mRNA_H-paniculata_contig899.16843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig899.16843.1
Unique NamemRNA_H-paniculata_contig899.16843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig899.16843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig899contigH-paniculata_contig899:28141..29362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1222
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig899.16843.1prot_H-paniculata_contig899.16843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig899 28172..28897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.4471323-UTR-H-paniculata_contig899:28140..281711622931122.4471323-UTR-H-paniculata_contig899:28140..28171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig899 28141..28171 +
1691481600.30049-UTR-H-paniculata_contig899:28140..281711691481600.30049-UTR-H-paniculata_contig899:28140..28171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig899 28141..28171 +
1622931122.473139-UTR-H-paniculata_contig899:28897..293621622931122.473139-UTR-H-paniculata_contig899:28897..29362Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig899 28898..29362 +
1691481600.3196037-UTR-H-paniculata_contig899:28897..293621691481600.3196037-UTR-H-paniculata_contig899:28897..29362Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig899 28898..29362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.4614232-CDS-H-paniculata_contig899:28171..288971622931122.4614232-CDS-H-paniculata_contig899:28171..28897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig899 28172..28897 +
1691481600.3115456-CDS-H-paniculata_contig899:28171..288971691481600.3115456-CDS-H-paniculata_contig899:28171..28897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig899 28172..28897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig899.16843.1

>prot_H-paniculata_contig899.16843.1 ID=prot_H-paniculata_contig899.16843.1|Name=mRNA_H-paniculata_contig899.16843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=242bp
MKNVSSLTAPNVCKQAYLPEREVWSLPRLQTGGCRPRSATSPECGGLLGV
DPAESADRTPGGPDDQDIKGSAPLPCGRGGDANCATSDHHPYRIYPMGRE
RAGRRGRAAAAAPHRSFGGARLCRPELSIATREAKILVNTLTFTSSRGAF
TSQSGVGRPPEVYGPFGGLEARDCTLARCRTMTGQGGALACLLVQLFDHS
RTTRASKYVAMPRRFVGIEPNMITKCPCHGAIDIDTDDAHM*
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mRNA from alignment at H-paniculata_contig899:28141..29362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig899.16843.1 ID=mRNA_H-paniculata_contig899.16843.1|Name=mRNA_H-paniculata_contig899.16843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1222bp|location=Sequence derived from alignment at H-paniculata_contig899:28141..29362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTGAACCTCGATCAGCCGGCAGGGGCCGATGAAGAATGTTTCTTCTC
TCACGGCCCCCAACGTATGCAAACAGGCCTACCTACCGGAGCGAGAGGTC
TGGAGCTTGCCTCGGCTTCAAACCGGCGGCTGTCGGCCTCGATCGGCAAC
CTCGCCAGAATGCGGCGGACTTCTCGGGGTCGATCCGGCAGAGAGTGCAG
