mRNA_H-paniculata_contig9.16846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9.16846.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 1.300e-130 Identity = 192/345 (55.65%), Postives = 250/345 (72.46%), Query Frame = 1
Query: 331 RPPTNEREERWAQIPVYVKSTDLLLYSHIHKTSGTSLSLLLARIFPEQTIVPSSHMSKGVNTSELSGKPAEWWEPFQVMFSHNRPNISTEVGIPDSKNVRLLLVVRNPLLHIASIYFESVCRYGLHIK-GGVVDQEEATRARM--KNPRTNYFSFCRDPELWVGSEQFETVYRNFQSVWLSYGGAYRHPCIGPQLKENQWN----KAGDGCAAIQENGEDEAIWEKFFERSADAAIRRLEGALWVGVTERMTEAICLLFFTLRKSYHPLGKFRYKLPRPISIWKEPSIVKAERYEKADWRVFEAANDILDLRLWTAKTMLKNAGKDEREGLGD-CFEVLTGANGS 1341
R P N+ + RW++IP+Y DL+ +SHIHKT GTSL LA +FP +VP+SH SKG+ + L G +EWW+PFQ+MFSHNR N++ +GIP +K R+L+ +RNPLLH ASI+FESVCR+G HI G +DQE AT AR+ K T ++FCRDPE+WVGS+QF+ VYRNF++ WLSYG A HPCI P + N+W G C AI+ +G+D +W +FER+ADAAIRR+EGALWVGVTERM E++CLLF TL K + + R K PRPI++W E + KA Y++ADWRVFEAAND LDLRLWTA+ LK+AG++ER LGD CF+VL G +G+
Sbjct: 88 RAPANDVDRRWSEIPLYRPGQDLVFFSHIHKTGGTSL---LANVFPRTALVPTSHPSKGLRVNHLQGHDSEWWKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDDTDVGGTCKAIKASGQDADVWAAYFERTADAAIRRMEGALWVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTARERLKSAGEEERARLGDHCFQVLAGKDGN 429
BLAST of mRNA_H-paniculata_contig9.16846.1 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.210e-35 Identity = 75/171 (43.86%), Postives = 111/171 (64.91%), Query Frame = 1
Query: 844 FQSVWLSYGGAYRHPCIGPQLKENQW---NKAGD-----GCAAIQENGEDEAIWEKFFERSADAAIRRLEGALWVGVTERMTEAICLLFFTLRKSYHPLGKFRYKLPRPISIWKEPSIVKAERYEKADWRVFEAANDILDLRLWTAKTMLKNAGKDEREGLGD-CFEVLTG 1329
+++V ++ +H C+ + W K GD C +++ +G+ AI E++++R A++AI+RL LWVGVTER EA CLLF TL K +G +R+K PRPIS+W E ++ K +Y++ADW+VF AANDILDLR+WTA+ LK+AG++E E LG C V+ G
Sbjct: 120 YEAVTYAHNEEDKHRCV----YGHAWVKPEKGGDHHDEESCNSLKASGKHNAILEEYYDRMAESAIKRLGDGLWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGEEELERLGKHCVNVING 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9.16846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9.16846.1 >prot_H-paniculata_contig9.16846.1 ID=prot_H-paniculata_contig9.16846.1|Name=mRNA_H-paniculata_contig9.16846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=470bp MSSASETGQAIPLWRRLLLIGQSNRRVNTHTGGYFTGGVALAIVMCIAVYback to top mRNA from alignment at H-paniculata_contig9:7272..28749+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9.16846.1 ID=mRNA_H-paniculata_contig9.16846.1|Name=mRNA_H-paniculata_contig9.16846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21478bp|location=Sequence derived from alignment at H-paniculata_contig9:7272..28749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9:7272..28749+ >mRNA_H-paniculata_contig9.16846.1 ID=mRNA_H-paniculata_contig9.16846.1|Name=mRNA_H-paniculata_contig9.16846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2820bp|location=Sequence derived from alignment at H-paniculata_contig9:7272..28749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |