mRNA_H-paniculata_contig9043.16883.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9043.16883.1
Unique NamemRNA_H-paniculata_contig9043.16883.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9043.16883.1 vs. uniprot
Match: D8LJ47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ47_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 6.800e-39
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 3 
Query:  159 TTLNVNDGGVGEGRGWVAPKVPVSTITSFGQELGIGELQSLGKVLDIENEGEQLAFPFSSSLFDISNAVLFYAHNGRMDAAQEKLNDGELLVSSELKAVDDGYRKEGIRHDRVSSALEQLVKAKAFVHFLNTG 557
            T L+++D   G GR  + P+VPVS++T+FGQ LG  ELQSLGK ++  NEGE+L FPF   L+D+SNA LFYAHNGR+DAAQE+L  G  L++SEL+ VD    K+G+R++RVS ALE LVKAKAFV+FL TG
Sbjct:   56 TRLSMSDD-TGGGR-VIRPRVPVSSVTAFGQGLGQEELQSLGKEMEASNEGERLVFPFVGKLYDVSNAALFYAHNGRLDAAQEQLKAGADLMASELEGVDKACSKDGVRNERVSGALENLVKAKAFVYFLQTG 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9043.16883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ47_ECTSI6.800e-3959.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9043contigH-paniculata_contig9043:571..4654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue8.4e-35
Seed eggNOG ortholog2880.D8LJ47
Preferred nameTSN
KEGG rclassRC00017
KEGG koko:K04500,ko:K05287
KEGG ReactionR05923,R05924,R08107
KEGG Pathwayko00563,ko01100,ko04068,ko04110,ko04144,ko04218,ko04350,ko04371,ko04390,ko04520,ko04550,ko04659,ko04926,ko04933,ko05142,ko05166,ko05200,ko05210,ko05212,ko05225,ko05226,ko05321,map00563,map01100,map04068,map04110,map04144,map04218,map04350,map04371,map04390,map04520,map04550,map04659,map04926,map04933,map05142,map05166,map05200,map05210,map05212,map05225,map05226,map05321
KEGG ModuleM00065,M00680,M00681
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0019222,GO:0031047,GO:0031647,GO:0031667,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0035939,GO:0040029,GO:0042162,GO:0042321,GO:0042594,GO:0042595,GO:0042749,GO:0042752,GO:0042754,GO:0042802,GO:0042803,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045187,GO:0046483,GO:0046983,GO:0048519,GO:0048521,GO:0050789,GO:0050795,GO:0050821,GO:0050896,GO:0051239,GO:0051241,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098847,GO:0140098,GO:1901360,GO:1901363,GO:1990605,GO:1990837
EggNOG free text desc.single-stranded DNA binding
EggNOG OGsKOG3067@1,KOG3067@2759
Ec32 ortholog descriptionTranslin
Ec32 orthologEc-02_004740.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size862
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9043.16883.1prot_H-paniculata_contig9043.16883.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9043 603..4373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.2954528-UTR-H-paniculata_contig9043:570..6021622931128.2954528-UTR-H-paniculata_contig9043:570..602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9043 571..602 +
