXXXXXXXXXXXXXYRGYYCPEGLDPIPCPINTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPXXXXXXXLTREDEPVECPAGRYRNNTGATSADDCL 816
            T Y CP G YCPA S+ P+GC PGTY PS+    C  XXXXXXXXXX + P +X  + XXXXXXXXXXXXXXXXX                C AG+YC  G I+  C AG+ C  G   P P+   +N+ + G XXXXXXXXXX   P  C   +  +    VS  +  XXXXXXXXXXXXXXXXXX+ G++C    DP  CP  TYN+     D   C  CPAGY+C    + +Y+   XXXXXXX      P  CPAG YR+   A S  DC 
Sbjct: 6735 TAYICPTGFYCPAESADPIGCTPGTYQPSQGEITCXXXXXXXXXXXXTSIPVDXPAYSXXXXXXXXXXXXXXXXXTADTKLNNEKPEDCADCVAGSYCTGGNISGPCSAGFICYVGMGVPDPDS--SNMPNGGXXXXXXXXXXXITTPQVCPANSFISKTGAVSQAECQXXXXXXXXXXXXXXXXXXWAGWFCRVNEDPEMCPNGTYNDQTGMSDSSACLPCPAGYFCDTPALSNYTVNXXXXXXXXPNATIVPESCPAGTYRDILAAESEPDCF 7007          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9068.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR26_ECTSI3.670e-8359.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00109BA52F6.220e-2935.42uncharacterized protein LOC110234175 n=1 Tax=Exaip... [more]
UPI0009E3911A1.570e-2839.15uncharacterized protein LOC110042058 isoform X3 n=... [more]
A0A3M6V4Z0_POCDA5.280e-2538.79TNFR-Cys domain-containing protein n=1 Tax=Pocillo... [more]
UPI000F5536875.280e-2538.79uncharacterized protein LOC113686306 n=1 Tax=Pocil... [more]
A0A2B4SBR6_STYPI3.190e-2444.84CAP-Gly domain-containing linker protein 1 n=2 Tax... [more]
UPI001390131C2.100e-2236.07uncharacterized protein LOC5510971 isoform X1 n=8 ... [more]
J9I3X3_9SPIT2.760e-2232.51Cast domain containing protein n=1 Tax=Oxytricha t... [more]
A0A8B6HFK7_MYTGA2.200e-2139.62Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
UPI001E1D76921.020e-2048.36LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9068contigH-paniculata_contig9068:4701..7265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue1.6e-74
Seed eggNOG ortholog2880.D8LR26
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons7
Model size1071
Cds size1071
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.0330765-CDS-H-paniculata_contig9068:4700..49071622931131.0330765-CDS-H-paniculata_contig9068:4700..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 4701..4907 -
1691481604.3628347-CDS-H-paniculata_contig9068:4700..49071691481604.3628347-CDS-H-paniculata_contig9068:4700..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 4701..4907 -
1622931131.0503705-CDS-H-paniculata_contig9068:5279..54591622931131.0503705-CDS-H-paniculata_contig9068:5279..5459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5280..5459 -
1691481604.374407-CDS-H-paniculata_contig9068:5279..54591691481604.374407-CDS-H-paniculata_contig9068:5279..5459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5280..5459 -