ACCGAACCCCCGGCGGCCCCGATGATCAAGACATCAAGGGAAGTGCACCG
TTGCCTTGCGGACGGGGGGGGGATGCCAACTGCGCAACAAGCGATCATCA
TCCCTACAGGATTTATCCAATGGGCAGGGAGAGAGCGGGACGCAGAGGGC
GCGCTGCCGCCGCCGCCCCCCATCGGAGTTTTGGTGGGGCACGACTCTGC
AGGCCTGAGCTCTCGATAGCTACAAGGGAAGCTAAAATACTGGTGAACAC
TTTGACGTTCACTAGTTCGCGTGGTGCGTTCACCAGTCAGTCGGGGGTTG
GCAGGCCACCGGAGGTGTATGGTCCTTTCGGGGGATTAGAGGCACGTGAT
TGCACTCTAGCACGCTGCCGGACCATGACGGGACAAGGTGGCGCCCTGGC
GTGCCTGCTAGTCCAACTTTTCGATCATTCCCGGACAACACGTGCCAGCA
AGTACGTGGCCATGCCGCGACGATTCGTGGGTATAGAGCCCAACATGATC
ACGAAGTGTCCTTGCCACGGGGCGATTGACATCGACACAGATGATGCACA
CATGTAAACCAGGTCAGGATCCCACGTTGACCAGGACCAACTAATAGTGT
GTAGTAGAAGTGTAGGATGGGTTTTTTCTTTAAGATGAAGCGAGTTTTCA
CGACTTTCCCGATATTACGTGCCGAATCAAGCATGACTCGAACATAGTCG
GTGAAAGTGCATGGCACCAGCGTTCCTTGGGTGTTGGTATTTTTCATGTT
GGGTCCTTTGCTCCCGAGATATGAGCATATTCAACGCAGCAATCTAGTAG
CCGTTCATGGTTGCCCTTGATTTTCTGTTTTGCCCTTCCCTGACCTCAAT
TTCATCGGAAGTAGAGATATTCTATCCCTGTAGAAAATAATAATATTTCA
AGCTCATTGGGTTTTGGGGATTGAATATATTAGGCACATTGCAACTGAAT
TATTTTCATCGTCACGAAACAAGCGGTCATAAGCTTCTAGTACACATTGT
TAGCTGCTGGTGCATAGGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig899:28141..29362+

>mRNA_H-paniculata_contig899.16843.1 ID=mRNA_H-paniculata_contig899.16843.1|Name=mRNA_H-paniculata_contig899.16843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at H-paniculata_contig899:28141..29362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAATGTTTCTTCTCTCACGGCCCCCAACGTATGCAAACAGGCCTA
CCTACCGGAGCGAGAGGTCTGGAGCTTGCCTCGGCTTCAAACCGGCGGCT
GTCGGCCTCGATCGGCAACCTCGCCAGAATGCGGCGGACTTCTCGGGGTC
GATCCGGCAGAGAGTGCAGACCGAACCCCCGGCGGCCCCGATGATCAAGA
CATCAAGGGAAGTGCACCGTTGCCTTGCGGACGGGGGGGGGATGCCAACT
GCGCAACAAGCGATCATCATCCCTACAGGATTTATCCAATGGGCAGGGAG
AGAGCGGGACGCAGAGGGCGCGCTGCCGCCGCCGCCCCCCATCGGAGTTT
TGGTGGGGCACGACTCTGCAGGCCTGAGCTCTCGATAGCTACAAGGGAAG
CTAAAATACTGGTGAACACTTTGACGTTCACTAGTTCGCGTGGTGCGTTC
ACCAGTCAGTCGGGGGTTGGCAGGCCACCGGAGGTGTATGGTCCTTTCGG
GGGATTAGAGGCACGTGATTGCACTCTAGCACGCTGCCGGACCATGACGG
GACAAGGTGGCGCCCTGGCGTGCCTGCTAGTCCAACTTTTCGATCATTCC
CGGACAACACGTGCCAGCAAGTACGTGGCCATGCCGCGACGATTCGTGGG
TATAGAGCCCAACATGATCACGAAGTGTCCTTGCCACGGGGCGATTGACA
TCGACACAGATGATGCACACATGTAAATGAAGAATGTTTCTTCTCTCACG
GCCCCCAACGTATGCAAACAGGCCTACCTACCGGAGCGAGAGGTCTGGAG
CTTGCCTCGGCTTCAAACCGGCGGCTGTCGGCCTCGATCGGCAACCTCGC
CAGAATGCGGCGGACTTCTCGGGGTCGATCCGGCAGAGAGTGCAGACCGA
ACCCCCGGCGGCCCCGATGATCAAGACATCAAGGGAAGTGCACCGTTGCC
TTGCGGACGGGGGGGGGATGCCAACTGCGCAACAAGCGATCATCATCCCT
ACAGGATTTATCCAATGGGCAGGGAGAGAGCGGGACGCAGAGGGCGCGCT
GCCGCCGCCGCCCCCCATCGGAGTTTTGGTGGGGCACGACTCTGCAGGCC
TGAGCTCTCGATAGCTACAAGGGAAGCTAAAATACTGGTGAACACTTTGA
CGTTCACTAGTTCGCGTGGTGCGTTCACCAGTCAGTCGGGGGTTGGCAGG
CCACCGGAGGTGTATGGTCCTTTCGGGGGATTAGAGGCACGTGATTGCAC
TCTAGCACGCTGCCGGACCATGACGGGACAAGGTGGCGCCCTGGCGTGCC
TGCTAGTCCAACTTTTCGATCATTCCCGGACAACACGTGCCAGCAAGTAC
GTGGCCATGCCGCGACGATTCGTGGGTATAGAGCCCAACATGATCACGAA
GTGTCCTTGCCACGGGGCGATTGACATCGACACAGATGATGCACACATGT
AA
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