1691481603.0581274-UTR-H-paniculata_contig9043:570..6021691481603.0581274-UTR-H-paniculata_contig9043:570..602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9043 571..602 +
1622931128.3658385-UTR-H-paniculata_contig9043:4373..46541622931128.3658385-UTR-H-paniculata_contig9043:4373..4654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9043 4374..4654 +
1691481603.1121538-UTR-H-paniculata_contig9043:4373..46541691481603.1121538-UTR-H-paniculata_contig9043:4373..4654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9043 4374..4654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.3148913-CDS-H-paniculata_contig9043:602..8451622931128.3148913-CDS-H-paniculata_contig9043:602..845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 603..845 +
1691481603.0783708-CDS-H-paniculata_contig9043:602..8451691481603.0783708-CDS-H-paniculata_contig9043:602..845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 603..845 +
1622931128.3315284-CDS-H-paniculata_contig9043:3647..37891622931128.3315284-CDS-H-paniculata_contig9043:3647..3789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 3648..3789 +
1691481603.090874-CDS-H-paniculata_contig9043:3647..37891691481603.090874-CDS-H-paniculata_contig9043:3647..3789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 3648..3789 +
1622931128.347446-CDS-H-paniculata_contig9043:4209..43731622931128.347446-CDS-H-paniculata_contig9043:4209..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 4210..4373 +
1691481603.101855-CDS-H-paniculata_contig9043:4209..43731691481603.101855-CDS-H-paniculata_contig9043:4209..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9043 4210..4373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9043.16883.1

>prot_H-paniculata_contig9043.16883.1 ID=prot_H-paniculata_contig9043.16883.1|Name=mRNA_H-paniculata_contig9043.16883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MLLLVSRSISLGRVVAVFSNTVLPHGVSRFALAPSARTFMSATTLNVNDG
GVGEGRGWVAPKVPVSTITSFGQELGIGELQSLGKVLDIENEGEQLAFPF
SSSLFDISNAVLFYAHNGRMDAAQEKLNDGELLVSSELKAVDDGYRKEGI
RHDRVSSALEQLVKAKAFVHFLNTGLFAIMIA*
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mRNA from alignment at H-paniculata_contig9043:571..4654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9043.16883.1 ID=mRNA_H-paniculata_contig9043.16883.1|Name=mRNA_H-paniculata_contig9043.16883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4084bp|location=Sequence derived from alignment at H-paniculata_contig9043:571..4654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTAATCTACTGTACTGAACGGTTCATCTGCATGCTGCTACTCGTATCT
AGATCAATATCTCTCGGTCGCGTAGTGGCAGTTTTTTCGAACACGGTTCT
CCCACACGGTGTATCGCGGTTTGCACTAGCTCCAAGCGCTCGAACTTTCA
TGTCAGCAACAACCTTAAACGTCAACGATGGTGGCGTCGGCGAAGGGCGT
GGATGGGTCGCACCGAAGGTTCCTGTCAGCACGATCACCAGCTTTGGACA
AGAGCTGGGCATCGGCGAATTGCAGGTTACACTTTACGTCTACACAATGT
TCCAATGATATGTCAACTTGGTCCCTACCTAATGCCTGTGAGACATGCGC
GCGAGAGAGCACGGCGACGTCTTGTCGCATTCACCCCGAACGGTTTCAAG
AGTTTTAAAGGTTCCACAATACAAGAGGGAAAGCACACCAGTCTCAAAAT
GCAAGAACTATTTCAAGTTCGATTAATGTACAAAGACAGTAGGCTTGAAC
TTGTGGCAAAAAAGTTTGCAAGACCCTGAGAAAAACCACGTCACCATACA
TGATGTTGCGCTGTGAAGAAGGCGTATTCGGGTAGCTCACCCAACCGGAG
CTGTGTTTCCTTCTGCTGGTCAAAAATATTCATGATCGTGCTTCATTTGT
TTTTATGAGTTGCAAGTCGAGTAAAGCTGCAACCCACGCCTAACCCGAAC
CCTGACCCTATCCTTGAGCCAAGCCTAACCAGGGGTCGAATCGGCCCCCA
GTAGTGTCTAAAATCGCCTAAACTCTGCGCTGCTCCGTGGCGTTGCAATG
AACCTGAAGCCAGGCTCTCGAGGTCGGGCAGTGAACGCACCGGAGCAACC
AAGTAGTTGAGACAATCATGGATATTTTTCCACGGGCAGCGAGTAACGCC
GCTGCCCACTTGACAGTAATCTGCAACCAGTGGCAAAATAAACCAAGTGT
TGATTGGATTGCGGTTGCGTTCTTGTTTTCATATCGTTGTTTGAGTTCAA
TCATCGCAGAATTGGCTGGAATTACAGCAATTCGCGTGAAGTTGGAACAC
AAAACGTGCCATTTTTTTTCACTGTTTGTGTGATGCTCGGTAGGCAAGCG
CCGAAATCACAGTTCTCGATCAGTTTGGAACGCATTCAGACCGAACCAAG
TACACGGTGCTCAGTTTATCAAAGACCTACTCCTCAAGCTAGGTGATGAT
TGGTAATGCTTTATACATGACGCGTTCCTTTGTCAACCCTTGTAATCCCT
CGGCAGCTTGTGACTTTCGTCACTACGTGTTGCAACCACAGAGCTTGATT
GTTCTTAAAGAGGAAATTGGGCATTTTCAGAGGCAATGAGGTTTGGGAAA
AAAACGTGGATTGTTCTTTTACCCTCCAAATTTTTTCATGCTTTTGATTT
ATCACAGGGAATCACCGATAAAATAGACAGCTAGAGAGATCAACCCGTTG
GCCGCGTAGGGTGGCCAGTTGGCCATACAGCGGTTGTTCACCGGAATGTT
TACGGTCCAAATTTGTTTTTGGAAGGACGCATAACGCCTAGTTGCATGAT
AACAGGGGTGATGCACTTGAAGCCGAAACAATTATTTTGTATCGCTATAG
TCGGCCTGTGACAGCTTAGCGTAGGCTGCGTGCTGCTCAGTGTTTGCGTG
TCATCACGTCAACGTGACAATACCACACCATGCACCATTGTACAACGGGT
ACCGCTACGGCTCTATCGGGCGAGCTACTATCTTTTAACGTCTCTCCGTC
CATGTTTTTTATCGTAACTGCGGTGTTTTCAGCGCACATTTGATGCCGTA
ATACACAAACTGTAGCGCGTGTCTCTTCCGTCCGTGCATAGCGACTCTAC
GGTAGGGTGTTGAGTGTGTTTCCAACTCTGCCACGTTTCAAGTTGGTTTA
TGTAGTGCAATCTTTCAGCTGCACCGCCGGTACGCAAAGGCTCCTTCGGC
CTGAGTGGGTCTGATTTCACCCACCCAGAGTTTGTTGGTCTGTGCTTATC
TCTGTTGATTCATGTGTGCGTCATCGCCGTGCACAACGGTACTGTAGTCA
GGCGAAATCTGAGTCAAGCTATCTGCCACAGCTCAAGCCCGTGCTCTGCT
GTTCTGTCAGCTGCATTACATCCACACCAGGGGCCGTTCTAATCGTTGCT
ATTTTTCCCCCCTTTTCTCCTATTTTATTTTCCTTCTCCCCTTTTTTTTT
ATCTCATCAAATTTCTCGACTTTATACGTACAGTGTTCCTTAATCCTATT
CCGAATTTTTTCGATTTTTTCTTCTGACATAATCTCAATGTGTTATCGGC
AAAAAAAAAAAAAAAAAGGAAAGGAGAAGGCAAAGGACCCATGTTTGGAA
TGGCTCTAAGACTCTAACCTGTGCACTGGTCTCCCAAAAAATTAGCCTCT
CTGTTCTCGTGTAGAACAATCTTCGCCAACGCAGCTTTGAATTTTTTTGT
GCTCATGGTCAAAGGGTCCAAAGTTTCCGAAAATAGTCAAACCGTAGAAT
TGTCACTTGGTAGAGAAGGCATGGTTTAATGTTCAGCCGAGTTTTCAAAC
GATTTTGCCTAACGGGCACATTTCAGGGAGAAGAGGGGACAGTTTCATAG
TAGATGGAGGCAGAGCGATGCATTCCAACTAGTAGTTTTAGGCGCGGAGC
GCAACTTTATGTGTATTTTGTAGATTGCTGTGAAGGGGGGAAATGGCCAA
CCACGTGGTGTAGAGTTCAAGCTGTAGGCGCTATGCTGGGATATATCGTG
GTGCTGTGGTGCAACCGTCGCCTCAACGATCCGACTCCAGGCATACTACG
AAATTTTTGGTGAGGATATTGAGCTGTGTGGTGACGCAACTGCCTCAGTT
GCATTGTTCTGATATGATGGGCTTGATGTTGTGGCAATTGGGCAAATGAT
CTGCGTAGTAAATAGTAGAGCGCTGCCATAAACAAACCAACGTAGCTTCC
CCATCATCCATCGTCCAACATACCCAATGTATCTGTTAGCTGGTCAGTTT
GCCTGCGCTTGCCTGCAACCAAATAGTATACAATTGGCGCCCCGTTGTTT
TTGCACCGCTGCACCTTATGTGCGCAGTCTCTCGGCAAGGTATTGGATAT
AGAGAATGAGGGCGAACAGCTAGCCTTCCCTTTCTCGAGCTCTTTGTTCG
ACATCTCCAACGCTGTGCTGTTCTATGCGCACAACGGACGAATGGATGCT
GCGCAGGAGAAACTCAACGGTGAGCAAGACCAACCCACAGCGAATAAGAG
CGATAATCTTGCCGAGAACCGTGCATAATATGCATGCATTTGGAACTCAT
ACATGGGACATACTTGGATGTGGATGAAGCAACACAATACGCGACACGAA
AGTAGGTTGGTTGCTCAGGAGAGCAGCACAGCGCATGCTCGAGTCCTTCC
AGTGGCCGTTTTTGTTGTCTACGGTAGGTAGCCTTAGACCGTCCGTCAGC
ACAACTCGGGGGCACAAAGAGAAATAGCAAGACATGCTTTTTTTTCTCTT
TCCAAATCTTGAATCGGGTCGGCCGTTCGTCATTCACATCTTACCGTAAT
CTACTCATCCCGAAACCTTTTGCTTCCGTCCCCCGTTTTAACGATGTCCC
GCGTTATGGGCGTTGGAATAACGCGCGTTCGGGGCTCAGATGGCGAATTG
CTGGTGTCATCTGAACTGAAGGCCGTCGACGACGGGTACCGCAAGGAAGG
GATTCGGCATGACCGAGTGTCCAGCGCTCTGGAGCAGCTTGTCAAGGCCA
AGGCTTTCGTGCACTTCTTGAATACAGGCTTGTTTGCCATCATGATAGCT
TAGGGCTTTTCCTTATCGGATGCACTTTCATCCGTCAAGTACTGCGTCAG
GAGTACATATCGTAGATTACTACCACGGGCAAGGTTGACTTGTCAGTTCC
TATTGCACGCCACGGTACCCAATATGGAGCAATTTGTTTGCTCCGATCTC
ACGGAATCCGGCACACAAAGAGTCGGAAAAGAGATGACGATCATGAACAC
CTGACGACGGCGGCGTTTTCTCGGAGTAGTTCTTGTTCCCTGACTAAACC
TTTTGAACAGTGTAAGGTGGTCCGTGTGGAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9043:571..4654+

>mRNA_H-paniculata_contig9043.16883.1 ID=mRNA_H-paniculata_contig9043.16883.1|Name=mRNA_H-paniculata_contig9043.16883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig9043:571..4654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTACTCGTATCTAGATCAATATCTCTCGGTCGCGTAGTGGCAGT
TTTTTCGAACACGGTTCTCCCACACGGTGTATCGCGGTTTGCACTAGCTC
CAAGCGCTCGAACTTTCATGTCAGCAACAACCTTAAACGTCAACGATGGT
GGCGTCGGCGAAGGGCGTGGATGGGTCGCACCGAAGGTTCCTGTCAGCAC
GATCACCAGCTTTGGACAAGAGCTGGGCATCGGCGAATTGCAGATGCTGC
TACTCGTATCTAGATCAATATCTCTCGGTCGCGTAGTGGCAGTTTTTTCG
AACACGGTTCTCCCACACGGTGTATCGCGGTTTGCACTAGCTCCAAGCGC
TCGAACTTTCATGTCAGCAACAACCTTAAACGTCAACGATGGTGGCGTCG
GCGAAGGGCGTGGATGGGTCGCACCGAAGGTTCCTGTCAGCACGATCACC
AGCTTTGGACAAGAGCTGGGCATCGGCGAATTGCAGTCTCTCGGCAAGGT
ATTGGATATAGAGAATGAGGGCGAACAGCTAGCCTTCCCTTTCTCGAGCT
CTTTGTTCGACATCTCCAACGCTGTGCTGTTCTATGCGCACAACGGACGA
ATGGATGCTGCGCAGGAGAAACTCAACGTCTCTCGGCAAGGTATTGGATA
TAGAGAATGAGGGCGAACAGCTAGCCTTCCCTTTCTCGAGCTCTTTGTTC
GACATCTCCAACGCTGTGCTGTTCTATGCGCACAACGGACGAATGGATGC
TGCGCAGGAGAAACTCAACGATGGCGAATTGCTGGTGTCATCTGAACTGA
AGGCCGTCGACGACGGGTACCGCAAGGAAGGGATTCGGCATGACCGAGTG
TCCAGCGCTCTGGAGCAGCTTGTCAAGGCCAAGGCTTTCGTGCACTTCTT
GAATACAGGCTTGTTTGCCATCATGATAGCTTAGATGGCGAATTGCTGGT
GTCATCTGAACTGAAGGCCGTCGACGACGGGTACCGCAAGGAAGGGATTC
GGCATGACCGAGTGTCCAGCGCTCTGGAGCAGCTTGTCAAGGCCAAGGCT
TTCGTGCACTTCTTGAATACAGGCTTGTTTGCCATCATGATAGCTTAG
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