mRNA_H-paniculata_contig9.16847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9.16847.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 2.630e-130 Identity = 197/343 (57.43%), Postives = 248/343 (72.30%), Query Frame = 2
Query: 461 RPPANEREKRWAQIPGYNAAMDLAFYSHIHKTSGTSISYFLSEMFPKQSVVPTSHAFRGLNKAQISGKPEPWWDRFQVMFSHNRPNVTAEIEVPESKNVRLLLAVRNPLLHKASIYFESVCRYGLHIKD-GVIDQEEATRARMEAP--YSAHFSFCRDPQLWVGSRQFNTVYRNFQSTWLSYGGAYRHPCIRPELEKSQWN----NAGGGCAAIKERGEDEAIWEEFFERSADAAIRRLEEALWVGVTERMVEASCLLLFTLGKPYHAIGEHRLKQPRPISVWTRESIAKAQRYDKADWRVFEAANDILDLRLWTVKETLKTAGESERERLG-HCFEVLTGAD 1465
R PAN+ ++RW++IP Y DL F+SHIHKT GTS+ L+ +FP+ ++VPTSH +GL + G WW FQ+MFSHNR NVT I +P +K R+L+ +RNPLLHKASI+FESVCR+G HI D G IDQE AT AR+ + ++FCRDP++WVGS+QF+ VYRNF++ WLSYG A HPCIRP+ E ++W + GG C AIK G+D +W +FER+ADAAIRR+E ALWVGVTERM E+ CLL TLGK + +HRLK PRPI+VW ++ KA YD+ADWRVFEAAND LDLRLWT +E LK+AGE ER RLG HCF+VL G D
Sbjct: 88 RAPANDVDRRWSEIPLYRPGQDLVFFSHIHKTGGTSL---LANVFPRTALVPTSHPSKGLRVNHLQGHDSEWWKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDDTDVGGTCKAIKASGQDADVWAAYFERTADAAIRRMEGALWVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTARERLKSAGEEERARLGDHCFQVLAGKD 427
BLAST of mRNA_H-paniculata_contig9.16847.1 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI) HSP 1 Score: 201 bits (511), Expect = 2.010e-54 Identity = 127/375 (33.87%), Postives = 181/375 (48.27%), Query Frame = 2
Query: 377 GVVNFETSAGELRLAARKG---LIPHCGLGPRPPAN---------EREKRWAQIPGYNAAMDLAFYSHIHKTSGTSISYFLSEMFPKQSVVPTSHAFRGLNKAQISGKPEPWWDRFQ-VMFSHNRPNVTAEIEVPESKNVRLLLAVRNPLLHKASIYFESVCRYGLHIKDGVIDQEEATRARMEAPYSAHFSFCRDPQLWVGSRQFNTVYRNFQSTWLSYGGAYRHPCIRPELEKSQWNNAGGGCAAIKERGEDEAIWEEFFERSADAAIRRLEEALWVGVTERMVEASCLLLFTLGKPYHAIGEHRLKQPRPISVWTRESIAKAQRYDKADWRVFEAANDILDLRLWTVKETLKTAGESERERLG-HCFEVLTG 1459
G +N E + RK L+ GPRPP+N +RE++WA++P Y+ L F++HI KTSGTS+S+ L ++F +++VVPTSH + ++ G + WW ++ V ++HN E K H+ C YG H ++PE K ++ C ++K G+ AI EE+++R A++AI+RL + LWVGVTER EA CLL TLGK +G +R K+PRPISVW +++K +YD+ADW+VF AANDILDLR+WT +E LK AGE E ERLG HC V+ G
Sbjct: 5 GGLNVGQQQSEQPASRRKQQTILVAGGSRGPRPPSNHLGLRWFKQDRERKWAELPEYHPDEHLLFFAHIIKTSGTSLSFVLRDIFGEEAVVPTSHESGYMKLGEVQGHDDNWWAPYEAVTYAHNE----------EDK-------------HR--------CVYG------------------------------------------------------------HAWVKPE--KGGDHHDEESCNSLKASGKHNAILEEYYDRMAESAIKRLGDGLWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGEEELERLGKHCVNVING 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9.16847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9.16847.1 >prot_H-paniculata_contig9.16847.1 ID=prot_H-paniculata_contig9.16847.1|Name=mRNA_H-paniculata_contig9.16847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=455bp MPSSSGIDNAVPMWHRLLSGCQRGRRSLSHICRVVFTGAVACGGLLCVVVback to top mRNA from alignment at H-paniculata_contig9:32408..61729+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9.16847.1 ID=mRNA_H-paniculata_contig9.16847.1|Name=mRNA_H-paniculata_contig9.16847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=29322bp|location=Sequence derived from alignment at H-paniculata_contig9:32408..61729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9:32408..61729+ >mRNA_H-paniculata_contig9.16847.1 ID=mRNA_H-paniculata_contig9.16847.1|Name=mRNA_H-paniculata_contig9.16847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig9:32408..61729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |