mRNA_H-paniculata_contig9021.16866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9021.16866.1
Unique NamemRNA_H-paniculata_contig9021.16866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: D7G3R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R1_ECTSI)

HSP 1 Score: 655 bits (1690), Expect = 1.700e-222
Identity = 366/649 (56.39%), Postives = 418/649 (64.41%), Query Frame = 3
Query:  282 STPSLSPSSRFDDDGGLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDS------------QYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPE------------------VRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNT---APVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAA---------PPFWGKGWSEEEVEDELEEWEPWVDVRPLEGLEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            S  S SP     D  GL+VGLNKYSHDS++CI+  RDG  LF  EKERLTR KHDGGD GELV HAL  +GA+L DVRLVVSNNHHHRVAPFE R+PW+V  G +P SYAS +NLIP A AHAELSHHLAHAWSAA LSPFD GLIVVMDGMGE++GAMA+AE                                   +YYNDLRLMRE+ A  +        G G    FQQVPE  +PHEAYREAESAY F PG  GGP  L P+YKRW RERSPPEL+NHGFENMES+GAVYSRVSSHIFGDWNACGKVMGLAP+AS+ S                            G+          D+F + W+AIE L RPN LG                     +  +YA LAS AQ GLEEAA+ FV GLR+RTGE N+CLCGGVALNSVLNGKIARE GF RVFVPPCPGDEG+AVGCA+FG++  + LL +S     +P  K  G   P +  E+E              +  T VE  G   D EG     A          P+WG+GW+E++VEDE+ EWE WVDVR + G+E+VAQAIADG+VVAWFQGRGEFGPRALGSRSLLADPRDP+MPARIN  VKKR
Sbjct:   38 SIDSSSPPVSASDSDGLVVGLNKYSHDSSVCILSYRDGTCLFAGEKERLTRAKHDGGDTGELVSHALRSVGASLEDVRLVVSNNHHHRVAPFEERVPWAVAQGTYPASYASEENLIPGA-AHAELSHHLAHAWSAAALSPFDSGLIVVMDGMGESHGAMARAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERPPPVEYYNDLRLMRELGAGGEMAEGTEVPGDGSPG-FQQVPEELLPHEAYREAESAYQFMPGADGGP-TLVPIYKRWIRERSPPELFNHGFENMESMGAVYSRVSSHIFGDWNACGKVMGLAPYASKSSPPXXXXXXXXXXXXXXXXXXXXXXXXXTGE----------DAFYVDWEAIESLPRPNGLGQEGDGQDEGDDGSGNEDGLHGLGSFYAALASRAQEGLEEAALEFVKGLRDRTGEENVCLCGGVALNSVLNGKIAREAGFRRVFVPPCPGDEGVAVGCASFGWHQRRLLLPSSGDTTLSPTDKKNGD--PTAVCEEE-------------NLTDTPVESGGG-GDLEGRPKVVAGPLGSGELRTPYWGRGWTEDDVEDEIAEWERWVDVRQINGVEEVAQAIADGKVVAWFQGRGEFGPRALGSRSLLADPRDPEMPARINADVKKR 657          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A0G4FRZ2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRZ2_VITBC)

HSP 1 Score: 439 bits (1130), Expect = 2.550e-139
Identity = 274/628 (43.63%), Postives = 349/628 (55.57%), Query Frame = 3
Query:  282 STPSLSPS-SRFDDDGG------LIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPP--------SRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPND-LGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSE--EEVEDELEEWEPWVDVRPL---EGLEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            S PS S S SR     G      LI+GLNKYSHD+A CI+    G  L+G EKERL+R KHDGG+  +LV  AL  + ATL DV +VV +NHH R+APFE R+PW+V  G +PPSY  P N+        E+SHHLAHAWS    +PFD GL+VVMDGMGE+Y  MA + +  E                    Y  DL L+    +++++              F Q P   +  + YREAESAY F+     G P + P++KRWT ERSPPEL+NHGFENMES+GAVYSRVSS IFGDWN CGKVMGLAPWA   S+ +             RL  G+LL +       +++G             FR++WD +E L  P+D LG       +A LA   QR LE AAMT +  L+ERTG  NLCL GGVALNSVLNG+I RE GFDRVF+PP PGDEGIA GCA  G +H  +                + P  A+  ELE ++         +AG  V                  P+ G  ++   E ++  L+E++ W+  +     E + + AQ +ADG+VVAWFQG  E GPRALG RS+LADPR+  M   +N  VK R
Sbjct:   72 SKPSASASISRLSASAGERAKRLLILGLNKYSHDAACCIV-DTSGAHLYGGEKERLSRVKHDGGEVDDLVDQALTSVDATLDDVAMVVQSNHHFRIAPFEDRLPWAVSQGHYPPSYIDPLNIFAGIPKR-EVSHHLAHAWSVITQAPFDEGLVVVMDGMGESYRYMADSHSQAE--------------------YLTDLDLLDSATSEQRSA-------------FIQNPRQLLAGKGYREAESAYLFSRSSAAGGPTVMPLFKRWTEERSPPELFNHGFENMESMGAVYSRVSSQIFGDWNVCGKVMGLAPWAKAGSTGEATDMWKGLLDDGFRLMEGNLLLSK------EEQG------------GFRVNWDLLESL--PHDCLGTDPTFMSFAPLAWRVQRDLENAAMTLIQELKERTGARNLCLVGGVALNSVLNGRICRELGFDRVFIPPFPGDEGIAFGCAMAGLHHFIR----------------KQPAEAARAELETSS---------VAGHPV-----------------TPYSGYDYTADPEGMDAVLDEYKHWIVTQRYTESEIVAETAQLLADGKVVAWFQGGAEMGPRALGHRSILADPRNKTMVDFLNKEVKHR 602          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A0G4FTF1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FTF1_9ALVE)

HSP 1 Score: 425 bits (1093), Expect = 2.870e-134
Identity = 281/626 (44.89%), Postives = 342/626 (54.63%), Query Frame = 3