1622931131.0656703-CDS-H-paniculata_contig9068:5749..58571622931131.0656703-CDS-H-paniculata_contig9068:5749..5857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5750..5857 -
1691481604.3829858-CDS-H-paniculata_contig9068:5749..58571691481604.3829858-CDS-H-paniculata_contig9068:5749..5857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5750..5857 -
1622931131.0829182-CDS-H-paniculata_contig9068:5998..61131622931131.0829182-CDS-H-paniculata_contig9068:5998..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5999..6113 -
1691481604.3918037-CDS-H-paniculata_contig9068:5998..61131691481604.3918037-CDS-H-paniculata_contig9068:5998..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 5999..6113 -
1622931131.1008487-CDS-H-paniculata_contig9068:6367..64421622931131.1008487-CDS-H-paniculata_contig9068:6367..6442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 6368..6442 -
1691481604.40608-CDS-H-paniculata_contig9068:6367..64421691481604.40608-CDS-H-paniculata_contig9068:6367..6442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 6368..6442 -
1622931131.116155-CDS-H-paniculata_contig9068:6633..67851622931131.116155-CDS-H-paniculata_contig9068:6633..6785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 6634..6785 -
1691481604.4194953-CDS-H-paniculata_contig9068:6633..67851691481604.4194953-CDS-H-paniculata_contig9068:6633..6785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 6634..6785 -
1622931131.131847-CDS-H-paniculata_contig9068:7031..72651622931131.131847-CDS-H-paniculata_contig9068:7031..7265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 7032..7265 -
1691481604.429837-CDS-H-paniculata_contig9068:7031..72651691481604.429837-CDS-H-paniculata_contig9068:7031..7265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9068 7032..7265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9068.16901.1prot_H-paniculata_contig9068.16901.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9068 4701..7265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9068.16901.1

>prot_H-paniculata_contig9068.16901.1 ID=prot_H-paniculata_contig9068.16901.1|Name=mRNA_H-paniculata_contig9068.16901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=357bp
TGYECPQGTYCPAGSSAPLGCPPGTYNPSKAMENCTECPPGSVCMANATA
PAECPIFHYCPAGSSEGTPCPSGTYGNRTDLRSETECVACPAGNYCIDGT
ITSTCRAGYFCKTGADSPTPNRYFANISCGPCPAGHYCPAGTEDPTQCEN
ATVRAVLMGVSSDDCGVCPPGYVCFPGQTVPEQCYRGYYCPEGLDPIPCP
INTYNEFVEQDDQEDCFACPAGYYCYIEGIGDYSQYPCPAGHYCLTREDE
PVECPAGRYRNNTGATSADDCLQCPGGFQCSAATTDPQVCPSKTYCPTGA
SNATTCTAGFYCPVETAEPIICPGGYYCPLGSSEPILCVLGTFCPEGAEI
YTSCPLG
back to top

