mRNA_H-paniculata_contig9022.16867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9022.16867.1
Unique NamemRNA_H-paniculata_contig9022.16867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9022.16867.1 vs. uniprot
Match: A0A2D4ZQY1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2D4ZQY1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.720e-9
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:  139 MDTIKEMKFDEVGQLDLFNEGFTRKVKCIGYGPKQGGGMCNPKYKHKPVAYTVEAFAQSFNKGNYILAVNGHALTIKNGVVVDN 390
            M+ +K + FD      LF E  T  + C+ + P       N  Y HK V +TV+ F   ++KG +I+ VN HALTIK+G+V+DN
Sbjct:    1 MNKLKSVTFDLFSDT-LFPETKTYNLVCV-HEP------INADYTHKKVKFTVKTFCAKYSKGTFIVLVNKHALTIKDGIVIDN 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9022.16867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D4ZQY1_9BACT2.720e-939.29Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9022contigH-paniculata_contig9022:3128..3523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.11504-CDS-H-paniculata_contig9022:3127..35231622931126.11504-CDS-H-paniculata_contig9022:3127..3523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9022 3128..3523 +
1691481602.0262244-CDS-H-paniculata_contig9022:3127..35231691481602.0262244-CDS-H-paniculata_contig9022:3127..3523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9022 3128..3523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9022.16867.1prot_H-paniculata_contig9022.16867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9022 3128..3523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9022.16867.1

>prot_H-paniculata_contig9022.16867.1 ID=prot_H-paniculata_contig9022.16867.1|Name=mRNA_H-paniculata_contig9022.16867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
AKGEKNDCVVRAIVNVCDVNYTQAHKYVEETFNGGKGKGTKAFSGTMDTI
KEMKFDEVGQLDLFNEGFTRKVKCIGYGPKQGGGMCNPKYKHKPVAYTVE
AFAQSFNKGNYILAVNGHALTIKNGVVVDNA*
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mRNA from alignment at H-paniculata_contig9022:3128..3523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9022.16867.1 ID=mRNA_H-paniculata_contig9022.16867.1|Name=mRNA_H-paniculata_contig9022.16867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig9022:3128..3523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAGGGCGAGAAAAACGACTGCGTGGTGAGAGCCATTGTGAATGTTTG
TGACGTGAATTACACTCAAGCACATAAGTATGTTGAGGAAACATTTAACG
GGGGAAAAGGTAAAGGTACAAAGGCATTTTCCGGTACAATGGATACGATT
AAGGAAATGAAGTTTGACGAAGTAGGTCAACTTGATTTGTTTAATGAAGG
CTTTACTAGAAAAGTAAAGTGTATAGGTTACGGACCTAAGCAAGGTGGTG
GTATGTGTAATCCAAAATATAAGCACAAGCCGGTTGCATATACTGTTGAG
GCATTTGCACAATCATTTAATAAAGGTAATTATATTCTTGCGGTTAATGG
ACATGCATTGACGATTAAGAATGGTGTGGTGGTAGATAATGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9022:3128..3523+

>mRNA_H-paniculata_contig9022.16867.1 ID=mRNA_H-paniculata_contig9022.16867.1|Name=mRNA_H-paniculata_contig9022.16867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig9022:3128..3523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAGGGCGAGAAAAACGACTGCGTGGTGAGAGCCATTGTGAATGTTTG
TGACGTGAATTACACTCAAGCACATAAGTATGTTGAGGAAACATTTAACG
GGGGAAAAGGTAAAGGTACAAAGGCATTTTCCGGTACAATGGATACGATT
AAGGAAATGAAGTTTGACGAAGTAGGTCAACTTGATTTGTTTAATGAAGG
CTTTACTAGAAAAGTAAAGTGTATAGGTTACGGACCTAAGCAAGGTGGTG
GTATGTGTAATCCAAAATATAAGCACAAGCCGGTTGCATATACTGTTGAG
GCATTTGCACAATCATTTAATAAAGGTAATTATATTCTTGCGGTTAATGG
ACATGCATTGACGATTAAGAATGGTGTGGTGGTAGATAATGCATAAGCTA
AGGGCGAGAAAAACGACTGCGTGGTGAGAGCCATTGTGAATGTTTGTGAC
GTGAATTACACTCAAGCACATAAGTATGTTGAGGAAACATTTAACGGGGG
AAAAGGTAAAGGTACAAAGGCATTTTCCGGTACAATGGATACGATTAAGG
AAATGAAGTTTGACGAAGTAGGTCAACTTGATTTGTTTAATGAAGGCTTT
ACTAGAAAAGTAAAGTGTATAGGTTACGGACCTAAGCAAGGTGGTGGTAT
GTGTAATCCAAAATATAAGCACAAGCCGGTTGCATATACTGTTGAGGCAT
TTGCACAATCATTTAATAAAGGTAATTATATTCTTGCGGTTAATGGACAT
GCATTGACGATTAAGAATGGTGTGGTGGTAGATAATGCATAA
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