mRNA_H-paniculata_contig9039.16877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9039.16877.1
Unique NamemRNA_H-paniculata_contig9039.16877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: D8LGB0_ECTSI (NAD dependent epimerase/dehydratase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB0_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.970e-66
Identity = 152/260 (58.46%), Postives = 177/260 (68.08%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSG-------SEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLRNPQAK 759
            SV+F GQD+K  SED PYP+R  D  +A  A AEKA L  +     G   MLTCSVRAA  YG+        SE+ LIPGLA RAR    P   VGDGNN VDFVYAGNVAHA++LAAQ + LQ++XXXXXXXXXX         F VTD EP+PYG+FA R LS LGY   AG S  GMS+  A+ LA LLRVLA+VVSPV + RP LTA R+AEE   +R D S AR+ LGY PLWSQEEGL+ITL  + +LRNP+AK
Sbjct:  141 SVLFGGQDLKLISEDAPYPSRFADPPAAYIAEAEKAVLEANVDSSSGSSTMLTCSVRAAPSYGAADEEGEASSEDRLIPGLAFRARAGVRP---VGDGNNAVDFVYAGNVAHALLLAAQSM-LQASXXXXXXXXXXAVAGRA---FHVTDMEPIPYGEFAARALSRLGYPDGAGGS-GGMSVLLATALALLLRVLALVVSPVFEFRPALTALRVAEESAVRRLDTSRAREGLGYTPLWSQEEGLDITLHRATALRNPRAK 392          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A6H5K6C5_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C5_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 5.080e-65
Identity = 151/260 (58.08%), Postives = 173/260 (66.54%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSG-------SEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLRNPQAK 759
            SV+F GQD+K  SED PYP+R  D  +A  A AEKA L  +         MLTCSVRAA  YG+        SE+ LIPGLA RAR    P   VGDGNN VDFVYAGNVAHA++LAAQ + LQ A     XXXXXXXX      F VTD EPVPYG+FA R LS LGY  P GA   GMS+  A+ LA LLRVLA+VVSPV + RP LTA R+AEE   +R D S AR+ LGY PLWSQEEGL+ITL  + +LRNP+AK
Sbjct:  139 SVLFGGQDLKQISEDAPYPSRFADPSAAYIAEAEKAVLEANADS-SRSSTMLTCSVRAAPSYGAADEGEEASSEDRLIPGLAFRARAGVRP---VGDGNNAVDFVYAGNVAHALLLAAQSM-LQ-ASLATAXXXXXXXXAVAGRAFHVTDMEPVPYGEFAARALSRLGY--PDGAGSGGMSVLLATALALLLRVLALVVSPVFEFRPALTALRVAEESAVRRLDTSRAREGLGYTPLWSQEEGLDITLHGATALRNPRAK 390          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A836CIL1_9STRA (3-beta hydroxysteroid dehydrogenase/isomerase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.380e-31
Identity = 99/255 (38.82%), Postives = 135/255 (52.94%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQAS--KSLRNPQAK 759
            SVVF+G D++A+  D+P  +  +D+ +AA + AE+   A +G G    G + T  VR   +YG+G  + L+P LA  AR A     +VG G+NVVDF YAGNVAHA +LAA+ L    +                      TD EPVPY  F G VL GLGY   A  S   +    A  LA     +A +   VV +RP LT  R+    R Q +  + A + LGY P WS+ E L ITLQ++  ++LRNP A+
Sbjct:  122 SVVFTGSDLRAAGADLPPASPCIDAHTAALSAAEQRVAAFNGRG----GALATAVVRHHNLYGAGDAD-LLPALAQHAREARMQ--VVGGGDNVVDFSYAGNVAHAHLLAARALAAGGSDAAALAGCAVV----------ATDAEPVPYRQFVGGVLEGLGYGSKAATS---VPYAVAFSLALFFHAVAFMFGSVVALRPRLTLGRLKSLTRFQYYSGAAAHELLGYHPPWSRAEALQITLQSADARALRNPAAR 356          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A1W0WSJ5_HYPDU (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WSJ5_HYPDU)