mRNA from alignment at H-paniculata_contig9068:4701..7265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9068.16901.1 ID=mRNA_H-paniculata_contig9068.16901.1|Name=mRNA_H-paniculata_contig9068.16901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2565bp|location=Sequence derived from alignment at H-paniculata_contig9068:4701..7265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGATACGAGTGTCCGCAGGGAACGTACTGCCCGGCAGGTTCATCCGC CCCTCTCGGATGCCCTCCTGGCACTTACAACCCTTCCAAGGCGATGGAAA ACTGTACAGAGTGCCCACCAGGATCAGTATGCATGGCGAACGCTACCGCT CCGGCGGAATGCCCTATTTTCCATTATTGCCCCGCGGGATCTTCCGAGGG TACCCCGTGCCCATCGGGTACCTACGGCAATAGGGTGAGTGGGAAATGGC GAACACTATTGGATCTTCATGGATTTTCGTTGTGGCCGGAGGACGTTCCG TAGATAGGCATGCCGCAAATACTGCGTCCAATACCAGAGCGAGAACACCT TTCAATTGCTCGGTAAAATGTCTCTTACGCTGGGGACCGCTCCTATGCTC GTTTACTTTACCTTGGCGATAGTGTCCTGCTGGAATTAAATTCTCCGAAC TTACGTTGGATTCGTGTGCTGCTGATACAGACGGATCTCCGCTCGGAGAC AGAGTGTGTGGCCTGCCCGGCCGGTAACTATTGCATCGACGGCACTATCA CGTCGACCTGCAGGGCAGGGTACTTCTGTAAGACCGGTGCCGATAGTCCC ACACCCAACAGGTACTTCGCCAATATATCATGGTTGTTAGAGGTGTTCGA ATACAAGCTGCTCATGAAACATACGTTGAAGGTTGCTCTTGACCATCTCC CTTGCGGTGCATCTGCTGTCACCCTCGCCCTCTCCGCAACCCCAATCCGG TTTAACTATGTGTCAGTGAGTACTCGAACTACTCGTACGTCTTATACGAC GAGGTATGGGAGGTCTTCGATAGTGGACCCTGTCCAGCCGGGCATTATTG TCCAGCAGGGACTGAGGATCCCACGCAGTGTGAGAACGCCACTGTTAGGT AAGACATTTTTCCTGATACGGACGCTCCTGTATCTGCATGAGATATTACG TGGTAAACGATGGAGTTCTGTGTAGTTAGCAAAAGGAGACTTAATTGCCG TGAGTTGGACATATGATAGTCACGTCGATATTTGCGGCTGCTCGTCTGAG CGGTGTTGACGTATTCCAGTCCAAAAGTGATTGATTAGTATTGTACGCAA CTGCCTGATATTCGTGCACCCATGATCTCCGTTGCTTAAAAATATTCTTC AGAGCCGTTCTCATGGGTGTCTCTTCGGATGATTGTGGAGTCTGCCCACC GGGATACGTTTGCTTCCCGGGCCAGACCGTGCCCGAACAGTGTTACAGGG GTTACTACTGTCCTGAGGTACACAAACCCGCTTATGGTTAATCGGTATAA CACTCTAGGGTTAAATGGTATCATACAAATGATGGTGACCGCACACTTGT TAAGTTTGCTCTCGCATGTCATGACTTCCACTGACGCCTCATATGTTTAC GAGTGCAGGGCTTGGACCCTATTCCCTGTCCGATCAACACCTACAACGAG TTCGTTGAGCAAGATGACCAGGAAGATTGCTTTGCTTGTCCGGCGGGGTA CTACTGCTACATTGAGGTGTGAAGCAATCCCAGACGAGTGGAGCGATGGG GTTAGGGTTCCGGCGTCGTTGAGCTCCTTTTTCCTGAGACTCCCAATGAG GGTCGCGTACCATACGTCAGATCATAACACATAATCATACGTTGGGAAAG GAAGCTCTTGCCCATCAGAATTTGGTGCAAAAGAAAAAGGATGTGTGTAC ATATATATATATATATATATATATATATACATTTCGGGGTCAATTGGGTG CATCGCTTTTGTCCGGGTCCGCGCCGTTTTCCTGTCGTTTGTTCTTGCAA CACCAGGGAATTGGCGATTATAGCCAATACCCTTGCCCAGCCGGACACTA CTGCCTGACGCGGGAGGACGAACCAGTAGAATGCCCTGCCGGGAGATACC GAAACAACACCGGTGCAACCTCTGCGGACGACTGCCTCCAGTGCCCCGGC GGATTTCAATGCTCTGCTGCGACTACTGATCCTCAGGTGAGAATTCATCA CACCCGTCAGCTCTACATGATTATCTCGGAAAATCAATCATGTGGGAGGT TGTATGAACAAAAAACAGGCAACATCTACACCCCCTTTCCCGTGAACTGT GGTATTGAACACACACGAAAACTAGCACCGGCTCCGCTCGCAAGAACGCG GAATATCCTGTCGCAAGTGGAGACACGAGTGCGCCAACTTATGGTGAATG CGTTGCACGGCGAGAAAAGTTCAAGATCATGAAATCATTGCTCCCCGACT CTTAATTACGACGGAGTTTATCTTCTGTACTGAAGCATTTTCAGCGAACA CAGTTCGCCAACCACGGTGACGCATCCTACCGTACCCTATTCGCGTACAT TGAATAAGGTCTGCCCCAGCAAAACCTACTGCCCGACTGGGGCATCGAAT GCGACCACCTGCACGGCGGGTTTTTACTGTCCGGTGGAGACGGCCGAACC TATCATCTGCCCAGGTGGATACTACTGTCCTCTAGGCAGTTCTGAGCCGA TACTTTGTGTCCTCGGAACGTTCTGCCCTGAGGGCGCGGAAATCTATACG TCGTGCCCATTGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9068:4701..7265-

