mRNA_H-paniculata_contig9040.16880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9040.16880.1
Unique NamemRNA_H-paniculata_contig9040.16880.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Match: A0A6H5JN30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN30_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 4.170e-58
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIRPSDGKFERTPFFDTIIRRGLRNSTRFDASTLTEEEVEALGMHRDETVGSKLQIRHFRSRRKE 321
            YRWLVTRHPAQFER+DFTAQILQSASRARKAFYECGW EA+VLIRPSDGKFERTPFFD IIRRGLRNSTRFDA+TLTE+E+EALGMHRDET+G KLQIRHFRS RKE
Sbjct:   22 YRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKE 128
[Close]
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Match: A0A836CGN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.480e-22
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIRPSDGKFERTPFFDTIIRRGLRNSTRFDASTLTEEEVEALGMHRDETVGSKLQIRHF 303
            YRWL+ RHP QFE    T  +L+ A  ARKAF+ CGW  A++LIR  +G++ERT FFDTII RGL+ STRF    LT  E +AL + +    G+K  + HF
Sbjct:   15 YRWLLARHPKQFEARGVTTTVLERAPAARKAFWTCGWPGAQLLIRCVEGRYERTVFFDTIIARGLQLSTRFAYPHLTPAESDALQIRQS---GAKHYLSHF 112
[Close]
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Match: A0A836C9L8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.650e-21
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIRP-SDGKFERTPFFDTIIRRGLRNSTRFDASTLTEEEVEALGMHRDETV 276
            YRWL+ RH   F R   T + L+SASRAR+AF++ GWE AR+LIR  S G+ ERTP F+TII+RGL   TRFD  T++  E   LG+  D T+
Sbjct:  348 YRWLMARHADIFARCGITTKTLESASRARQAFHQSGWEGARMLIRADSQGRHERTPLFETIIKRGLSKGTRFDIDTISAREQATLGITFDSTL 440
[Close]
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Match: A0A835Z9J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.160e-18
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIRPSDGKFERTPFFDTIIRRGLRNSTRFDASTLTEEEVEALGMHRDETVGSKLQIRHF 303
            YRWL+ RHP QFE+   T+  L+ A  ARKA +   W  ++ L+R  +G++ERT FFDT I+RGL   TRF    LT +E + LG+  D T   K+ + H+
Sbjct:   19 YRWLLQRHPRQFEKEGLTSTALERAPVARKALFHTSWSGSKKLVRCVEGRYERTVFFDTFIKRGLGFGTRFAIEHLTPQERQILGICEDPT--GKVYLAHY 117
[Close]
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Match: A0A835YVN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.850e-17
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIR-PSDGKFERTPFFDTIIRRGLRNST--RFDASTLTEEEVEALGMHRD 267
            YRWL+ R+   FE    T + L+SA RAR+AFY  GW  AR LI+  S G+ ERTPFF+ II+RG+R+ +  RFD + LT  E+ +LG+ R+
Sbjct:   16 YRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRN 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9040.16880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JN30_9PHAE4.170e-5890.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGN8_9STRA1.480e-2250.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9L8_9STRA1.650e-2152.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9J0_9STRA3.160e-1843.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVN4_9STRA1.850e-1748.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9040contigH-paniculata_contig9040:145..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.883176-CDS-H-paniculata_contig9040:144..4651622931127.883176-CDS-H-paniculata_contig9040:144..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9040 145..465 +
1691481602.8967278-CDS-H-paniculata_contig9040:144..4651691481602.8967278-CDS-H-paniculata_contig9040:144..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9040 145..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9040.16880.1prot_H-paniculata_contig9040.16880.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9040 145..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9040.16880.1

>prot_H-paniculata_contig9040.16880.1 ID=prot_H-paniculata_contig9040.16880.1|Name=mRNA_H-paniculata_contig9040.16880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
YRWLVTRHPAQFERMDFTAQILQSASRARKAFYECGWEEARVLIRPSDGK
FERTPFFDTIIRRGLRNSTRFDASTLTEEEVEALGMHRDETVGSKLQIRH
FRSRRKE
back to top

mRNA from alignment at H-paniculata_contig9040:145..465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9040.16880.1 ID=mRNA_H-paniculata_contig9040.16880.1|Name=mRNA_H-paniculata_contig9040.16880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig9040:145..465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCGCTGGCTGGTGACGAGACATCCGGCGCAGTTTGAGAGGATGGACTT
TACGGCGCAAATTCTGCAGAGCGCGTCTCGAGCGCGCAAGGCCTTTTACG
AGTGCGGGTGGGAAGAGGCTAGGGTCCTGATTCGCCCCTCGGACGGGAAG
TTTGAACGGACGCCATTTTTCGACACCATTATTCGCCGTGGCCTGCGCAA
CAGCACGCGCTTCGACGCATCCACTCTGACTGAGGAAGAAGTGGAAGCGC
TGGGTATGCACCGCGACGAGACTGTGGGTTCGAAGCTACAGATCCGTCAT
TTCCGCAGTCGTCGGAAAGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9040:145..465+

>mRNA_H-paniculata_contig9040.16880.1 ID=mRNA_H-paniculata_contig9040.16880.1|Name=mRNA_H-paniculata_contig9040.16880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9040:145..465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCGCTGGCTGGTGACGAGACATCCGGCGCAGTTTGAGAGGATGGACTT
TACGGCGCAAATTCTGCAGAGCGCGTCTCGAGCGCGCAAGGCCTTTTACG
AGTGCGGGTGGGAAGAGGCTAGGGTCCTGATTCGCCCCTCGGACGGGAAG
TTTGAACGGACGCCATTTTTCGACACCATTATTCGCCGTGGCCTGCGCAA
CAGCACGCGCTTCGACGCATCCACTCTGACTGAGGAAGAAGTGGAAGCGC
TGGGTATGCACCGCGACGAGACTGTGGGTTCGAAGCTACAGATCCGTCAT
TTCCGCAGTCGTCGGAAAGAATATCGCTGGCTGGTGACGAGACATCCGGC
GCAGTTTGAGAGGATGGACTTTACGGCGCAAATTCTGCAGAGCGCGTCTC
GAGCGCGCAAGGCCTTTTACGAGTGCGGGTGGGAAGAGGCTAGGGTCCTG
ATTCGCCCCTCGGACGGGAAGTTTGAACGGACGCCATTTTTCGACACCAT
TATTCGCCGTGGCCTGCGCAACAGCACGCGCTTCGACGCATCCACTCTGA
CTGAGGAAGAAGTGGAAGCGCTGGGTATGCACCGCGACGAGACTGTGGGT
TCGAAGCTACAGATCCGTCATTTCCGCAGTCGTCGGAAAGAA
back to top