HSP 1 Score: 122 bits (305), Expect = 4.490e-29
Identity = 88/252 (34.92%), Postives = 130/252 (51.59%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLRNPQA 756
            SVV+ G DI    ED PY  R +D+ +A     E+  L  +   +   G +LT +VR   ++G   + +L+P L   ARR G  K I+GDGNNVVDF Y  NVAH ++LAA+ L   +A                   F +T+DEPV + +F  R+L+GLGY  P       +    A +LAF+ R+    +SP+V+  P  T  R+A       +    A+  LGY PL++ ++G+ +TL +   LRN  A
Sbjct:  129 SVVYDGHDILGDDEDSPYALRPIDAYTATKITQEQMVLRAN---MLNNGRLLTVAVRPHGIFGP-RDPNLVPVLIDAARR-GKMKFIIGDGNNVVDFTYVRNVAHGLILAAECLARDTAVGGQA--------------FHITNDEPVLFWEFMARILNGLGYDAPKRCIPRAVVYFLALLLAFVSRL----ISPLVKWEPTFTPMRVALISTHHTYSCEKAKTLLGYQPLFTLDQGIQLTLDSFPELRNEDA 357          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: UPI00033432F0 (sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X1 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI00033432F0)

HSP 1 Score: 120 bits (301), Expect = 1.700e-28
Identity = 81/248 (32.66%), Postives = 133/248 (53.63%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVVF+G D+K  SED+PY    +D  +    + E+A L  S       GN LT ++R   ++G   + +++P L   AR+ G  K I+G+G N+VDF +  NV H  +LAA++L   S+                   F +T+D+P+P+  F  R+L+GL Y  P    +  +    A  LA LL +LAM++SP+VQ++P  T  R+A  G    +    A++ +GY PL + ++ +  T+Q+ + L+
Sbjct:  135 SVVFNGSDVKNGSEDLPYATHPIDYYTKTKILQEQAVLDASDP----DGNFLTTAIRPHGIFGP-RDTNMVPVLVDAARK-GKMKFIIGNGKNLVDFTFVDNVVHGHILAAERLSRDSSLCGKA--------------FHITNDDPIPFWTFLSRILTGLNYEAP----KYRIPYWVAYYLACLLSLLAMLLSPLVQLQPTFTPMRVALAGTFHYYSCEKAKRAMGYRPLVTMDDAVARTVQSFRHLQ 358          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: NSDHL_MOUSE (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=17 Tax=Tetrapoda TaxID=32523 RepID=NSDHL_MOUSE)

HSP 1 Score: 120 bits (301), Expect = 1.720e-28
Identity = 85/248 (34.27%), Postives = 128/248 (51.61%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVVF G DIK  +ED+PY  + +D  +    + E+A L  +        N LT ++R   ++G   +  L+P L   AR+ G  K ++G+G N+VDF +  NV H  +LAA+ L   +A                   F +T+DEP+P+  F  R+L+GL Y  P    +  +    A  LAFLL +L MVVSP++QI+P  T  R+A  G    +    A+K  GY PL + +E +  T+Q+   LR
Sbjct:  136 SVVFEGVDIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDP----KKNFLTAAIRPHGIFGP-RDPQLVPILIDAARK-GKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALGGKA--------------FHITNDEPIPFWTFLSRILTGLNYEAP----KYHIPYWMAYYLAFLLSLLVMVVSPLIQIQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLR 359          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A6P5XQL7_DURZI (3beta-hydroxysteroid- dehydrogenase/decarboxylase-like isoform X2 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XQL7_DURZI)

HSP 1 Score: 114 bits (286), Expect = 1.280e-25
Identity = 88/249 (35.34%), Postives = 126/249 (50.60%), Query Frame = 1
Query:    1 SVVFSG-QDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVVF G   I   +E +PYP  H+DS SA  A  E  AL +   GV G   +LTC +R + ++G G +  L+P L S AR AG  K I+GDGNNV DF Y  NVAHA + A + L                        +FVT+ EP+ + +F  R+L GLGY  P     A + +  A ++    R+      P     P+LT  R+     ++ FD S A+  LGY+P+ S E+G+  T+++   +R
Sbjct:  131 SVVFDGFHGIFNGNESLPYPPNHIDSYSATKAEGE--ALVIKANGVNG---LLTCCIRPSSIFGPG-DRLLVPSLVSAAR-AGKSKFIIGDGNNVYDFTYVENVAHAHICAERALASSGEVAEKAAGQA----------YFVTNMEPIKFWEFISRILEGLGYQRPKIKIPASVIMPIAHLVELTYRLF----GPYGMKVPQLTPSRVRLLSCSRSFDCSKAKDQLGYSPIVSLEDGIQKTIESYSHMR 358          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: UPI00201E8481 (sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating-like n=3 Tax=Haliotis TaxID=6452 RepID=UPI00201E8481)

HSP 1 Score: 112 bits (280), Expect = 1.350e-25
Identity = 77/248 (31.05%), Postives = 125/248 (50.40%), Query Frame = 1
Query:    1 SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVV+ G+DIK   ED+PY A+ +D  +    + EK  L  +G       ++ T ++R   ++G   +  L+P     ARR G  K I+GDG NVVDF Y GNV H  +LAA+ L+  SA                   + +T+DEP+ +  F  R+L+GLGY  P    +  +      ++A +L+    ++ PV++I+P  T  R++  G    +    A+  + Y P+ S +EG+ +T+     LR
Sbjct:  117 SVVYEGKDIKNGREDLPYAAKPIDYYTETKILQEKEVLQANGA------DLYTVAIRPHGIFGP-RDLQLVPTTVDMARR-GKSKFIIGDGKNVVDFTYVGNVVHGHILAAESLKEGSAVCGKA--------------YHITNDEPIFFWTFLTRILTGLGYDAP----KYNIPFMLVYLIALVLQFFCQLLKPVLEIKPTFTPMRVSLAGTHHFYSCDRAKTDMAYKPVVSLDEGIKLTVDGYPHLR 338          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A7J7DPZ6_TRIWF (Reticulon-like protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DPZ6_TRIWF)

HSP 1 Score: 114 bits (286), Expect = 1.660e-25
Identity = 93/256 (36.33%), Postives = 128/256 (50.00%), Query Frame = 1
Query:    1 SVVFSG-QDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIR-------PELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVVF G   I   +E +PYPA+H+DS SA     EK  L +   G  G   +LTC +R + ++G G ++  +P L S AR AG  K I+GDGNNV DF Y  NVAHA + A + L  +                     +FVT+ EP+ + +F   VL GLGY  P           +  I AF +  +A VV  + ++        P+LT  RI     ++ FD S AR+ LGY P+ S +EGL  TL+    LR
Sbjct:  131 SVVFDGIHGIINGNESLPYPAKHIDSYSATKTEGEK--LVIDANGANG---LLTCCIRPSSIFGPG-DKLFVPSLVSAAR-AGKAKFIIGDGNNVYDFTYVENVAHAHICAERALASEGQVSKNAAGEP----------YFVTNMEPIKFWEFTSLVLEGLGYERP-----------RIKIPAFAVMPIAHVVEWMYKLFGRYGMKVPQLTPSRIRLLSCSRSFDCSKARERLGYTPIVSLKEGLKRTLETYPHLR 358          
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Match: A0A2Z7B3J7_9LAMI (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3J7_9LAMI)

HSP 1 Score: 113 bits (283), Expect = 2.930e-25
Identity = 88/249 (35.34%), Postives = 130/249 (52.21%), Query Frame = 1
Query:    1 SVVFSGQD-IKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGNMLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYAGNVAHAVVLAAQQLRLQSAXXXXXXXXXXXXXXXXXXXFFVTDDEPVPYGDFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRPELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLR 744
            SVVF G + I   +E IPYPA+H DS S+  A  E  AL +   G  G   +LTC +R + ++G G ++ L+P L   AR AG  K I+GDGNN+ DF Y  NVAHA + A + L  +                     +F+T+ EP+ + +F   +L GLGY  P     A + +  A+++  + ++LA    P     P+LT  RI    R++ FD S A   LGY P+ + +EGL  T+++   LR
Sbjct:  132 SVVFDGVNGIINGNESIPYPAKHNDSYSSTKAEGE--ALVIKANGSNG---LLTCCIRPSSIFGPG-DKLLVPSLVDAAR-AGKSKFIIGDGNNMYDFTYVENVAHAHICAERALASEQPVSEKAAGQA----------YFITNMEPIKFWEFMSLLLEGLGYERPKIKIPAAVMMPIANLVELIYKLLA----PYGMKVPQLTPSRIRLLSRSRTFDCSKANDNLGYTPIVTLQEGLGRTIESYSHLR 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9039.16877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB0_ECTSI3.970e-6658.46NAD dependent epimerase/dehydratase, putative (Par... [more]
A0A6H5K6C5_9PHAE5.080e-6558.08Cytochrome b5 heme-binding domain-containing prote... [more]
A0A836CIL1_9STRA4.380e-3138.823-beta hydroxysteroid dehydrogenase/isomerase fami... [more]
A0A1W0WSJ5_HYPDU4.490e-2934.92Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
UPI00033432F01.700e-2832.66sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
NSDHL_MOUSE1.720e-2834.27Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A6P5XQL7_DURZI1.280e-2535.343beta-hydroxysteroid- dehydrogenase/decarboxylase-... [more]
UPI00201E84811.350e-2531.05sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A7J7DPZ6_TRIWF1.660e-2536.33Reticulon-like protein n=1 Tax=Tripterygium wilfor... [more]
A0A2Z7B3J7_9LAMI2.930e-2535.343beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9039contigH-paniculata_contig9039:3366..4827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue3.1e-56
Seed eggNOG ortholog2880.D8LGB0
Preferred nameERG26
KEGG rclassRC01163
KEGG koko:K07748
KEGG ReactionR07494
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
GOsGO:0000252,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0055114,GO:0071704,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
EC1.1.1.170
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size759
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.3841705-CDS-H-paniculata_contig9039:3365..34221622931127.3841705-CDS-H-paniculata_contig9039:3365..3422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9039 3366..3422 -
1691481602.635625-CDS-H-paniculata_contig9039:3365..34221691481602.635625-CDS-H-paniculata_contig9039:3365..3422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9039 3366..3422 -
1622931127.3993044-CDS-H-paniculata_contig9039:4125..48271622931127.3993044-CDS-H-paniculata_contig9039:4125..4827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9039 4126..4827 -
1691481602.649874-CDS-H-paniculata_contig9039:4125..48271691481602.649874-CDS-H-paniculata_contig9039:4125..4827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9039 4126..4827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9039.16877.1prot_H-paniculata_contig9039.16877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9039 3366..4827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9039.16877.1