>mRNA_H-paniculata_contig9068.16901.1 ID=mRNA_H-paniculata_contig9068.16901.1|Name=mRNA_H-paniculata_contig9068.16901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at H-paniculata_contig9068:4701..7265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGATACGAGTGTCCGCAGGGAACGTACTGCCCGGCAGGTTCATCCGC
CCCTCTCGGATGCCCTCCTGGCACTTACAACCCTTCCAAGGCGATGGAAA
ACTGTACAGAGTGCCCACCAGGATCAGTATGCATGGCGAACGCTACCGCT
CCGGCGGAATGCCCTATTTTCCATTATTGCCCCGCGGGATCTTCCGAGGG
TACCCCGTGCCCATCGGGTACCTACGGCAATAGGACGGGATACGAGTGTC
CGCAGGGAACGTACTGCCCGGCAGGTTCATCCGCCCCTCTCGGATGCCCT
CCTGGCACTTACAACCCTTCCAAGGCGATGGAAAACTGTACAGAGTGCCC
ACCAGGATCAGTATGCATGGCGAACGCTACCGCTCCGGCGGAATGCCCTA
TTTTCCATTATTGCCCCGCGGGATCTTCCGAGGGTACCCCGTGCCCATCG
GGTACCTACGGCAATAGGACGGATCTCCGCTCGGAGACAGAGTGTGTGGC
CTGCCCGGCCGGTAACTATTGCATCGACGGCACTATCACGTCGACCTGCA
GGGCAGGGTACTTCTGTAAGACCGGTGCCGATAGTCCCACACCCAACAGG
TACTTCGCCAATATATCATGACGGATCTCCGCTCGGAGACAGAGTGTGTG
GCCTGCCCGGCCGGTAACTATTGCATCGACGGCACTATCACGTCGACCTG
CAGGGCAGGGTACTTCTGTAAGACCGGTGCCGATAGTCCCACACCCAACA
GGTACTTCGCCAATATATCATGTGGACCCTGTCCAGCCGGGCATTATTGT
CCAGCAGGGACTGAGGATCCCACGCAGTGTGAGAACGCCACTGTTAGTGG
ACCCTGTCCAGCCGGGCATTATTGTCCAGCAGGGACTGAGGATCCCACGC
AGTGTGAGAACGCCACTGTTAGAGCCGTTCTCATGGGTGTCTCTTCGGAT
GATTGTGGAGTCTGCCCACCGGGATACGTTTGCTTCCCGGGCCAGACCGT
GCCCGAACAGTGTTACAGGGGTTACTACTGTCCTGAGAGCCGTTCTCATG
GGTGTCTCTTCGGATGATTGTGGAGTCTGCCCACCGGGATACGTTTGCTT
CCCGGGCCAGACCGTGCCCGAACAGTGTTACAGGGGTTACTACTGTCCTG
AGGGCTTGGACCCTATTCCCTGTCCGATCAACACCTACAACGAGTTCGTT
GAGCAAGATGACCAGGAAGATTGCTTTGCTTGTCCGGCGGGGTACTACTG
CTACATTGAGGGCTTGGACCCTATTCCCTGTCCGATCAACACCTACAACG
AGTTCGTTGAGCAAGATGACCAGGAAGATTGCTTTGCTTGTCCGGCGGGG
TACTACTGCTACATTGAGGGAATTGGCGATTATAGCCAATACCCTTGCCC
AGCCGGACACTACTGCCTGACGCGGGAGGACGAACCAGTAGAATGCCCTG
CCGGGAGATACCGAAACAACACCGGTGCAACCTCTGCGGACGACTGCCTC
CAGTGCCCCGGCGGATTTCAATGCTCTGCTGCGACTACTGATCCTCAGGG
AATTGGCGATTATAGCCAATACCCTTGCCCAGCCGGACACTACTGCCTGA
CGCGGGAGGACGAACCAGTAGAATGCCCTGCCGGGAGATACCGAAACAAC
ACCGGTGCAACCTCTGCGGACGACTGCCTCCAGTGCCCCGGCGGATTTCA
ATGCTCTGCTGCGACTACTGATCCTCAGGTCTGCCCCAGCAAAACCTACT
GCCCGACTGGGGCATCGAATGCGACCACCTGCACGGCGGGTTTTTACTGT
CCGGTGGAGACGGCCGAACCTATCATCTGCCCAGGTGGATACTACTGTCC
TCTAGGCAGTTCTGAGCCGATACTTTGTGTCCTCGGAACGTTCTGCCCTG
AGGGCGCGGAAATCTATACGTCGTGCCCATTGGGTGTCTGCCCCAGCAAA
ACCTACTGCCCGACTGGGGCATCGAATGCGACCACCTGCACGGCGGGTTT
TTACTGTCCGGTGGAGACGGCCGAACCTATCATCTGCCCAGGTGGATACT
ACTGTCCTCTAGGCAGTTCTGAGCCGATACTTTGTGTCCTCGGAACGTTC
TGCCCTGAGGGCGCGGAAATCTATACGTCGTGCCCATTGGGT
back to top