mRNA_H-paniculata_contig9049.16889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9049.16889.1
Unique NamemRNA_H-paniculata_contig9049.16889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: A0A6H5KUX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.630e-59
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1
Query:   40 GGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPLPTV 318
            GGNLLLLDEPTNDLDVDTLRALE+AID YPGCAVIVSHDRYFLD+VATHTLAFEDDGGVVWFEGSFAEYEQDL+RR GGNEPKRPKFRPLP V
Sbjct:    6 GGNLLLLDEPTNDLDVDTLRALEDAIDAYPGCAVIVSHDRYFLDKVATHTLAFEDDGGVVWFEGSFAEYEQDLRRRAGGNEPKRPKFRPLPAV 98          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: D7G5T9_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T9_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 3.740e-54
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 1
Query:   31 LFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPLPTV 318
            L QGGNLLLLDEPTNDLDVDTLRALE+AID YPGCAVIVSHDRYFLD+VATHTLAFEDDGGVVWFEGSFAEYEQDL+RR GGNEPKRPKFRPLP V
Sbjct:  588 LKQGGNLLLLDEPTNDLDVDTLRALEDAIDAYPGCAVIVSHDRYFLDKVATHTLAFEDDGGVVWFEGSFAEYEQDLRRRAGGNEPKRPKFRPLPAV 683          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: W7U335_9STRA (Abc transporter atp-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U335_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.160e-48
Identity = 81/96 (84.38%), Postives = 88/96 (91.67%), Query Frame = 1
Query:   31 LFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPLPTV 318
            L QGGNLLLLDEPTNDLDVDTLRALE+AI+ Y GCAVI+SHDRYFLDRVATH LAFEDDG VVWFEG F+EY++DL+ RNGG EPKRPKFRPLPTV
Sbjct:  569 LKQGGNLLLLDEPTNDLDVDTLRALEDAIEAYAGCAVIISHDRYFLDRVATHILAFEDDGNVVWFEGDFSEYQRDLQARNGGVEPKRPKFRPLPTV 664          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: A0A7S2V3L5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.080e-48
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1
Query:   40 GGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPLPTV 318
            GGNLLLLDEPTNDLDVDTLRALEEAI+ + GC V+VSHDR+FLDR+ATH LAFEDDG VVWFEG+ AEYE DLKRRNGG  P RPK+RPLP +
Sbjct:  110 GGNLLLLDEPTNDLDVDTLRALEEAIEEFVGCVVVVSHDRWFLDRIATHILAFEDDGNVVWFEGNHAEYEADLKRRNGGVAPTRPKYRPLPAI 202          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: A0A835Z1K8_9STRA (ABC transporter ATP-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 6.080e-44
Identity = 73/96 (76.04%), Postives = 83/96 (86.46%), Query Frame = 1
Query:   31 LFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPLPTV 318
            L QGGN+L+LDEPTNDLD  TLRALE+AI G+ GCA+IVSHDRYFLDR++TH LAFEDDG   WFEG+F EYE DLKRRNGG EPKRPKFRP+P +
Sbjct:  508 LKQGGNVLMLDEPTNDLDHFTLRALEDAIQGFSGCAIIVSHDRYFLDRLSTHILAFEDDGTTTWFEGNFGEYEADLKRRNGGAEPKRPKFRPMPVL 603          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: T0ZX24_9ZZZZ (ABC transporter, ATP-binding protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0ZX24_9ZZZZ)

HSP 1 Score: 137 bits (344), Expect = 2.920e-39
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   22 SSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGN--EPKRPKFRPL 309
            +S+L +GGN+LLLDEPTNDLDVDTLRALE+A++ +PGCAV++SHDR+FLDRVATH LAFE D GV WFEG+F++YE D  RR G +  +P R  ++PL
Sbjct:   50 ASVLRRGGNVLLLDEPTNDLDVDTLRALEDALESFPGCAVVISHDRWFLDRVATHVLAFEGDAGVRWFEGNFSDYEADRHRRLGADADQPHRFHYKPL 147          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: A0A355BNT0_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A355BNT0_9BACT)

HSP 1 Score: 134 bits (337), Expect = 1.290e-38
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 MTNCTPSSSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKFRPL 309
            M N    +  L QGGNLLLLDEPTNDLDV+TLRALEEA++ + GCAVI+SHDR+FLDRV TH LAFE D  V WFEG+F+EYE++ ++R G ++P R K++ L
Sbjct:   14 MRNRAHLAIALKQGGNLLLLDEPTNDLDVNTLRALEEALENFGGCAVIISHDRWFLDRVCTHILAFEGDSQVFWFEGTFSEYEENKRKRLGDDQPHRIKYKKL 116          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: A0A7Y3GB67_9DELT (ATP-binding cassette domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GB67_9DELT)

HSP 1 Score: 133 bits (335), Expect = 6.810e-38
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   22 SSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGN--EPKRPKFRPL 309
            + LL  GGN+LLLDEPTNDLDVDTLRALEEA+ G+ GCAV++SHDR+FLDR+ATH LAFE D  V WFEG++ +YE D KRR G +  +P R KF+ L
Sbjct:   51 AKLLTSGGNVLLLDEPTNDLDVDTLRALEEALLGFAGCAVVISHDRWFLDRIATHMLAFEGDSHVEWFEGNYQDYEADWKRRKGADADQPHRIKFKKL 148          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: UPI0019B29DF1 (ATP-binding cassette domain-containing protein n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI0019B29DF1)

HSP 1 Score: 135 bits (341), Expect = 9.550e-38
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   22 SSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNG--GNEPKRPKFRPL 309
            + +L  GGN+L+LDEPTNDLDV+TLRALEEA+  YPGCAV++SHDR+FLDR+ATH LAFE +  VVWFEG+F +Y +DLKRR G    +P R K++PL
Sbjct:  137 AKVLKSGGNVLMLDEPTNDLDVETLRALEEALLAYPGCAVVISHDRWFLDRIATHILAFEGNSEVVWFEGNFQDYMEDLKRRKGEEATQPHRIKYKPL 234          
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Match: UPI0004A299F6 (ATP-binding cassette domain-containing protein n=1 Tax=Ectothiorhodospira haloalkaliphila TaxID=421628 RepID=UPI0004A299F6)

HSP 1 Score: 132 bits (331), Expect = 1.430e-37
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   22 SSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVSHDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGN--EPKRPKFRPLPT 315
            + LL  GGNLLLLDEPTNDLDV+TLRALEEAI  +PG AV++SHDR+FLDR+ATH LAFE+DG VV+FEG++ +YE+D ++R G +  +P R K+R L T
Sbjct:   29 AKLLRSGGNLLLLDEPTNDLDVETLRALEEAILDFPGSAVVISHDRWFLDRIATHILAFEEDGNVVFFEGNYQDYEEDRRKRLGSDADQPHRVKYRRLET 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9049.16889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUX1_9PHAE2.630e-5993.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5T9_ECTSI3.740e-5492.71ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
W7U335_9STRA1.160e-4884.38Abc transporter atp-binding protein n=2 Tax=Monodo... [more]
A0A7S2V3L5_9STRA8.080e-4879.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z1K8_9STRA6.080e-4476.04ABC transporter ATP-binding protein n=1 Tax=Tribon... [more]
T0ZX24_9ZZZZ2.920e-3965.31ABC transporter, ATP-binding protein n=1 Tax=mine ... [more]
A0A355BNT0_9BACT1.290e-3862.14Energy-dependent translational throttle protein Et... [more]
A0A7Y3GB67_9DELT6.810e-3865.31ATP-binding cassette domain-containing protein n=1... [more]
UPI0019B29DF19.550e-3864.29ATP-binding cassette domain-containing protein n=1... [more]
UPI0004A299F61.430e-3764.00ATP-binding cassette domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9049contigH-paniculata_contig9049:6313..7209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.7e-46
Seed eggNOG ortholog2880.D7G5T9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.9964185-CDS-H-paniculata_contig9049:6312..64171622931128.9964185-CDS-H-paniculata_contig9049:6312..6417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9049 6313..6417 -
1691481603.360995-CDS-H-paniculata_contig9049:6312..64171691481603.360995-CDS-H-paniculata_contig9049:6312..6417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9049 6313..6417 -
1622931129.0186317-CDS-H-paniculata_contig9049:6993..72091622931129.0186317-CDS-H-paniculata_contig9049:6993..7209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9049 6994..7209 -
1691481603.3740258-CDS-H-paniculata_contig9049:6993..72091691481603.3740258-CDS-H-paniculata_contig9049:6993..7209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9049 6994..7209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9049.16889.1prot_H-paniculata_contig9049.16889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9049 6313..7209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9049.16889.1

