mRNA_H-paniculata_contig8994.16845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8994.16845.1
Unique NamemRNA_H-paniculata_contig8994.16845.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.640e-25
Identity = 84/223 (37.67%), Postives = 117/223 (52.47%), Query Frame = 1 
Query:  133 LRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASADTRCTNGDT--PLHMAARRDNAEAVLELLLLGANPNIGMPASSNETPLQGAFGQYAYGSLVLRSG-GKVDVKDKDGQTPLHVAAASGNMDAIEYLLKARA 792
            L G   E+  L+  G+  +QW +WLRAPLEHA A GN+ L ++LL AGA+G AGW G RGR++L AAA GG    V  ++ +G  +DVNVV     + + LH A+        + L+  GA  + R   GD    LH+A    + + V  LL+ GA PN    +      L  A G     S +L +    VD  D  G +PL VA+  G+   +E LL+A A
Sbjct:   10 LEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVS-LSSRRSALHVASVCGHEAAAKKLIIAGADVN-RVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGA 230
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.750e-24
Identity = 83/233 (35.62%), Postives = 116/233 (49.79%), Query Frame = 1 
Query:  151 ELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASAD-TRCTNGDTPLHMAARRDNAEAVLELLLLGANPNIGMPAS-SNETPLQGAF--------------------GQYAYGSLVLRSGGKVDVKDKDGQTPLHVAAASGNMDAIEYLLK 783
            E+  +V EG+  +QW +WLRAPLEHA A+GN+ L  +LL AG DG AGW G RGRSLL AAA GG  G +  ++ AG G DVNVV       + L+ +         R L+  GA  +     +   PL  A +    + V  LL+ GANPN+ +  S  + TPL  A                     G  A   ++L +G   D++D D  + L  AA    +D ++ LL+
Sbjct:   14 EIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVAS-STGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLE 245
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.300e-22
Identity = 82/223 (36.77%), Postives = 110/223 (49.33%), Query Frame = 1 
Query:  133 LRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASADTRCTNGD--TPLHMAARRDNAEAVLELLLLGANPNIGMPASSNETPLQGAFGQYAYGSLVLR-SGGKVDVKDKDGQTPLHVAAASGNMDAIEYLLKARA 792
            L G   E+  L+   +  +QW  WLRAPLEHA A GNI L ++LL AGADG AGW G RGR++L AA              +G   DVNVV     K + LH A         R LM  GA+   R   GD   P H+AA   + + V  LL+ GA PN           +  A G     S +L  +   ++ +D D  +PL +A+A+G+   +E LL+A A
Sbjct:   10 LEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVS-VSSKRSALHLAVVCGHEAAARTLMIAGANI-RRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLHSPLMLASANGHRSTVEALLRAGA 230
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 8.440e-20
Identity = 71/160 (44.38%), Postives = 95/160 (59.38%), Query Frame = 1 
Query:  118 LLAPALRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAV-RMMIDAGAGADVNVVKDFGIKY-TPLHYAAHSNDIDTIRLLMKCGASADTRCTNGDTPLHMAARRDNAEAVLELLLLG 591
            +L+  L G+  E+  LV E + + QW +WLRAPLEHA A GNI L  +L+ AGADGSAGW G  GR+LL AAA G  E  V R++ + GA  DVNV   FG +  + LH AA  +D    R+L+  GA  +     G +PLH+AA + +   +  LL  G
Sbjct:   60 VLSDDLDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVNVC--FGDRLESALHVAAGRDDQHLSRVLLIAGADPNLLDDVGRSPLHVAAEKGHHRVLGFLLRKG 217
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.850e-19
Identity = 56/124 (45.16%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:  133 LRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASAD 504
            L G G+ +L LV + +  +QWTKWLR PLEHA   GN AL +KLL  GA+ SAGW G  GR+L+ A AEGG E  + M+  AGAG  +N         TPLH A     +   ++LM  GA  +
Sbjct:   11 LHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQVISMLTRAGAGKYINDQAPLS-GLTPLHLAVSGGKLAATKVLMLAGADVN 133
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.970e-19
Identity = 81/222 (36.49%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:  133 LRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLH--------YAAHSNDIDTIRLLMKCGASADTRCTNGDTPLHMAARRDNAEAVLELLLLGANPNIGMPASSNETPLQGA-FGQYAYGSLVLRSGGKVDVKDKDGQTPLHVAAASGNMDAIE 771
            L+G+  E+  LV  G+  +QW +WLR PLEHA A GN+ L   LL AGADGSAGW G   R+L+ AAA GG E  V  ++ AGA  DVN V     K + L+        +AA   D     LL++ GA  D + T+G TPL  A    +   V  LL  GA+ +I     S     +                    +  D  G TPLH+AA      AI+
Sbjct:   10 LQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPDVNTVS-ISSKRSALYTATVCGHEHAARGLDRIVSALLLR-GAYTDAQDTSGATPLIYACGSGHLSVVNTLLAAGADVDIIRDVDSYSALDKAVCXXXXXXXXXXXXXXXXXNACDDAGFTPLHLAAQKDQPGAID 229
[Close]
BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.260e-18
Identity = 60/124 (48.39%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:  133 LRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASAD 504
            L+G+  E+  LV   +  +QW +WLR PLEHA A GN+ L   LLGAGADGSAGW G RGR+L+ AAA GG E  V  ++ AGA  DVNVV     K + L+ A      D  R L+  GA  D
Sbjct:   10 LQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVS-VSSKRSALYTATMCGHEDAARRLVAAGADVD 132
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.820e-18
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:  136 RGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASAD 504
            +G+G E+  LV   +  +QW +WLR PLEHA A GN+ L   LL AGADGSAGW G RGR+L+ AAA GG E  V  ++ AGA  DVNVV     K + L+ A      D  R L+  GA  +
Sbjct:   11 QGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVS-VSSKRSSLYTATVCGHKDAARRLITAGADVN 132
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.900e-18
Identity = 85/258 (32.95%), Postives = 110/258 (42.64%), Query Frame = 1 
Query:  127 PALRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGASAD----------------------------------TRCTNGDTPLHMAAR--RDNAEAVLELLLLGANPNIGMPASSNETPLQGAFGQYAYGSLVLRSGGKVDVKDKDGQTPLHVAAASGNMDAIEYLLKARA 792
            P L G    + +L+  G+  +QW +WLRAPLEHA A G   L +KLL AGADG AGWSG RGR+LL AAA GG    V  ++ AG   DVNVV     + + LH +A        R L+  GA A+                                   R   G TPLH AA   +D   AVL            MP++                          D+ DK G +PL VA+  G++  ++ LL A A
Sbjct:    6 PVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVS-VSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLT----------DMPSTDK------------------------DILDKSGLSPLTVASQRGHLSTVKTLLNAGA 228
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BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.120e-17
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:   97 AKEEEKELLAPALRGIGEELLSLVIEGSDAKQWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAEGGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKCGA 495
            A EE++     AL G+ + L  LV E + + QW++WLRAPLEHA+A G+  LA  LL AGADGSAGW G   R+LL AAAEGG E  V  ++D G   +++VV     + T LH A      +  R+LM  GA
