mRNA_H-paniculata_contig9032.16874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9032.16874.1
Unique NamemRNA_H-paniculata_contig9032.16874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9032.16874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9032contigH-paniculata_contig9032:6636..7806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size1144
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9032.16874.1prot_H-paniculata_contig9032.16874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9032 7130..7780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.930455-UTR-H-paniculata_contig9032:6635..71291622931126.930455-UTR-H-paniculata_contig9032:6635..7129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9032 6636..7129 -
1691481602.4193614-UTR-H-paniculata_contig9032:6635..71291691481602.4193614-UTR-H-paniculata_contig9032:6635..7129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9032 6636..7129 -
1622931126.9742935-UTR-H-paniculata_contig9032:7780..78061622931126.9742935-UTR-H-paniculata_contig9032:7780..7806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9032 7781..7806 -
1691481602.4550304-UTR-H-paniculata_contig9032:7780..78061691481602.4550304-UTR-H-paniculata_contig9032:7780..7806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9032 7781..7806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.9441466-CDS-H-paniculata_contig9032:7129..73231622931126.9441466-CDS-H-paniculata_contig9032:7129..7323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9032 7130..7323 -
1691481602.4317203-CDS-H-paniculata_contig9032:7129..73231691481602.4317203-CDS-H-paniculata_contig9032:7129..7323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9032 7130..7323 -
1622931126.960641-CDS-H-paniculata_contig9032:7350..77801622931126.960641-CDS-H-paniculata_contig9032:7350..7780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9032 7351..7780 -
1691481602.442324-CDS-H-paniculata_contig9032:7350..77801691481602.442324-CDS-H-paniculata_contig9032:7350..7780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9032 7351..7780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9032.16874.1

>prot_H-paniculata_contig9032.16874.1 ID=prot_H-paniculata_contig9032.16874.1|Name=mRNA_H-paniculata_contig9032.16874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MQRLLRRSSALLPHSLAGAAAVPVTSVSLSFLFSAKDPAATTSLRAGSTI
SLALAVAGSPTITTIAAVAAPAGPRCSVVDGSSRGGNDDERAGSGLTDGH
TSAEAVAAAFSGDGVRVRSSSPSEVVVVVVVGVLLVVVVAVVSTAAAAAA
AAAAAVVVPVSVVVHCALLVRLLLRLPSSVTAEDDGTSTAGEGAGMIKQF
RFGWTRR*
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mRNA from alignment at H-paniculata_contig9032:6636..7806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9032.16874.1 ID=mRNA_H-paniculata_contig9032.16874.1|Name=mRNA_H-paniculata_contig9032.16874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-paniculata_contig9032:6636..7806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTTCCTCCTCCCCCGTGCACTCGATGCAAAGACTGCTACGGCGTTCC