>prot_H-paniculata_contig9049.16889.1 ID=prot_H-paniculata_contig9049.16889.1|Name=mRNA_H-paniculata_contig9049.16889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MTNCTPSSSLLFQGGNLLLLDEPTNDLDVDTLRALEEAIDGYPGCAVIVS
HDRYFLDRVATHTLAFEDDGGVVWFEGSFAEYEQDLKRRNGGNEPKRPKF
RPLPTV*
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mRNA from alignment at H-paniculata_contig9049:6313..7209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9049.16889.1 ID=mRNA_H-paniculata_contig9049.16889.1|Name=mRNA_H-paniculata_contig9049.16889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=897bp|location=Sequence derived from alignment at H-paniculata_contig9049:6313..7209- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAATTGTACCCCCTCCTCCTCTCTCCTCTTTCAGGGAGGAAACTT GCTGCTGCTGGACGAACCGACTAACGACCTGGACGTGGATACTCTGAGAG CCTTGGAAGAGGCGATCGACGGTTACCCTGGCTGTGCAGTTATCGTCAGC CATGACCGTTACTTCCTGGACAGGGTCGCCACTCACACGCTGGCGTTTGA GGACGACGGAGGCGTGGTACGTACGGGGGAAAGGGAGAGGGCGGCAGGGT AGATCTACTCCTGGTATTTTTCGATTACATGGCTTCCAGCTTTTATTCTG ATGCTACGTGCCGGTCAGTAGAAGTAAGCGCATGACGAGGCATTGCCTGA GGCGCAGTGCAGTACTCGAATGGGTTGTGTTCCAGAAGTAAGTAGCAAAG ATGTGCGTCACGAATGGTCGTTCTTTCCAAAATATGGGCCCGAGTGAATG CTACAATCACGTTGTGAGGTGTGTCGTTTCGTACGCTGTTGAACCCTCGA ACCCTAGGACCAATCGCCGAGGACGTTGTCTTGGATCTCTATTTCTAAGG GCTATCGTGCACATACCTTGTCAAGGTCTGAAGAGATGGACATGGCTTAC GAGCAGTTGCATGCGGTGGAAGCATTGACCGCTCGCGCATCAGACCGATA AATAACCTACCTGACTCACACCCGGGTCGTAAATGGGCCGTTCGCGGTCC AAGGGTTTCCATGTTTGATTTTTTGCTGAGCATGCTCTGACGAATACACG TGTTTTCCTGGTCCTTCCGTGATAATTTTTGCTGAAAAACAGGTGTGGTT CGAGGGAAGCTTCGCAGAGTACGAGCAGGACTTGAAGAGGCGGAATGGCG GGAATGAACCGAAGAGGCCTAAGTTCCGCCCGTTACCGACGGTCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9049:6313..7209-

>mRNA_H-paniculata_contig9049.16889.1 ID=mRNA_H-paniculata_contig9049.16889.1|Name=mRNA_H-paniculata_contig9049.16889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9049:6313..7209- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAATTGTACCCCCTCCTCCTCTCTCCTCTTTCAGGGAGGAAACTT
GCTGCTGCTGGACGAACCGACTAACGACCTGGACGTGGATACTCTGAGAG
CCTTGGAAGAGGCGATCGACGGTTACCCTGGCTGTGCAGTTATCGTCAGC
CATGACCGTTACTTCCTGGACAGGGTCGCCACTCACACGCTGGCGTTTGA
GGACGACGGAGGCGTGATGACTAATTGTACCCCCTCCTCCTCTCTCCTCT
TTCAGGGAGGAAACTTGCTGCTGCTGGACGAACCGACTAACGACCTGGAC
GTGGATACTCTGAGAGCCTTGGAAGAGGCGATCGACGGTTACCCTGGCTG
TGCAGTTATCGTCAGCCATGACCGTTACTTCCTGGACAGGGTCGCCACTC
ACACGCTGGCGTTTGAGGACGACGGAGGCGTGGTGTGGTTCGAGGGAAGC
TTCGCAGAGTACGAGCAGGACTTGAAGAGGCGGAATGGCGGGAATGAACC
GAAGAGGCCTAAGTTCCGCCCGTTACCGACGGTCTAGGTGTGGTTCGAGG
GAAGCTTCGCAGAGTACGAGCAGGACTTGAAGAGGCGGAATGGCGGGAAT
GAACCGAAGAGGCCTAAGTTCCGCCCGTTACCGACGGTCTAG
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