Query:  312 FDDDGG-LIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQ-ARFQQVPENFVPHEAYREAESAYTFAPGPGG----------GPPV--LTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPPSRLTS---GHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGEN------NLCLCGGVALNSVLNGKIAREG-GFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVDVRPLEGLEQV-----AQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            F   GG L+VGLNKYSHD +ICI   RDG+ LFG EKERLTR KH GGDAGELV HAL  +GA+L DV LVV NNHHHR+APFE+R+PW+V  G++ P++  P NL+  A    E+SHHLAHAW+A   SPFD GL+ V DGMG+A  AM +AEA  E          GS        + +DL L          + VAAG    E+  R +   E +     +REAE+ Y F     G          G  V  L PV+KRWT ER P EL+NHGFE+MESLGA+YSRVSSHIFGDWN CGKVMGLAPWASQW S        LTS   GHL +           GD +D           + W+ +E L      G    R ++A LA   Q  LE  ++ F+   + +T E       NLCL GGVALNSVLNGKI+ E  GF  VFVP  PGDEGIAVGCAAFG +H   L+  S     S+            +E +  N        G+A        +             PF G  +  EE+E  +EE+  W++VR +   E       A  IA+G VVAW QG  E GPRALG RS+LADPR   +   INT VK R
Sbjct:   27 FSRGGGPLVVGLNKYSHDVSICIA-SRDGEFLFGGEKERLTRAKHAGGDAGELVSHALDRVGASLSDVGLVVQNNHHHRIAPFEKRLPWAVSQGLYDPTFLDPHNLLGHAPR-VEVSHHLAHAWAAFAQSPFDDGLVFVSDGMGDARSAMQRAEAGEE----------GS--------FVHDLSL----------SPVAAGWDMTERPGRMRDPSEGW---REFREAETLYVFRKEGAGRYQGKAKSLLGDAVSPLVPVFKRWTEERGPSELFNHGFEHMESLGALYSRVSSHIFGDWNVCGKVMGLAPWASQWRS-------ELTSEERGHLESGRGGGRLF--WGDLEDS-------QLEIDWEFLESLPFGAGWGKRGSRAFHACLAEQVQSDLENVSLAFLK-RQAQTSEGKWGVPPNLCLVGGVALNSVLNGKISSEATGFKEVFVPATPGDEGIAVGCAAFGVHHFSSLVDGSGRQKESR-----------RKEAQGMN--------GVASXXXXXXXRRKTNPFRWGRPLVPFGGCAYDREEIEGAVEEFRNWIEVRRVHSSEDALAEAAASRIAEGEVVAWCQGGAEMGPRALGHRSILADPRRGYLLDFINTKVKSR 583          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A7R9U4N9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N9_9STRA)

HSP 1 Score: 420 bits (1080), Expect = 1.620e-133
Identity = 252/611 (41.24%), Postives = 321/611 (52.54%), Query Frame = 3
Query:  324 GGLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHA-ELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQW---SSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDL------GDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRER--TGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWV------DVRPLEGLEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            G L++GLNKYSHD+++C++      VL+   KERL+R KHDGG  GE V  AL  +GA + DV LVV NNHHHR+APFERR+PW+V+ G        P NL+        ELSHHLAHAWSAA L PFD GL++VMDGMG++       +  +             D + DD+        + + DA                  F+QVP+ F P   YREAE+ Y F    G GP  L  ++KRWT E+SP ELYN+GFENMES+GA+YSRVSS  FGDWNACGKVMGL PWA  W   SS D        SG LL                          F++HWD +  L   ND       GD   + +YA +A   Q  LE   M  V  L+     GE NLC  GGVALNSVLNG+I +E  F RV++PP PGD+G++VGCA +G + L+           S+P G    +                                            PF G  ++ +++ + + E+ PWV      DV   E +E VA AIA+G+VV WFQGRGE GPRALG+RS+LADPRDP+M   +N  VKKR
Sbjct:   11 GPLVLGLNKYSHDASVCVVDSDSDAVLYAGAKERLSRRKHDGGGVGEAVDVALSSIGAKIEDVALVVQNNHHHRIAPFERRLPWAVKQGYESADGLHPLNLLEHGHLEKLELSHHLAHAWSAAALCPFDHGLVLVMDGMGDSQRNFKTRDERV-------------DFMTDDA--------LPKADA------------------FKQVPDTFAPFRDYREAETVYRFDDR-GPGPMRLELLFKRWTEEKSPSELYNYGFENMESIGAIYSRVSSQTFGDWNACGKVMGLGPWAPTWRKHSSRDERSARSFMSGSLLEG-----------------------LFKVHWDELNKLEYSNDFKAALREGDDLRKLFYAEVAEAVQDDLEGVCMAAVRDLKNTHGPGEANLCFAGGVALNSVLNGRIQKESQFQRVYIPPFPGDDGVSVGCALYGASVLRGE---------SRPSGRERTVFE------------------------------------------PFQGPKYTADDILEAISEYAPWVEVVASYDVEDQEYIEFVADAIANGKVVGWFQGRGEVGPRALGARSILADPRDPEMADFLNVKVKKR 507          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A3M2ADF0_9BACT (PqqD family peptide modification chaperone n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2ADF0_9BACT)

HSP 1 Score: 395 bits (1016), Expect = 1.150e-124
Identity = 245/593 (41.32%), Postives = 306/593 (51.60%), Query Frame = 3
Query:  327 GLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVDVRPLEGLEQVAQAIAD-GRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            G ++GLN+Y+H +A C++    G+ LF   KERL+R KHDGGD  +LV HAL   G    ++  VV+NNH  R+  FERR+PWSV +G + PS+  P+NL+P  E   ELSHHLAHAWS   L+PF  GLI+VMDG+G  +  +               H  G        +Y++D  L R  D                   F+QVP      E +REAE+ Y F          L  V+KRWTRER+P  L+N+GFENMESLGAVYSRV+SH+FG WN CGKVMGLAPWA +W     P P  L  G L                         +   + W  +E    PN+  D   RP YA LA+  Q GLEE  + F+  LRERTGE NLCL GGVALNS LNG+IARE GFDRVFVPP PGD+GIAVGCA +G + L+        AP   P    +     E+E+  A A   D                                                 WV+    +     A A  D G VVAW++G  EFGPRALG+RS+LADPR P+M  RIN  +KKR
Sbjct:    4 GPVLGLNQYTHSAAACLL-DTGGRPLFAGAKERLSRRKHDGGDTADLVGHALERCGLEPAELAAVVANNHLFRIDDFERRLPWSVALGHYRPSFLRPENLLPGIEKW-ELSHHLAHAWSVLPLAPFARGLILVMDGIGSTWREL---------------HRPGE-------RYHSDAGLPRAGD-------------------FRQVPAEPERCEGWREAETVYRF------DGLELELVFKRWTRERTPVLLHNYGFENMESLGAVYSRVASHVFGHWNDCGKVMGLAPWAERWDPDGRPRP--LLRGPL-------------------------EELAIDWSRLESEPHPNEWEDEARRPAYARLAADLQLGLEEVVLDFLRRLRERTGERNLCLAGGVALNSTLNGRIARECGFDRVFVPPWPGDDGIAVGCALWGRHRLRP-----EAAPARSPWFPLLGAKPEEEEIAAALAEAAD-------------------------------------------------WVEATHCDQPAAAAAAALDAGEVVAWYRGPAEFGPRALGNRSILADPRRPEMVDRINAAIKKR 466          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A7S3AA34_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AA34_9RHOD)

HSP 1 Score: 394 bits (1012), Expect = 4.230e-123
Identity = 240/602 (39.87%), Postives = 315/602 (52.33%), Query Frame = 3
Query:  330 LIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQW-----SSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWE--PWVDVRPLEG----LEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            +++GLN+YSHD+++ +     G++LF   KER+TR KHD G+ GELV HAL  LG    DV+LVV+NNHH RV PFE+R+P++V +G +PPS    Q+ I       E+SHHLAHAWS   L PFD GLIVVMDGMGE        + T E                    Y  D +L +  D                   F + P    P   YREAES Y F          L+ VYKRWT E SPPELYNHGFENMESLGA+YSRVSSHIFGDWN CGKVMGLAP+A        SS D      L +G L+                           ++ ++A++ L   ND  + E R +Y  LA   Q+ +E+  ++F+  LR RTG  NLC  GGVALNS +NG I RE GF++V++PP PGD+GI+VGCA +G                            SE  L  ++ N                          S  + P+ GK ++E +++  LE+ E  P++ V   E     LE+  +A+ DGR++ W+QG  E GPRALG+RSLLADPRDP    R+N  +K+R
Sbjct:   63 IVLGLNEYSHDASVAVADASTGRLLFAASKERITRRKHDAGETGELVAHALESLGLEAEDVKLVVTNNHHFRVLPFEKRLPFAVGIGAYPPSVL--QDPIRGKVEKMEISHHLAHAWSVLPLCPFDEGLIVVMDGMGEHIREFTSRKRTGE--------------------YVCDYQLPKLDD-------------------FMEFPAEKEPFVGYREAESVYLF------DKMNLSRVYKRWTAENSPPELYNHGFENMESLGALYSRVSSHIFGDWNTCGKVMGLAPYADGEIADLDSSFDEN--RELFTGQLITG-----------------------DIQIDFEALDQLSAVNDWSNEENRGFYIHLAHKVQQEVEDEVLSFLKELRVRTGAKNLCFAGGVALNSTINGAIIREAGFEKVYIPPYPGDDGISVGCAMYG------------------------AFRGSEVALSSSSGN--------------------------SATSSPYLGKLYNELDIQYALEDPEIAPYIVVEEAENEDVILEKAVRALEDGRILGWYQGPSEHGPRALGNRSLLADPRDPANVTRLNRDIKRR 542          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A7S3AC86_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC86_9RHOD)

HSP 1 Score: 386 bits (992), Expect = 1.240e-122
Identity = 236/589 (40.07%), Postives = 308/589 (52.29%), Query Frame = 3
Query:  330 LIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQW-----SSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWE--PWVDVRPLEG----LEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDP 2063
            +++GLN+YSHD+++ +     G++LF   KER+TR KHD G+ GELV HAL  LG    DV+LVV+NNHH RV PFE+R+P++V +G +PPS    Q+ I       E+SHHLAHAWS   L PFD GLIVVMDGMGE        + T E                    Y  D +L +  D                   F + P    P   YREAES Y F          L+ VYKRWT E SPPELYNHGFENMESLGA+YSRVSSHIFGDWN CGKVMGLAP+A        SS D      L +G L+                           ++ ++A++ L   ND  + E R +Y  LA   Q+ +E+  ++F+  LR RTG  NLC  GGVALNS +NG I RE GF++V++PP PGD+GI+VGCA +G                            SE  L  ++ N                          S  + P+ GK ++E +++  LE+ E  P++ V   E     LE+  +A+ DGR++ W+QG  E GPRALG+RSLLADPRDP
Sbjct:   63 IVLGLNEYSHDASVAVADASTGRLLFAASKERITRRKHDAGETGELVAHALESLGLEAEDVKLVVTNNHHFRVLPFEKRLPFAVGIGAYPPSVL--QDPIRGKVEKMEISHHLAHAWSVLPLCPFDEGLIVVMDGMGEHIREFTSRKRTGE--------------------YVCDYQLPKLDD-------------------FMEFPAEKEPFVGYREAESVYLF------DKMNLSRVYKRWTAENSPPELYNHGFENMESLGALYSRVSSHIFGDWNTCGKVMGLAPYADGEIADLDSSFDEN--RELFTGQLITG-----------------------DIQIDFEALDQLSAVNDWSNEENRGFYIHLAHKVQQEVEDEVLSFLKELRVRTGAKNLCFAGGVALNSTINGAIIREAGFEKVYIPPYPGDDGISVGCAMYG------------------------AFRGSEVALSSSSGN--------------------------SATSSPYLGKLYNELDIQYALEDPEIAPYIVVEEAENEDVILEKAVRALEDGRILGWYQGPSEHGPRALGNRSLLADPRDP 529          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A2A4PGL3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4PGL3_9BACT)

HSP 1 Score: 387 bits (993), Expect = 2.070e-121
Identity = 231/594 (38.89%), Postives = 309/594 (52.02%), Query Frame = 3
Query:  324 GGLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVDVRPLEGL-EQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            GGL +GLN+Y+H ++ C++ G +G+ LF   KER+TR K DGGD  ELV+H L    A++ D+RLVV+NNH  R+  FE  + W+  +  + PSY    NL+P  E   ELSHHLAHAWS   +  FD GLIVVMDG+G  + A+               H  G +       Y++D  L       E   A     G G                 +RE ESA+ F          L  V+KRW  E +P  LYN+GFENMESLGAVYSRVSSHIFGDWNACGKVMG+APWA QW++   P    +  G L                             ++W+ +    +    G+ + RP  A LA+  QR LE+ A+ F+ GLRE++GE N+CL GGVALN  +NG+IARE GF+ VF+PP PGDEG+A+GCA FG+++L        T           P +                                           PF G  ++E++   ++ E+E WV+    + +    A+A++ G VVAWFQGR EFG RALG+RS+LADPRD  M  RIN+ +KKR
Sbjct:    3 GGLTIGLNQYTHSASACLLDG-EGEPLFALSKERITRKKFDGGDTAELVRHLLEQCNASISDLRLVVANNHLFRIDEFESTLDWAQALDQYRPSYLDRNNLLPGIEK-LELSHHLAHAWSVLPICQFDRGLIVVMDGIGTTFEAL---------------HRPGEN-------YFSDAGLASAEYYAESPPAEHRNNGKG-----------------WREGESAFQFEGL------ELERVFKRWICEHTPTLLYNYGFENMESLGAVYSRVSSHIFGDWNACGKVMGMAPWAPQWAAQQAP--DWVMRGPLA-------------------------ELEVNWERLRSAPQAXQWGEEDARPMQAALAADVQRDLEQIALDFLRGLREQSGEKNICLVGGVALNCAMNGRIAREAGFENVFIPPWPGDEGLAIGCALFGHHYLHPRAQARRT-----------PFT-------------------------------------------PFLGTEFTEQDQLADINEFEAWVECYLSDDVVAATAEALSKGEVVAWFQGRAEFGQRALGNRSILADPRDGGMIERINSAIKKR 468          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A2E7RG53_9BACT (Carbamoyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E7RG53_9BACT)

HSP 1 Score: 382 bits (980), Expect = 1.950e-119
Identity = 227/598 (37.96%), Postives = 311/598 (52.01%), Query Frame = 3
Query:  324 GGLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPEN--FVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPP-PPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVD--VRPLEGLEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            G L +GLN+Y+H ++ C++   +G++L    KERLTR KHDGGD  ELV+H L     +L D+ LVV+NNH  RV  FE  + W+  +  + PSY    NL+P  E H ELSHHLAHAWSA    PF+ GLIVVMDGMG           T E A R+ ++            +++DL L +  +                   F++VP++  F   + +RE ES Y F          L  ++KRW  E +P  LYN+GFENMESLGAVYSR+SSHIFGDWN+CGKVMG+APWA +W+       P  +  G L                         +   ++W+ +     PN+  D +  P YA L+S  QR LE+  + F+ GL+E+TGE NLCL GGVALN  LNG++A E GF+ VFVPP PGD+G+AVGCA +GY+               KP                                                 A P+ G  + ++E+ + L  ++ WV+  + P +    +A  +A+G+ VA F+G  EFGPRALG+RS+LADPR   M  RIN+ +KKR
Sbjct:    3 GELTLGLNQYTHSASACLLNA-EGEILIALSKERLTRKKHDGGDVAELVRHTLEQCNVSLNDIGLVVANNHLFRVDAFESTLHWAQALNQYRPSYLDQHNLLPRIEKH-ELSHHLAHAWSAFPFCPFEKGLIVVMDGMGN----------TKEEAERTGDY------------FHSDLSLPKSEN-------------------FKEVPDSNAFSNGKGWREGESVYRFEGHD------LELLFKRWICENTPTLLYNYGFENMESLGAVYSRISSHIFGDWNSCGKVMGMAPWAEKWNQGKKENQPDWILRGPL-------------------------EKLEVNWERLRSTAHPNEWSDSQNHPLYAQLSSDLQRDLEKTVLDFLKGLQEKTGEKNLCLVGGVALNCALNGRLAMEAGFENVFVPPWPGDDGLAVGCALYGYSQKNAF---------QKPT------------------------------------------------ASPYLGTQFDDQEILESLSRYQSWVECYLSP-DATSAIADELAEGKTVATFRGPAEFGPRALGNRSILADPRVEDMVDRINSAIKKR 468          
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Match: A0A353FJN8_9BACT (Carbamoyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A353FJN8_9BACT)

HSP 1 Score: 379 bits (974), Expect = 1.430e-118
Identity = 225/592 (38.01%), Postives = 302/592 (51.01%), Query Frame = 3
Query:  330 LIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDAGELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSYASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAMAKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAAGRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRWTRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQWSSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWDAIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENNLCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQQLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEERGKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVDVRPL-EGLEQVAQAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR 2102
            L++GLN+Y+H +A C++    G+V+    KERLTR KHDGGD  ELV   +   G    D+ +VV+NNH  R+  F   + W      H P++   +NL+ +    +ELSHHLAHAWS    +PF+ GLIVVMDGMG  +  +               HS G +       Y++D+ +                        F++ P +   +  +REAES Y F          L  V+KRW  E++P  L+N+GFENM+SLGAVYSR+SSHIFGDWNACGKVMGLAPW   W+ A+     ++ SG L A      NVD                    W+ ++ L   N   D     +YA LA+  Q  LE+  + F+  LRE+TGE N+CLCGGVALNS LNG+I RE GFD VF+PP PGD+GIA+GCA FG   L       N+ P  K   G                                                P  G+ + E  + + L+E EPW++   + E       A+ADG +V WFQGR EFGPRALG+R +LADPRDP+   R+N+ +KKR
Sbjct:    5 LVLGLNQYTHSAAACLL-DHTGEVVVALAKERLTRKKHDGGDVAELVGAVMETAGINQEDLGMVVANNHLFRIDSFHSTLEWQTAQLQHRPTFTDSRNLLSNVPR-SELSHHLAHAWSVLPWAPFEKGLIVVMDGMGSTWEDL---------------HSPGEN-------YFSDIEIPASQS-------------------FEEYPADRTDYPGWREAESVYAF------NGTQLEKVWKRWIPEKTPVFLHNYGFENMDSLGAVYSRISSHIFGDWNACGKVMGLAPWDDVWNGAENRS-EKVMSGPLEAL-----NVD--------------------WERLKSLPHGNKWADKNNHGFYAKLANEVQSDLEDIVLDFLIRLREKTGERNICLCGGVALNSTLNGRIVREAGFDNVFIPPWPGDDGIAMGCAWFGLEKL-------NSCPPPKASPG------------------------------------------------PLLGRSFDEPVIAEALKEVEPWIETEAIKEPANAAGTALADGEMVGWFQGRSEFGPRALGARCILADPRDPKAAERLNSAIKKR 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9021.16866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3R1_ECTSI1.700e-22256.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4FRZ2_VITBC2.550e-13943.63Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A0G4FTF1_9ALVE2.870e-13444.89Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7R9U4N9_9STRA1.620e-13341.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A3M2ADF0_9BACT1.150e-12441.32PqqD family peptide modification chaperone n=1 Tax... [more]
A0A7S3AA34_9RHOD4.230e-12339.87Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3AC86_9RHOD1.240e-12240.07Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2A4PGL3_9BACT2.070e-12138.89Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E7RG53_9BACT1.950e-11937.96Carbamoyltransferase n=1 Tax=Planctomycetes bacter... [more]
A0A353FJN8_9BACT1.430e-11838.01Carbamoyltransferase n=1 Tax=Planctomycetes bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9021contigH-paniculata_contig9021:3707..9232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score657.9
Seed ortholog evalue5.2e-186
Seed eggNOG ortholog2880.D7G3R1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Carbamoyltransferase C-terminus
EggNOG OGs2RKTV@2759,COG2192@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2105
Cds size2097
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.9681962-UTR-H-paniculata_contig9021:3706..37141622931125.9681962-UTR-H-paniculata_contig9021:3706..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9021 3707..3714 +
1691481601.957801-UTR-H-paniculata_contig9021:3706..37141691481601.957801-UTR-H-paniculata_contig9021:3706..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9021 3707..3714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.9800375-CDS-H-paniculata_contig9021:3714..41251622931125.9800375-CDS-H-paniculata_contig9021:3714..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 3715..4125 +
1691481601.968033-CDS-H-paniculata_contig9021:3714..41251691481601.968033-CDS-H-paniculata_contig9021:3714..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 3715..4125 +
1622931125.9969194-CDS-H-paniculata_contig9021:5298..58961622931125.9969194-CDS-H-paniculata_contig9021:5298..5896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 5299..5896 +
1691481601.9781735-CDS-H-paniculata_contig9021:5298..58961691481601.9781735-CDS-H-paniculata_contig9021:5298..5896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 5299..5896 +
1622931126.010703-CDS-H-paniculata_contig9021:6374..65301622931126.010703-CDS-H-paniculata_contig9021:6374..6530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 6375..6530 +
1691481601.9886296-CDS-H-paniculata_contig9021:6374..65301691481601.9886296-CDS-H-paniculata_contig9021:6374..6530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 6375..6530 +
1622931126.0299404-CDS-H-paniculata_contig9021:6856..72511622931126.0299404-CDS-H-paniculata_contig9021:6856..7251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 6857..7251 +
1691481601.9975276-CDS-H-paniculata_contig9021:6856..72511691481601.9975276-CDS-H-paniculata_contig9021:6856..7251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 6857..7251 +
1622931126.0488663-CDS-H-paniculata_contig9021:7791..81721622931126.0488663-CDS-H-paniculata_contig9021:7791..8172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 7792..8172 +
1691481602.005376-CDS-H-paniculata_contig9021:7791..81721691481602.005376-CDS-H-paniculata_contig9021:7791..8172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 7792..8172 +
1622931126.0672212-CDS-H-paniculata_contig9021:9076..92321622931126.0672212-CDS-H-paniculata_contig9021:9076..9232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 9077..9232 +
1691481602.0136352-CDS-H-paniculata_contig9021:9076..92321691481602.0136352-CDS-H-paniculata_contig9021:9076..9232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9021 9077..9232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9021.16866.1prot_H-paniculata_contig9021.16866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9021 3715..9232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9021.16866.1

>prot_H-paniculata_contig9021.16866.1 ID=prot_H-paniculata_contig9021.16866.1|Name=mRNA_H-paniculata_contig9021.16866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=699bp
MTRNRQRKNMVCDSESGPISLSLSLLSVYGLLLMSQAANGFLLVQPLGVG
HGTSSVSRAALQLSPAASRTSRTPRRYRRGTRRSCLCASASSTPSLSPSS
RFDDDGGLIVGLNKYSHDSAICIMRGRDGKVLFGCEKERLTRNKHDGGDA
GELVQHALGFLGATLRDVRLVVSNNHHHRVAPFERRIPWSVRMGVHPPSY
ASPQNLIPDAEAHAELSHHLAHAWSAAELSPFDCGLIVVMDGMGEAYGAM
AKAEATLERAARSNEHSNGSDKVEDDSQYYNDLRLMREMDADEQTTAVAA
GRGGGEQARFQQVPENFVPHEAYREAESAYTFAPGPGGGPPVLTPVYKRW
TRERSPPELYNHGFENMESLGAVYSRVSSHIFGDWNACGKVMGLAPWASQ
WSSADPPPPSRLTSGHLLAASFNNENVDQRGDNDDDNDSNSGDSFRLHWD
AIEGLWRPNDLGDPEVRPYYAGLASTAQRGLEEAAMTFVSGLRERTGENN
LCLCGGVALNSVLNGKIAREGGFDRVFVPPCPGDEGIAVGCAAFGYNHLQ
QLLSTSNTAPVSKPVGGRIPISASEQELEVANANVGDEGQGIAGTAVEER
GKEADEEGEQSGAAPPFWGKGWSEEEVEDELEEWEPWVDVRPLEGLEQVA
QAIADGRVVAWFQGRGEFGPRALGSRSLLADPRDPQMPARINTYVKKR*
back to top

mRNA from alignment at H-paniculata_contig9021:3707..9232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9021.16866.1 ID=mRNA_H-paniculata_contig9021.16866.1|Name=mRNA_H-paniculata_contig9021.16866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5526bp|location=Sequence derived from alignment at H-paniculata_contig9021:3707..9232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTAGGTATGACACGAAATAGACAGCGAAAGAATATGGTGTGTGATTCA GAAAGTGGTCCCATCAGCTTATCGTTATCACTACTGTCTGTCTATGGCCT GCTGCTCATGAGTCAAGCAGCGAATGGATTTTTGCTTGTGCAGCCGCTAG GTGTTGGTCATGGAACAAGCTCCGTTTCACGAGCAGCTCTACAGCTCTCA CCTGCTGCAAGCAGAACATCCCGTACACCACGCCGATATCGTCGTGGAAC AAGGAGGTCGTGTCTCTGTGCCTCCGCGTCGTCTACGCCGTCGCTTTCCC CGTCTTCTAGATTCGACGACGATGGTGGATTGATTGTTGGCCTGAACAAG TACAGTCACGACTCGGCCATCTGCATCATGCGCGGTCGGGACGGCAAGGT GCTCTTTGGGTGCGAGAAGGTACGAGTAGGCGGGCGACTACACGTTCTTG TGTACAGACAAAAAACTACAGATACGCTACATTTTCAATTGGCATGCAAA ACGGCTTGTGGAGATGTACGGCATATGTGTATCTTCGACCGACAGACTCG CCTCTGTTGGGTGGGACAGGCTAATTAAGTAATTTTCAAGATCCATCATG TGTCATGAGGCCAAGAGCACGTGCCACCAGGTGCAACACATCTGTGTGGA AAAGCTTGGTAGATCGTAGATTTGATACCTTTACTGTACTTGGTACTCGA CACCATGAAACCAGTAGATTGGAGTTACCATCATGCAGAAGATTGGACGT GCGACAACGATGGTAGAGGGTTGCACAAAATGCCACCGCCGTTGTTGGAG TTAGGGTGTGGCACTGCTCATGTTTGGTTGTAATGACACGTGGCAACTCG CCGACGGGCCGATGGCTACCAGCGCCGTAAAACTGTAGAAATAGCAACAC TGTACTGAAATTTCTGTCTGCATGAATCTTTGCTGTACCATCTTGCTAGG ATCCATCGACCCCCTTGCCCCAAAGCTTGTGCCTTCGTGCATCGTTTTTG CCGCAAAAACAAGCAAAAAATATTATACAGTTGCTGCTGCATTTACATCT TCAGGAATCAAATGTCTTCACGTCCTATACTGCAATAACGAACACAAAAA AAAACCAGCCTCCCCGAAAATAGAGAATACCACTTGATTACATGTTCTTT TTTCTGCGGGTTGTTGCTTCACGGGTTTCCCTCAAAGTGCTCCTTTATCA CCTTCCTCCTCCCAGCCAAAAATACACATACACACACACACACACACACA CAGGCATGCCTTCGAATCTGGAGGTATCGCACTGGGGTGGGAAAACTTTT CAAGCGCATTTGTCTCGGCAATTACGGCATTAGCTTCTGAAAACAAATAG TATGTCGTTGGGAAGTTAGTGCGGAGATCTATCGATTGACGTCTTTCTTC CACTGCGCAAGGTCTCCGTTCTCGAGATGGTCGCGTTTCAAAACGCGTTC ACACCCCGCTGCAATACCTCTGAGTTTTACGATACAGACACCCAACCGAA ACACGCCCGCACGGTGCTGCCACAGGCACAACCACGCAAAGCACACACGC ACGCCTCCCCCCCCCCCGCCCGTCATACACATGCACACACAGGAACGGTT AACGCGCAACAAGCACGACGGCGGAGACGCAGGCGAACTGGTGCAGCACG CCCTGGGCTTCCTAGGCGCGACCCTACGAGACGTTCGTCTCGTCGTCTCA