>prot_H-paniculata_contig9039.16877.1 ID=prot_H-paniculata_contig9039.16877.1|Name=mRNA_H-paniculata_contig9039.16877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
SVVFSGQDIKASSEDIPYPARHVDSVSAATAVAEKAALAVSGTGVGGPGN
MLTCSVRAAVVYGSGSEEHLIPGLASRARRAGFPKAIVGDGNNVVDFVYA
GNVAHAVVLAAQQLRLQSAAASEGGNDGSGAAAAGGRAFFVTDDEPVPYG
DFAGRVLSGLGYAVPAGASRAGMSLTKASILAFLLRVLAMVVSPVVQIRP
ELTARRIAEEGRTQRFDMSNARKCLGYAPLWSQEEGLNITLQASKSLRNP
QAK
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mRNA from alignment at H-paniculata_contig9039:3366..4827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9039.16877.1 ID=mRNA_H-paniculata_contig9039.16877.1|Name=mRNA_H-paniculata_contig9039.16877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1462bp|location=Sequence derived from alignment at H-paniculata_contig9039:3366..4827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGTAGTCTTCTCAGGCCAAGATATTAAGGCGTCTTCCGAGGACATTCC ATACCCCGCACGGCACGTCGACTCTGTCTCGGCTGCCACCGCGGTCGCTG AAAAGGCTGCGCTGGCCGTTAGCGGCACGGGTGTCGGCGGCCCGGGCAAT ATGCTCACGTGCAGCGTGCGCGCCGCCGTGGTTTACGGTTCGGGATCGGA AGAACATCTCATCCCGGGACTCGCGTCGCGCGCCCGACGCGCGGGATTTC CCAAGGCCATCGTCGGAGACGGCAACAATGTTGTAGATTTCGTGTATGCC GGGAACGTCGCGCACGCGGTCGTCCTGGCGGCGCAGCAGCTACGATTGCA GTCCGCTGCGGCATCCGAAGGAGGTAACGACGGCTCCGGTGCCGCAGCTG CCGGCGGTCGAGCGTTCTTTGTGACGGACGATGAGCCGGTACCGTATGGA GATTTCGCCGGCCGTGTGCTGTCGGGGCTGGGGTACGCGGTGCCCGCCGG GGCCTCCAGGGCGGGAATGTCACTGACGAAGGCTTCAATCCTGGCCTTTT TGCTGCGTGTTTTGGCGATGGTTGTGTCGCCGGTAGTACAGATTCGACCC GAGCTCACGGCTAGGCGGATTGCAGAGGAAGGGAGGACGCAGCGTTTTGA CATGTCGAATGCTAGGAAATGTCTGGGATACGCACCGCTGTGGTCTCAGG AGGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGTGCCC TGCTGTGCTTTTAAGAGCCGTGTAATAAGTTGAGAGTATCGTTGGTCCAC CTAGTGGTCTGCCGTTTGTGTTGGTAGATGTCATGGCCGGCGTTGTGTAC CTTACAGAGTTTTGAACTGTATCATTGCACTGACGGTGGAATTGGTTGCT TTATGTCGAAATTAATCAGTCTGCTCCCACGAAGTTTCAACCGAATGTAG GGCTGCCCTATACCTATTGCGGGGAGTGCGACTTCTATATGCCGACCACC CGGGTGAAGTTATTATACTAGGTGTATAAAGCTCCACTAACTTTGGTGAG CAGGTTGACCTGTGAACAAGGCTTGGTAGATAAACGGGTTATTTTTTTTT CTGTCTGTAATTCCCATCATGTCCACTTCACGTTCAGTACACATGCAAGT AATACCATGATACCTCGTTGTGAAAGTAGTAGCTCATGTCGTGCTTGTTC GAAGGGATGTGAGAAGTCCTGGAATTTGGTCATATTTAGTTGTTGACCCC CCCTCCCCCATAACCCTCCGCTCTCCGCTCCGCCCCGGCCACACCCACGA CCTTTGTTGTCGTGCGACACGACACGTGTTATTGTACGATCCACCTCCGA ATGTGAACACAACGGTTCACGGAAAAACAACAACGGATAAATCTTGCGGA AACAGGAAGGATTGAACATCACGCTGCAAGCATCGAAATCCCTCCGAAAT CCGCAGGCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9039:3366..4827-

>mRNA_H-paniculata_contig9039.16877.1 ID=mRNA_H-paniculata_contig9039.16877.1|Name=mRNA_H-paniculata_contig9039.16877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig9039:3366..4827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGTAGTCTTCTCAGGCCAAGATATTAAGGCGTCTTCCGAGGACATTCC
ATACCCCGCACGGCACGTCGACTCTGTCTCGGCTGCCACCGCGGTCGCTG
AAAAGGCTGCGCTGGCCGTTAGCGGCACGGGTGTCGGCGGCCCGGGCAAT
ATGCTCACGTGCAGCGTGCGCGCCGCCGTGGTTTACGGTTCGGGATCGGA
AGAACATCTCATCCCGGGACTCGCGTCGCGCGCCCGACGCGCGGGATTTC
CCAAGGCCATCGTCGGAGACGGCAACAATGTTGTAGATTTCGTGTATGCC
GGGAACGTCGCGCACGCGGTCGTCCTGGCGGCGCAGCAGCTACGATTGCA
GTCCGCTGCGGCATCCGAAGGAGGTAACGACGGCTCCGGTGCCGCAGCTG
CCGGCGGTCGAGCGTTCTTTGTGACGGACGATGAGCCGGTACCGTATGGA
GATTTCGCCGGCCGTGTGCTGTCGGGGCTGGGGTACGCGGTGCCCGCCGG
GGCCTCCAGGGCGGGAATGTCACTGACGAAGGCTTCAATCCTGGCCTTTT
TGCTGCGTGTTTTGGCGATGGTTGTGTCGCCGGTAGTACAGATTCGACCC
GAGCTCACGGCTAGGCGGATTGCAGAGGAAGGGAGGACGCAGCGTTTTGA
CATGTCGAATGCTAGGAAATGTCTGGGATACGCACCGCTGTGGTCTCAGG
AGAGTGTAGTCTTCTCAGGCCAAGATATTAAGGCGTCTTCCGAGGACATT
CCATACCCCGCACGGCACGTCGACTCTGTCTCGGCTGCCACCGCGGTCGC
TGAAAAGGCTGCGCTGGCCGTTAGCGGCACGGGTGTCGGCGGCCCGGGCA
ATATGCTCACGTGCAGCGTGCGCGCCGCCGTGGTTTACGGTTCGGGATCG
GAAGAACATCTCATCCCGGGACTCGCGTCGCGCGCCCGACGCGCGGGATT
TCCCAAGGCCATCGTCGGAGACGGCAACAATGTTGTAGATTTCGTGTATG
CCGGGAACGTCGCGCACGCGGTCGTCCTGGCGGCGCAGCAGCTACGATTG
CAGTCCGCTGCGGCATCCGAAGGAGGTAACGACGGCTCCGGTGCCGCAGC
TGCCGGCGGTCGAGCGTTCTTTGTGACGGACGATGAGCCGGTACCGTATG
GAGATTTCGCCGGCCGTGTGCTGTCGGGGCTGGGGTACGCGGTGCCCGCC
GGGGCCTCCAGGGCGGGAATGTCACTGACGAAGGCTTCAATCCTGGCCTT
TTTGCTGCGTGTTTTGGCGATGGTTGTGTCGCCGGTAGTACAGATTCGAC
CCGAGCTCACGGCTAGGCGGATTGCAGAGGAAGGGAGGACGCAGCGTTTT
GACATGTCGAATGCTAGGAAATGTCTGGGATACGCACCGCTGTGGTCTCA
GGAGGAAGGATTGAACATCACGCTGCAAGCATCGAAATCCCTCCGAAATC
CGCAGGCGAAGGAAGGATTGAACATCACGCTGCAAGCATCGAAATCCCTC
CGAAATCCGCAGGCGAAG
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