Sbjct:    2 AAEEDRT----ALNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGADGSAGWEGCGDRTLLQAAAEGGNEEVVLTLLDNGGVEELDVVSGDNER-TALHRALAGGHTEAARVLMLAGA 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8994.16845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1F4_9PHAE8.640e-2537.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI5.750e-2435.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE08_ECTSI4.300e-2236.77Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7G692_ECTSI8.440e-2044.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM65_ECTSI5.850e-1945.16Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LRS0_ECTSI5.970e-1936.49Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI1.260e-1848.39Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI3.820e-1847.15Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI4.900e-1832.95Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LKW6_ECTSI7.120e-1745.86Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8994contigH-paniculata_contig8994:6049..7083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue3.5e-22
Seed eggNOG ortholog2880.D7FXA8
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size930
Cds size891
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8994.16845.1prot_H-paniculata_contig8994.16845.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8994 6088..7083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.5704103-UTR-H-paniculata_contig8994:6048..60871622931122.5704103-UTR-H-paniculata_contig8994:6048..6087Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8994 6049..6087 +
1691481600.3520696-UTR-H-paniculata_contig8994:6048..60871691481600.3520696-UTR-H-paniculata_contig8994:6048..6087Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8994 6049..6087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.6194139-CDS-H-paniculata_contig8994:6087..67201622931122.6194139-CDS-H-paniculata_contig8994:6087..6720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8994 6088..6720 +
1691481600.3652358-CDS-H-paniculata_contig8994:6087..67201691481600.3652358-CDS-H-paniculata_contig8994:6087..6720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8994 6088..6720 +
1622931122.6364093-CDS-H-paniculata_contig8994:6825..70831622931122.6364093-CDS-H-paniculata_contig8994:6825..7083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8994 6826..7083 +
1691481600.3730154-CDS-H-paniculata_contig8994:6825..70831691481600.3730154-CDS-H-paniculata_contig8994:6825..7083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8994 6826..7083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8994.16845.1

>prot_H-paniculata_contig8994.16845.1 ID=prot_H-paniculata_contig8994.16845.1|Name=mRNA_H-paniculata_contig8994.16845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MVIYDYYLQSLRSPDPTWHAKEEEKELLAPALRGIGEELLSLVIEGSDAK
QWTKWLRAPLEHALAAGNIALAKKLLGAGADGSAGWSGARGRSLLLAAAE
GGGEGAVRMMIDAGAGADVNVVKDFGIKYTPLHYAAHSNDIDTIRLLMKC
GASADTRCTNGDTPLHMAARRDNAEAVLELLLLGANPNIGMPASSNETPL
QGAFGQYAYGSLVLRSGGKVDVKDKDGQTPLHVAAASGNMDAIEYLLKAR
APVGARDRDRETPLHTAARAGYAAIAERLLRAGSDVEARDAYGLTPL
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mRNA from alignment at H-paniculata_contig8994:6049..7083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8994.16845.1 ID=mRNA_H-paniculata_contig8994.16845.1|Name=mRNA_H-paniculata_contig8994.16845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-paniculata_contig8994:6049..7083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACATCCACGGCGATAGCAGACGCCAGCCACAACCACCATGGTCATATA