AACAACCATCACCACCGTGTGGCACCCTTCGAGCGCCGCATCCCCTGGTC CGTGAGAATGGGGGTGCACCCGCCGAGCTACGCGAGTCCGCAAAATTTGA TCCCCGACGCCGAAGCCCACGCGGAGCTATCGCACCACCTGGCTCACGCG TGGAGCGCGGCAGAGCTGTCCCCGTTTGATTGCGGTCTGATTGTGGTCAT GGATGGGATGGGGGAGGCCTACGGGGCGATGGCCAAGGCGGAGGCAACGC TGGAGAGAGCGGCGCGATCGAATGAACATAGTAATGGTTCGGATAAGGTC GAAGATGATTCGCAGTATTACAATGATCTGAGGCTCATGAGGGAGATGGA CGCGGATGAGCAGACGACCGCGGTAGCGGCGGGGCGCGGGGGGGGGGAGC AAGCGAGGTTTCAACAGGTTCCTGAGAATTTCGTTCCGCACGAGGCGTAC CGTGAGGCGGAGAGTGCTTATACGTTTGCTCCCGGACCAGGTGTGCTGTC TTGTGTGCATCGTGTACGTATCTGCGAGATATGTGGCAGTGTTTGGTGTA TGTTTGTGCTCGGTGTATGTTTGTGCTCGGTACTGCAGGTAGGTATTTGA CAGGCAAACAGGGCGCGTAGGTAGCTTATTAAGAAAGGCTATAAGCTCCA ATGGAACACTCTTCTTTTTGTTCTGTGGGTGTTAGGACTTCGGTGGTTTA TTCGCCCATGTGCTTATCATTGTTTTTCCCCTACAGACGTATCAGAGAGG TCGTTTGATGAGACAGGGAATAAATGCCATGTGAGAGATGCGATTGAAAA ATTCAATGGTGCACGCTGTATGTAGCTCAGAAAAACGCAAGCCCCAATGG TATAACGGTCAGTCTCTCTCGTTACTGCATGTTACACAGTACAGCTGCCC TCCTTCGCCCATACATATCTGCCTCTCTCGCGACGGCCCTCTCCGAACAC TGTTCTTCTTCCCTGCAGGCGGCGGGCCACCGGTGTTGACCCCGGTGTAC AAGCGGTGGACGCGGGAACGGTCTCCGCCCGAGCTCTACAACCACGGCTT TGAGAATATGGAGTCGCTTGGGGCAGTCTACAGCCGTGTCAGCAGCCACA TTTTCGGTGACTGGAATGCATGCGGTGAGATAACGAGGGAGACAGAGAGA AATGGGAAGAAAGAGAACGCGCGGCGGCGGGGGGTAGGCGAGAGGGGTGG GGGCGACTTCAGCTCTATTGTTTTATAGAAACGGTCAACGTTTTCGTGTC GTGCTATTCGTGGTGTTCTCACGGGGCTGGAAATGTTTTTTGTATGCTCT ATGTGTTCTATTACGTTTCAAGGGTTATGTCGGCACCATTTTCTTACAGC CCGTTACGTATTCTCAAACATGAATCACGCAAATTGTGCCTTATGATGGC GCATTCCTCTCCCCATCTCCCTCACTTCTTACGGCAACCACACGTGGCAG GAAAAGTCATGGGGTTAGCCCCCTGGGCTTCTCAATGGTCGTCCGCGGAT CCACCGCCGCCGTCACGGCTGACTTCGGGTCACCTCCTTGCTGCCAGCTT CAACAACGAGAATGTAGACCAACGGGGCGACAACGATGATGACAACGATA GCAATAGTGGAGACAGTTTCCGTTTGCACTGGGATGCAATAGAAGGGTTG TGGAGGCCGAACGATCTCGGGGACCCCGAAGTCCGCCCTTACTACGCGGG TTTGGCATCGACGGCGCAACGAGGTTTGGAGGAAGCCGCGATGACTTTTG TGTCGGGACTACGAGAGCGAACCGGCGAAAACAACCTGTGTCTTTGCGGA GGCGTTGCCTTGAACAGCGTGCTCAACGGAAAGATCGCGCGGGAGGTAGG TGGGGTGGGCAGGGGAAAGCCCGGGAATTAAGAACATGAGGGGGAGGGGA AAAAAAGCAATGGTACCGAAACGAGGTTGCGGGGAAAAGGGTTCGGGGAC GGAGGGCGGAGGCAGACGTGACATCGAAACGAAATGATGTACATCAGCTA GCCCAGCAAATATCGCTCCTGCAGACTTTCGTGTTCGCTTATGGGAAAAG GTGAGAGGAGGAGGAGGAGGGGGGGGGGCGAGAGGAGCATTACGGTTAGA AAATATTGTGCGTGCTGCACGATAGATGCTGATATGCTACGTCAAGGGAC GGGAAAAAAAAAGGCCGGATCGCATCGGGCTTGGATGAAATGGATGCAGG TATTATTCGGGAGGTTGGTCGGTAAAAATGTAACGCTCGATTACGGCACA AAACAAGTAAGACTTTGCCATGGGTAGGATTTAGGATATACCCCCTCCTC TGCGTCGCCACCGCCACCATCACCGCATTCGCGCTGTCTTGCTCCACCGC TACTCCTGCTCCCCGCGGACCCTCCGGCCGGACAGGGAGGTTTTGACCGT GTGTTCGTGCCGCCTTGCCCGGGAGATGAGGGCATCGCTGTGGGCTGCGC GGCGTTCGGCTATAACCACCTACAGCAGCTCCTGTCTACTTCGAATACGG CCCCAGTGAGTAAGCCTGTTGGCGGGAGAATACCAATTTCTGCCTCGGAA CAGGAACTGGAGGTGGCGAACGCCAATGTGGGGGATGAGGGACAAGGCAT TGCAGGGACTGCGGTAGAGGAGAGGGGCAAAGAGGCAGACGAGGAGGGGG AGCAGTCGGGGGCGGCGCCGCCATTTTGGGGTAAAGGTTGGAGCGAGGAA GAAGTGGAGGATGAACTTGAGGAATGGGAACCCTGGGTGGACGTGCGGCC GCTGGAGGGATTGGAGGTGTGTGTATGTGTGTATATATGTATGTGTGTGT GTATGTATGTGTGTGTGTATATATGTACACCTGTGTTACAGGTCTTGCTT TACGTACATGCCGTAAAAAGTGCTGATGCTTGCTCCGTTTTTACTCTCTT CCTCTCTCTTTCTCTTTCTCTTTTTTCTCTTTCTCTTTTTTCTCTCTCTC TTTGGTGAGCTCTGCAGTGGTGTTTAATTGTATTGTAACACACTTTGTGG CGTGGTGGATATTGTGCGTACCCGTCTCCTTTTTTTTACGTCTATATCGC AATGGTATATATATATTTATATGTGTGTTTGAAAATGAAGGTAACTATCC TCAACATACGATGGGTGAGTGTTACCCATTTTAAGGTGTTTTCCTCAGGT GACCACTACGTTACCCTCTGTTTTTCTTCGATTCTTGCTTTGGAAGACTT CATTTTATGGATAAAACCCGACCGGCTGGCGGTGAGGTCTTACAATCTCT TTTCTTCACATGAGTACTGAATTTGTTGCAATATCTCCCACCATAATTGT GACTTTTGTGTTAGGCGCTTAACGCTTCGGTGTGTCGATGCTGGGGTTCG AACCCATGACCTTGGGGGCCAGAAGCAGATAAGATATCTATCTATCGATG TCATCTATATGAAAATGAGGGTAACTATCCTCGACAGACATTGGGTGATT GTTACCCCTTTTGGAGTGTTTCCTTCAGGTGACCACCACACACACACACA CACAGCTCTCTATATGTGTGTGTATGCTTGTTTCCTTGTGTGCAACATAG TTCGGCAGTATCATATAATATCGCAACGCACGTGTTACGGAGTCGCCACT ATCATGCCACCCTAACATAAAAGTATGTGTACATTGTTGATCTAAAATCA TTTTGTCGCCGTTCCTGCAGCAAGTGGCGCAGGCGATTGCGGACGGACGC GTAGTGGCGTGGTTTCAGGGGCGCGGGGAGTTCGGCCCTCGCGCCCTCGG GTCCCGGTCTTTGCTGGCCGACCCTCGAGATCCGCAAATGCCGGCCCGCA TCAACACCTATGTCAAGAAAAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9021:3707..9232+

>mRNA_H-paniculata_contig9021.16866.1 ID=mRNA_H-paniculata_contig9021.16866.1|Name=mRNA_H-paniculata_contig9021.16866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4194bp|location=Sequence derived from alignment at H-paniculata_contig9021:3707..9232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACGAAATAGACAGCGAAAGAATATGGTGTGTGATTCAGAAAGTGG
TCCCATCAGCTTATCGTTATCACTACTGTCTGTCTATGGCCTGCTGCTCA
TGAGTCAAGCAGCGAATGGATTTTTGCTTGTGCAGCCGCTAGGTGTTGGT
CATGGAACAAGCTCCGTTTCACGAGCAGCTCTACAGCTCTCACCTGCTGC
AAGCAGAACATCCCGTACACCACGCCGATATCGTCGTGGAACAAGGAGGT
CGTGTCTCTGTGCCTCCGCGTCGTCTACGCCGTCGCTTTCCCCGTCTTCT
AGATTCGACGACGATGGTGGATTGATTGTTGGCCTGAACAAGTACAGTCA
CGACTCGGCCATCTGCATCATGCGCGGTCGGGACGGCAAGGTGCTCTTTG
GGTGCGAGAAGATGACACGAAATAGACAGCGAAAGAATATGGTGTGTGAT
TCAGAAAGTGGTCCCATCAGCTTATCGTTATCACTACTGTCTGTCTATGG
CCTGCTGCTCATGAGTCAAGCAGCGAATGGATTTTTGCTTGTGCAGCCGC
TAGGTGTTGGTCATGGAACAAGCTCCGTTTCACGAGCAGCTCTACAGCTC
TCACCTGCTGCAAGCAGAACATCCCGTACACCACGCCGATATCGTCGTGG
AACAAGGAGGTCGTGTCTCTGTGCCTCCGCGTCGTCTACGCCGTCGCTTT
CCCCGTCTTCTAGATTCGACGACGATGGTGGATTGATTGTTGGCCTGAAC
AAGTACAGTCACGACTCGGCCATCTGCATCATGCGCGGTCGGGACGGCAA
GGTGCTCTTTGGGTGCGAGAAGGAACGGTTAACGCGCAACAAGCACGACG
GCGGAGACGCAGGCGAACTGGTGCAGCACGCCCTGGGCTTCCTAGGCGCG
ACCCTACGAGACGTTCGTCTCGTCGTCTCAAACAACCATCACCACCGTGT
GGCACCCTTCGAGCGCCGCATCCCCTGGTCCGTGAGAATGGGGGTGCACC
CGCCGAGCTACGCGAGTCCGCAAAATTTGATCCCCGACGCCGAAGCCCAC
GCGGAGCTATCGCACCACCTGGCTCACGCGTGGAGCGCGGCAGAGCTGTC
CCCGTTTGATTGCGGTCTGATTGTGGTCATGGATGGGATGGGGGAGGCCT
ACGGGGCGATGGCCAAGGCGGAGGCAACGCTGGAGAGAGCGGCGCGATCG
AATGAACATAGTAATGGTTCGGATAAGGTCGAAGATGATTCGCAGTATTA
CAATGATCTGAGGCTCATGAGGGAGATGGACGCGGATGAGCAGACGACCG
CGGTAGCGGCGGGGCGCGGGGGGGGGGAGCAAGCGAGGTTTCAACAGGTT
CCTGAGAATTTCGTTCCGCACGAGGCGTACCGTGAGGCGGAGAGTGCTTA
TACGTTTGCTCCCGGACCAGGAACGGTTAACGCGCAACAAGCACGACGGC
GGAGACGCAGGCGAACTGGTGCAGCACGCCCTGGGCTTCCTAGGCGCGAC
CCTACGAGACGTTCGTCTCGTCGTCTCAAACAACCATCACCACCGTGTGG
CACCCTTCGAGCGCCGCATCCCCTGGTCCGTGAGAATGGGGGTGCACCCG
CCGAGCTACGCGAGTCCGCAAAATTTGATCCCCGACGCCGAAGCCCACGC
GGAGCTATCGCACCACCTGGCTCACGCGTGGAGCGCGGCAGAGCTGTCCC
CGTTTGATTGCGGTCTGATTGTGGTCATGGATGGGATGGGGGAGGCCTAC
GGGGCGATGGCCAAGGCGGAGGCAACGCTGGAGAGAGCGGCGCGATCGAA
TGAACATAGTAATGGTTCGGATAAGGTCGAAGATGATTCGCAGTATTACA
ATGATCTGAGGCTCATGAGGGAGATGGACGCGGATGAGCAGACGACCGCG
GTAGCGGCGGGGCGCGGGGGGGGGGAGCAAGCGAGGTTTCAACAGGTTCC
TGAGAATTTCGTTCCGCACGAGGCGTACCGTGAGGCGGAGAGTGCTTATA
CGTTTGCTCCCGGACCAGGCGGCGGGCCACCGGTGTTGACCCCGGTGTAC
AAGCGGTGGACGCGGGAACGGTCTCCGCCCGAGCTCTACAACCACGGCTT
TGAGAATATGGAGTCGCTTGGGGCAGTCTACAGCCGTGTCAGCAGCCACA
TTTTCGGTGACTGGAATGCATGCGGCGGCGGGCCACCGGTGTTGACCCCG
GTGTACAAGCGGTGGACGCGGGAACGGTCTCCGCCCGAGCTCTACAACCA
CGGCTTTGAGAATATGGAGTCGCTTGGGGCAGTCTACAGCCGTGTCAGCA
GCCACATTTTCGGTGACTGGAATGCATGCGGAAAAGTCATGGGGTTAGCC
CCCTGGGCTTCTCAATGGTCGTCCGCGGATCCACCGCCGCCGTCACGGCT
GACTTCGGGTCACCTCCTTGCTGCCAGCTTCAACAACGAGAATGTAGACC
AACGGGGCGACAACGATGATGACAACGATAGCAATAGTGGAGACAGTTTC
CGTTTGCACTGGGATGCAATAGAAGGGTTGTGGAGGCCGAACGATCTCGG
GGACCCCGAAGTCCGCCCTTACTACGCGGGTTTGGCATCGACGGCGCAAC
GAGGTTTGGAGGAAGCCGCGATGACTTTTGTGTCGGGACTACGAGAGCGA
ACCGGCGAAAACAACCTGTGTCTTTGCGGAGGCGTTGCCTTGAACAGCGT
GCTCAACGGAAAGATCGCGCGGGAGGAAAAGTCATGGGGTTAGCCCCCTG
GGCTTCTCAATGGTCGTCCGCGGATCCACCGCCGCCGTCACGGCTGACTT
CGGGTCACCTCCTTGCTGCCAGCTTCAACAACGAGAATGTAGACCAACGG
GGCGACAACGATGATGACAACGATAGCAATAGTGGAGACAGTTTCCGTTT
GCACTGGGATGCAATAGAAGGGTTGTGGAGGCCGAACGATCTCGGGGACC
CCGAAGTCCGCCCTTACTACGCGGGTTTGGCATCGACGGCGCAACGAGGT
TTGGAGGAAGCCGCGATGACTTTTGTGTCGGGACTACGAGAGCGAACCGG
CGAAAACAACCTGTGTCTTTGCGGAGGCGTTGCCTTGAACAGCGTGCTCA
ACGGAAAGATCGCGCGGGAGGGAGGTTTTGACCGTGTGTTCGTGCCGCCT
TGCCCGGGAGATGAGGGCATCGCTGTGGGCTGCGCGGCGTTCGGCTATAA
CCACCTACAGCAGCTCCTGTCTACTTCGAATACGGCCCCAGTGAGTAAGC
CTGTTGGCGGGAGAATACCAATTTCTGCCTCGGAACAGGAACTGGAGGTG
GCGAACGCCAATGTGGGGGATGAGGGACAAGGCATTGCAGGGACTGCGGT
AGAGGAGAGGGGCAAAGAGGCAGACGAGGAGGGGGAGCAGTCGGGGGCGG
CGCCGCCATTTTGGGGTAAAGGTTGGAGCGAGGAAGAAGTGGAGGATGAA
CTTGAGGAATGGGAACCCTGGGTGGACGTGCGGCCGCTGGAGGGATTGGA
GGGAGGTTTTGACCGTGTGTTCGTGCCGCCTTGCCCGGGAGATGAGGGCA
TCGCTGTGGGCTGCGCGGCGTTCGGCTATAACCACCTACAGCAGCTCCTG
TCTACTTCGAATACGGCCCCAGTGAGTAAGCCTGTTGGCGGGAGAATACC
AATTTCTGCCTCGGAACAGGAACTGGAGGTGGCGAACGCCAATGTGGGGG
ATGAGGGACAAGGCATTGCAGGGACTGCGGTAGAGGAGAGGGGCAAAGAG
GCAGACGAGGAGGGGGAGCAGTCGGGGGCGGCGCCGCCATTTTGGGGTAA
AGGTTGGAGCGAGGAAGAAGTGGAGGATGAACTTGAGGAATGGGAACCCT
GGGTGGACGTGCGGCCGCTGGAGGGATTGGAGCAAGTGGCGCAGGCGATT
GCGGACGGACGCGTAGTGGCGTGGTTTCAGGGGCGCGGGGAGTTCGGCCC
TCGCGCCCTCGGGTCCCGGTCTTTGCTGGCCGACCCTCGAGATCCGCAAA
TGCCGGCCCGCATCAACACCTATGTCAAGAAAAGGTGACAAGTGGCGCAG
GCGATTGCGGACGGACGCGTAGTGGCGTGGTTTCAGGGGCGCGGGGAGTT
CGGCCCTCGCGCCCTCGGGTCCCGGTCTTTGCTGGCCGACCCTCGAGATC
CGCAAATGCCGGCCCGCATCAACACCTATGTCAAGAAAAGGTGA
back to top