TCGGCGTTACTACCGCACTCGTTGGCAGGGGCGGCAGCAGTGCCAGTGAC
ATCGGTATCATTGTCATTTCTGTTTTCTGCGAAGGATCCCGCCGCCACGA
CGAGCTTAAGGGCAGGGTCGACGATATCGTTGGCGTTGGCGGTGGCAGGA
TCGCCGACCATAACAACCATAGCCGCGGTAGCAGCGCCAGCGGGGCCCCG
CTGCTCTGTGGTCGATGGCTCTTCTCGGGGGGGTAACGATGACGAACGTG
CTGGTTCTGGCTTAACAGACGGCCACACCTCAGCTGAGGCCGTCGCTGCG
GCATTCTCGGGGGACGGAGTGAGAGTACGTTCATCATCCCCAAGCGAAGT
CGTCGTTGTGGTAGTCGTCGGGGTCCTTCTTGTTGTCGTCGTTGCTGTTG
TCTCTAGTTTACAATGGCGTATAGAAAAAGCAGCGGCAGCAGCAGCAGCG
GCAGCAGCAGCAGCAGCTGTGGTTGTGCCGGTGTCGGTGGTGGTACACTG
CGCACTACTAGTACGACTGTTACTGCGACTACCGAGCAGTGTGACCGCTG
AAGATGATGGTACCTCAACCGCGGGGGAAGGCGCGGGTATGATCAAGCAA
TTCAGGTTTGGGTGGACTCGCCGTTGATCGTCGTCATCGTCACGCCTGCT
GCGATCATGAGAGTCTGCGAGTGAATAACCCATGCCTTGAGAATGAGTGT
GCGATGCGCGGGCAGCGACCATCAACGCCCTAGGTGTGTCATCTCCTTTC
ACAGCTCGTCGATGGTCTTCCTCACTGCTGCCTTCATCCCGCTTGGTGCC
TACCCCTGGGGGTAGAGACACGCTGCTTCTACCTCGTTGAAATTCTTTGG
GGAAGATGCCTGCTGGTGTCGTCTCACAGGCATTTGAGGCATGGTTGGAA
AGGTTGATGTTAGATGGCCTGAACTGAAAAGTCTCCGCCATTCCTATTAG
TTCTTGTGATTGAGATTTGAATGTCTTCCGCTCTGGCCATCCACCCACAA
GGGCATTGACCTTTGAAGCTTCGCTTTCGATAAAAGATGAACACGTGTGG
GTAACACTGGTGAGCTCGTGAGTGTCTGCCACCTGGGTGAAAAGGTTAGA
CCACTCTTGCTCTACTTTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig9032:6636..7806-

>mRNA_H-paniculata_contig9032.16874.1 ID=mRNA_H-paniculata_contig9032.16874.1|Name=mRNA_H-paniculata_contig9032.16874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig9032:6636..7806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAGACTGCTACGGCGTTCCTCGGCGTTACTACCGCACTCGTTGGC
AGGGGCGGCAGCAGTGCCAGTGACATCGGTATCATTGTCATTTCTGTTTT
CTGCGAAGGATCCCGCCGCCACGACGAGCTTAAGGGCAGGGTCGACGATA
TCGTTGGCGTTGGCGGTGGCAGGATCGCCGACCATAACAACCATAGCCGC
GGTAGCAGCGCCAGCGGGGCCCCGCTGCTCTGTGGTCGATGGCTCTTCTC
GGGGGGGTAACGATGACGAACGTGCTGGTTCTGGCTTAACAGACGGCCAC
ACCTCAGCTGAGGCCGTCGCTGCGGCATTCTCGGGGGACGGAGTGAGAGT
ACGTTCATCATCCCCAAGCGAAGTCGTCGTTGTGGTAGTCGTCGGGGTCC
TTCTTGTTGTCGTCGTTGCTGTTGTCTCTAATGCAAAGACTGCTACGGCG
TTCCTCGGCGTTACTACCGCACTCGTTGGCAGGGGCGGCAGCAGTGCCAG
TGACATCGGTATCATTGTCATTTCTGTTTTCTGCGAAGGATCCCGCCGCC
ACGACGAGCTTAAGGGCAGGGTCGACGATATCGTTGGCGTTGGCGGTGGC
AGGATCGCCGACCATAACAACCATAGCCGCGGTAGCAGCGCCAGCGGGGC
CCCGCTGCTCTGTGGTCGATGGCTCTTCTCGGGGGGGTAACGATGACGAA
CGTGCTGGTTCTGGCTTAACAGACGGCCACACCTCAGCTGAGGCCGTCGC
TGCGGCATTCTCGGGGGACGGAGTGAGAGTACGTTCATCATCCCCAAGCG
AAGTCGTCGTTGTGGTAGTCGTCGGGGTCCTTCTTGTTGTCGTCGTTGCT
GTTGTCTCTACGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCTGTGGT
TGTGCCGGTGTCGGTGGTGGTACACTGCGCACTACTAGTACGACTGTTAC
TGCGACTACCGAGCAGTGTGACCGCTGAAGATGATGGTACCTCAACCGCG
GGGGAAGGCGCGGGTATGATCAAGCAATTCAGGTTTGGGTGGACTCGCCG
TTGACGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCTGTGGTTGTGCC
GGTGTCGGTGGTGGTACACTGCGCACTACTAGTACGACTGTTACTGCGAC
TACCGAGCAGTGTGACCGCTGAAGATGATGGTACCTCAACCGCGGGGGAA
GGCGCGGGTATGATCAAGCAATTCAGGTTTGGGTGGACTCGCCGTTGA
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