mRNA_H-paniculata_contig9.16848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9.16848.1
Unique NamemRNA_H-paniculata_contig9.16848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9.16848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9contigH-paniculata_contig9:63918..64495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size578
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9.16848.1prot_H-paniculata_contig9.16848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9 63956..64264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.6825943-UTR-H-paniculata_contig9:63917..639551622931122.6825943-UTR-H-paniculata_contig9:63917..63955Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9 63918..63955 +
1691481600.3811617-UTR-H-paniculata_contig9:63917..639551691481600.3811617-UTR-H-paniculata_contig9:63917..63955Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9 63918..63955 +
1622931122.7135465-UTR-H-paniculata_contig9:64264..644951622931122.7135465-UTR-H-paniculata_contig9:64264..64495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9 64265..64495 +
1691481600.3981352-UTR-H-paniculata_contig9:64264..644951691481600.3981352-UTR-H-paniculata_contig9:64264..64495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9 64265..64495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.6956563-CDS-H-paniculata_contig9:63955..642641622931122.6956563-CDS-H-paniculata_contig9:63955..64264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9 63956..64264 +
1691481600.3897636-CDS-H-paniculata_contig9:63955..642641691481600.3897636-CDS-H-paniculata_contig9:63955..64264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9 63956..64264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9.16848.1

>prot_H-paniculata_contig9.16848.1 ID=prot_H-paniculata_contig9.16848.1|Name=mRNA_H-paniculata_contig9.16848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MSSVENIQISIFIILMAQLLFYLFNFRCQTLPDASTGGHVKRKNIHRVLT
VQHCLMHQPTARCAMRENTKIKVDNISSPSFSQLLPPALHNTPTTAYHST
QV*
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mRNA from alignment at H-paniculata_contig9:63918..64495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9.16848.1 ID=mRNA_H-paniculata_contig9.16848.1|Name=mRNA_H-paniculata_contig9.16848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig9:63918..64495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTGTCATTATCTAGACTGCCCCTGATCGGTCGACCATGTCCTCAGTA
GAAAATATACAAATAAGTATATTTATCATTTTGATGGCACAACTATTATT
TTATTTATTTAATTTTAGATGCCAAACGCTGCCTGATGCATCGACGGGTG
GCCACGTAAAGCGAAAAAACATACATCGTGTCCTCACTGTACAACACTGC
CTGATGCATCAACCAACGGCTCGCTGTGCAATGCGAGAAAACACAAAGAT
CAAAGTCGACAACATCTCCAGTCCTTCATTTAGCCAACTACTGCCGCCGG
CACTACACAACACACCAACAACAGCGTACCACTCTACACAAGTCTAGGCT
AGGCTCTAACGAAAACGTATTATTCCCCGCTTGCCAAGAATAGTTACAGA
GTAAGTTTTCCGACTGGGAAAAGAAACCCTTGAGGCATGTACTACACGAG
GCAGTTTCTTTACCGATTTCTCCCGTTTTCCCGTTTTCCGAAAAGTAGAC
ATCACGGTAGCAAGCTGAACCAGTTGACGACTGTGATCTAAGTACACTAG
ATATGTGAGGGTAACAGTTTGTACGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig9:63918..64495+

>mRNA_H-paniculata_contig9.16848.1 ID=mRNA_H-paniculata_contig9.16848.1|Name=mRNA_H-paniculata_contig9.16848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig9:63918..64495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCAGTAGAAAATATACAAATAAGTATATTTATCATTTTGATGGC
ACAACTATTATTTTATTTATTTAATTTTAGATGCCAAACGCTGCCTGATG
CATCGACGGGTGGCCACGTAAAGCGAAAAAACATACATCGTGTCCTCACT
GTACAACACTGCCTGATGCATCAACCAACGGCTCGCTGTGCAATGCGAGA
AAACACAAAGATCAAAGTCGACAACATCTCCAGTCCTTCATTTAGCCAAC
TACTGCCGCCGGCACTACACAACACACCAACAACAGCGTACCACTCTACA
CAAGTCTAGATGTCCTCAGTAGAAAATATACAAATAAGTATATTTATCAT
TTTGATGGCACAACTATTATTTTATTTATTTAATTTTAGATGCCAAACGC
TGCCTGATGCATCGACGGGTGGCCACGTAAAGCGAAAAAACATACATCGT
GTCCTCACTGTACAACACTGCCTGATGCATCAACCAACGGCTCGCTGTGC
AATGCGAGAAAACACAAAGATCAAAGTCGACAACATCTCCAGTCCTTCAT
TTAGCCAACTACTGCCGCCGGCACTACACAACACACCAACAACAGCGTAC
CACTCTACACAAGTCTAG
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