CGACTACTACCTACAGTCATTAAGGAGTCCAGACCCAACTTGGCACGCCA
AGGAGGAGGAGAAGGAACTATTAGCGCCAGCGTTGCGAGGTATAGGAGAA
GAACTACTGTCCCTGGTCATCGAGGGCTCAGACGCCAAGCAATGGACCAA
GTGGTTGAGAGCTCCTCTCGAGCACGCACTTGCTGCCGGTAACATAGCCC
TTGCGAAGAAACTTCTCGGGGCTGGAGCAGATGGTAGCGCCGGGTGGTCC
GGAGCTCGTGGCCGCTCACTTCTCCTTGCCGCAGCCGAGGGGGGAGGGGA
GGGTGCTGTGAGGATGATGATCGATGCGGGCGCTGGGGCGGACGTAAATG
TGGTAAAAGATTTTGGGATCAAGTACACGCCTTTGCACTACGCTGCTCAC
TCAAACGATATAGACACAATTCGCCTACTCATGAAATGCGGGGCGTCTGC
GGACACCAGGTGCACCAACGGTGATACGCCACTTCACATGGCAGCTCGTC
GTGACAATGCGGAGGCTGTATTGGAACTGTTATTGCTGGGCGCCAATCCC
AACATTGGGATGCCTGCCTCTTCGAACGAAACGCCATTACAGGGAGCATT
CGGTCAGTATGCGTACGGCTCTGTCGCTACCCTGCTTGAAGGTGGTGCTT
GCGCTAATATCTGTGATTGGGACGGTACGTTTCTTATTCACGAGGCGGCT
AGAATTGGCTCGGGATACTTCATGCAGTTGGTGCTCCGAAGTGGCGGGAA
GGTAGATGTCAAAGACAAAGACGGGCAAACACCGCTGCATGTGGCAGCGG
CTAGCGGCAATATGGATGCTATCGAATATCTTCTCAAAGCCAGAGCACCC
GTGGGGGCGCGGGATCGTGACAGAGAAACGCCTCTCCACACAGCGGCGCG
TGCGGGATACGCTGCGATAGCAGAGCGACTTTTGAGGGCTGGTTCAGATG
TTGAAGCCAGGGATGCGTACGGCTTAACCCCGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig8994:6049..7083+

>mRNA_H-paniculata_contig8994.16845.1 ID=mRNA_H-paniculata_contig8994.16845.1|Name=mRNA_H-paniculata_contig8994.16845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig8994:6049..7083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCATATACGACTACTACCTACAGTCATTAAGGAGTCCAGACCCAAC
TTGGCACGCCAAGGAGGAGGAGAAGGAACTATTAGCGCCAGCGTTGCGAG
GTATAGGAGAAGAACTACTGTCCCTGGTCATCGAGGGCTCAGACGCCAAG
CAATGGACCAAGTGGTTGAGAGCTCCTCTCGAGCACGCACTTGCTGCCGG
TAACATAGCCCTTGCGAAGAAACTTCTCGGGGCTGGAGCAGATGGTAGCG
CCGGGTGGTCCGGAGCTCGTGGCCGCTCACTTCTCCTTGCCGCAGCCGAG
GGGGGAGGGGAGGGTGCTGTGAGGATGATGATCGATGCGGGCGCTGGGGC
GGACGTAAATGTGGTAAAAGATTTTGGGATCAAGTACACGCCTTTGCACT
ACGCTGCTCACTCAAACGATATAGACACAATTCGCCTACTCATGAAATGC
GGGGCGTCTGCGGACACCAGGTGCACCAACGGTGATACGCCACTTCACAT
GGCAGCTCGTCGTGACAATGCGGAGGCTGTATTGGAACTGTTATTGCTGG
GCGCCAATCCCAACATTGGGATGCCTGCCTCTTCGAACGAAACGCCATTA
CAGGGAGCATTCGGTCAGTATGCGTACGGCTCTATGGTCATATACGACTA
CTACCTACAGTCATTAAGGAGTCCAGACCCAACTTGGCACGCCAAGGAGG
AGGAGAAGGAACTATTAGCGCCAGCGTTGCGAGGTATAGGAGAAGAACTA
CTGTCCCTGGTCATCGAGGGCTCAGACGCCAAGCAATGGACCAAGTGGTT
GAGAGCTCCTCTCGAGCACGCACTTGCTGCCGGTAACATAGCCCTTGCGA
AGAAACTTCTCGGGGCTGGAGCAGATGGTAGCGCCGGGTGGTCCGGAGCT
CGTGGCCGCTCACTTCTCCTTGCCGCAGCCGAGGGGGGAGGGGAGGGTGC
TGTGAGGATGATGATCGATGCGGGCGCTGGGGCGGACGTAAATGTGGTAA
AAGATTTTGGGATCAAGTACACGCCTTTGCACTACGCTGCTCACTCAAAC
GATATAGACACAATTCGCCTACTCATGAAATGCGGGGCGTCTGCGGACAC
CAGGTGCACCAACGGTGATACGCCACTTCACATGGCAGCTCGTCGTGACA
ATGCGGAGGCTGTATTGGAACTGTTATTGCTGGGCGCCAATCCCAACATT
GGGATGCCTGCCTCTTCGAACGAAACGCCATTACAGGGAGCATTCGGTCA
GTATGCGTACGGCTCTTTGGTGCTCCGAAGTGGCGGGAAGGTAGATGTCA
AAGACAAAGACGGGCAAACACCGCTGCATGTGGCAGCGGCTAGCGGCAAT
ATGGATGCTATCGAATATCTTCTCAAAGCCAGAGCACCCGTGGGGGCGCG
GGATCGTGACAGAGAAACGCCTCTCCACACAGCGGCGCGTGCGGGATACG
CTGCGATAGCAGAGCGACTTTTGAGGGCTGGTTCAGATGTTGAAGCCAGG
GATGCGTACGGCTTAACCCCGCTCTTGGTGCTCCGAAGTGGCGGGAAGGT
AGATGTCAAAGACAAAGACGGGCAAACACCGCTGCATGTGGCAGCGGCTA
GCGGCAATATGGATGCTATCGAATATCTTCTCAAAGCCAGAGCACCCGTG
GGGGCGCGGGATCGTGACAGAGAAACGCCTCTCCACACAGCGGCGCGTGC
GGGATACGCTGCGATAGCAGAGCGACTTTTGAGGGCTGGTTCAGATGTTG
AAGCCAGGGATGCGTACGGCTTAACCCCGCTC
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