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Homology
BLAST of mRNA_H-paniculata_contig8982.16833.1 vs. uniprot
Match: D7FY50_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY50_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.250e-25 Identity = 83/189 (43.92%), Postives = 105/189 (55.56%), Query Frame = 2
Query: 128 QSAMDRALLRRDADETLLNDDYEPPGDVIGNSVQEDKRDEDVVEWIVEMLARAPADRVWRRRGWLAMLNARRRR------------SMVDAATTAAAKQLQSLSKSPSAGPPKPDDGQLLLRGADAGEEGVTPPRVSRMRMAGVEWGGEVGHV-----VHPSLMKFHSTVAKLVDVTDELVFRRIVSFL 643
Q A R LLR +ADE N+D P DV+G++V DKRDE+VVEWI EMLARAPADRVWRRRGWLAML ARR R S + A++ Q+ S+ P DG + + A PP VSR +++ G VHPSL +FH V ++D DELVFR+IV++L
Sbjct: 282 QPACVRTLLRHNADEVFRNEDLAFPDDVVGHAVAGDKRDEEVVEWIYEMLARAPADRVWRRRGWLAMLRARRHRESEAEQIVHPQQSKEEQGEGGNAREAQNNSQ--------PGDGVMGVVCA--------PPSVSRRKLSIGAGEGTTDRDYSAVRVHPSLRRFHWNVTTMIDTADELVFRKIVTYL 454
BLAST of mRNA_H-paniculata_contig8982.16833.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 7.520e-7 Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 2
Query: 125 GQSAMDRALLRRDADETLLNDDYEPPGDVIGNSVQEDKRDEDVVEWIVEMLARAPADRVWRRRGWLAMLNAR 340
G +A LLR ADET+ ++D P VIG + +R ED+V I EML RAPADR WRRRGWL ML R
Sbjct: 112 GHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAEDIV-LIREMLRRAPADRAWRRRGWLVMLRNR 182
BLAST of mRNA_H-paniculata_contig8982.16833.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 2.560e-5 Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 2
Query: 149 LLRRDADETLLNDDYEPPGDVIGNSVQEDKRDEDVV---EWIVEMLARAPADRVWRRRGWLAM 328
LLR ADET ND+ + P DVIG + D DEDV + I MLARAPADR WRRRGWL +
Sbjct: 370 LLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVL 432
BLAST of mRNA_H-paniculata_contig8982.16833.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 4.710e-5 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 2
Query: 125 GQSAMDRALLRRDADETLLNDDYEPPGDVIGNSVQEDKRDEDVVEWIVEMLARAPADRVWRRRGWLAMLNA 337
G + + +LLR ADET+ N D+IG V+E+ R + VE + E+LA APADR WRRRG+L M A
Sbjct: 258 GAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRA 328
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 122.5 |
| Seed ortholog evalue | 1.9e-25 |
| Seed eggNOG ortholog | 2880.D7FY50 |
| KEGG ko | ko:K21440 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-24_003790.1 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Exons | 3 |
| Model size | 1852 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8982.16833.1 >prot_H-paniculata_contig8982.16833.1 ID=prot_H-paniculata_contig8982.16833.1|Name=mRNA_H-paniculata_contig8982.16833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MDRALLRRDADETLLNDDYEPPGDVIGNSVQEDKRDEDVVEWIVEMLARA
PADRVWRRRGWLAMLNARRRRSMVDAATTAAAKQLQSLSKSPSAGPPKPD
DGQLLLRGADAGEEGVTPPRVSRMRMAGVEWGGEVGHVVHPSLMKFHSTV
AKLVDVTDELVFRRIVSFL* back to topmRNA from alignment at H-paniculata_contig8982:6032..9984- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8982.16833.1 ID=mRNA_H-paniculata_contig8982.16833.1|Name=mRNA_H-paniculata_contig8982.16833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3953bp|location=Sequence derived from alignment at H-paniculata_contig8982:6032..9984- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACTCTGTTCTGTTGAAGGAAAGGTGTACATGTTTGGGCAAATACCT
GGATGTGGAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCGGGGGTTGA
AAAAAAAAAATAAAATGGCCCGATGGTCAGTCGGCCATGGACAGGTACGC
CGCGCGGGATTATCCGCCGGATAGCTTTTGAACCCTGATAGTTGTGAGTG
CTTCAGTCGCAGGCAAGTGTAGCGGCCTGAGCAGCCTCTAGATTCTGTCC
TCTATTGACCTATCAATGGTTGGTTTTCTCGGCGGGGTAAAAAAATGCGC
TTTTTATATATTTGTTTTACCTACAGTCGTGACTTCCAAGAGAAAAGAGG
GAAAAATAGATATAAAGATTATATATTGTGTCTTTGCAATTTTGCCACCC
TCAATGAATGCCCCTATCATCCTTCCCGCCCTCCCTATCTCAGAGCGCTG
CTACGCCGGGACGCAGACGAGACACTGCTCAACGACGACTACGAGCCACC
CGGCGACGTCATCGGCAACTCCGTCCAGGAGGACAAGCGAGACGAAGACG
TTGTAGAGTGGATCGTTGAAATGCTGGCGCGCGCGCCGGCCGACAGGGTC
TGGCGCAGGCGTGGCTGGCTGGCTATGTTGAACGCGCGAAGGCGAAGAAG
TATGGTGGACGCCGCTACCACAGCTGCTGCGAAGCAGCTGCAGTCGCTGT
CAAAATCGCCGAGCGCAGGGCCACCAAAACCGGATGATGGCCAACTGCTG
CTGCGAGGGGCAGATGCAGGGGAAGAGGGTGTGACCCCCCCTAGGGTTTC
AAGGATGAGGATGGCCGGGGTTGAGTGGGGCGGTGAGGTTGGCCATGTCG
TGCACCCGAGCCTAATGAAGTTTCACTCGACGGTGGCAAAGCTGGTTGAC
GTCACGGACGAGCTGGTATTCCGAAGGATCGTGTCCTTCCTTTGAGAGAG
TTCGAGAATTACCGGGTCGGGCCGGTCGCCCTCAACACCTTGTGAGTTTT
CGTCGGAATCGGCGTGCTAAAATGGACGGGTGTGGGGGTAGGCGTTGTAT
GGTTTGTGTACTGTGGTTGTTAGACGTTTAACCATGAGTCCTTGAGAGGC
CGGAGCTTGTTTCGATCGAGATCATCATCCTAATTCCGGCTTTTGGAGTC
GCTCTTTCCTACGATGCCTGCTGTTCCTCAAATTTGTTTTTTTACTTCAA
GTATCCTGTTTTATCTGTTAGACCTCGCTGTTTCGAGTCACTTTTTGTTA
CCTAGAATCCCGGGTGCGGTCGCTCTTCGAGGCACTGCCTGAATTGTTGA
CATGAACATTCTTGCTGCATGAATTATGCTGATTGCTGTTGAGCATTTCA
CACCTCGGATGAAAGAGCAATCCGACGAACATTCTGATCTTTATCGACCT
CCATCCCTATGGCCAGGAAGTCTCTGCCGTTCAGCTAATTATGAAACTAG
AAAATGAACGGGGAATGGCTGACGGACAGCTGATTACGAACCCCCCCAAA
TCGATGTAAGGCGATGACAAAGCCAGCAGCTTATTACAAAAACCAAAGTA
TAGATCAAGATCTGTTGGGCAGCTAATGATGAAAAGCGATTTGGGCATGA
AGACGGCATAGCTGGAACTTTACCGCTCCGTCATTCGAGGTGTGGGGTAT
TTCGTGTTTCGACTTGTACGTGGGGAGAGGTTTGTCGGCTTTCGTGAACA
ACCGTTTTCAATCCCCAATCAACCAAACAAGGGTGAGGCGTAGCTGCTGG
CCCTCTGCGAAAATGGGTAACCCCCTAGAGTGGGACGAGACAGATGTTTC
GCCATGAAATCAATGAGAAAAATAAATAAATAAAATGATAATGCAATGGT
AGGGGTTGCTATCTCGGATATACCAGTATGTGTTTTTTTATTTCATGTTT
GGAGCAGTGCGATCAACGAAGATACCAATGCGTGCGCACTGATTATATAT
ATTGTTTTCGTGATTTGCACTTGATTTCACTGGATGTTTGGTTTATTCGA
CTAGGCGGAAGAAAAATTCACCAAATTTAATTCAGGGAGAAATAAGTGAG
GTTTGCCTTCGGTCGAGATGAATCTAGTCGCCAGGTATATTCCGAAATCA
GTCCGCTACTACTTTCTGGGGGCGCGGCGATTTGAACACTCGGGGTACTC
GAAGAGTTCGGACATATTTCAATGTAGCCGCAAGTATATCTAGAGCAGAC
GGTTGCGGTGTGTGGGTGGTTTGACCCTAACCTCTAAATTTTTTTGAAAG
TGCGCTTGAAAGCCGATTGATTGCCCGCATCGCCGCTGCTGCCCCGACTG
ACAACGTGGAGAAGGAATCTTACGTGTATGGCATGGTATTTCGTTATCAT
CTGCGTTAGTGGGCTCGCTGTGTCGTTCTCCGGAACGTAAATCCATTTCT
TCTGGGTGTTGGATTCCATTCCCCTCGGAAACTTGATTTTGTGACATTGC
GACTTAACCAGCTAGATAGCGCGACATTTCGTGCCCGTAGATTTGCTGTG
TTCTTAGAAGGAGCCATTTGATTGGCAAAAAAAAAATCAGTGGTCGAGTC
ATGTCATTGATGTTCTTGACATCGTGTTTGGAGCGGAAGACTTTCGTTAT
GCATGACGTCGTATTTGTAAGTACATACACATTTAAGTGGCTTAGTGAGC
GTAGAATCCGATGACTCAGATATTACCGTTCTGACATCCATAAGGAATGG
GGGAAAAATTGTTTTGAAGTGGCCCGAGAGCGATTGATTGATTGGTTAAG
TGACTGACCCCTCGTGCGCGTTTTGGTTTGCTTGTGTTGGCAGGTGCAGC
TTGAAACGTTTTGGAGAACAGGGGCCGACCGAGGGCGGGCGTCATCGATA
CTGTGCGGCTTCTCTGTGCCCCTCCCCTCCCCGACGTTGCTTTCCCCTTT
TGGATATCTTGGAGGATGACCTACAGATAGGATTAGCGTGGTGTACAGAG
TGTATCACCCCAGAGTTGAACATAGTGGTTCGACCTCGAGTTTCTCGAAT
TTGCGGTGCTCGTGGCTCTTGAAGTTGTGTCATCGTAGATACGATCTCTT
GGAGATTTGTCATTAGATAGACATGATATTTTGAAACTGCAGATTCTTGA
TGAAAAAATTGAGTTTTAGTTTATCTATCTACGTATCTATTTAAATACAT
TTGTACATAATGCCAACTATTGTACCCTGTATACTACGTTACAAGGATGT
AGGTGTCTTGACCATTTTCAGAGGCGTTTTGTGTTGTAGATTCAGAACAT
GCGGCAGTGATCCGCAGAATGGATTCGCTTTATTCATCTTGTACGTCGAA
TGGTAACATGTTGGATCTTACAAATTTGCACTGTACTTAAATGCCGCTTA
ATTTTTTTTATTTATTGTTGGCGGATGACTAAATACTTTGGTTTTTAGTG
AACGGTATTGTGTTTTCGGGTCGGGGTAACTCTTTTAGTTTGAGCTGTGG
CTGTAGCTGGGACTCGGGAGAAATGGATGTCATATGTCTTCCTTTAAGAA
GTGTGTCTACGAAGGGGTGTGTTACCCACCGAAGTCTGTACGAGGATTTA
CAGGGGGAAAGTGTTTCTTTTGGCGTGTTGAAATTATGGGCATGTGGCAT
GTGGGTCTCGTGACCGCCCTAACTGGGTTGATTTTCTTTTTTTATTGTCT
AGGGAGGCGTTTCTAGAATTGATTGGCATGCAGTAATGTCAACGCCCCTG
CGGTTGACGCGTGTCCTCCTTTTATGTTCCAATATCGTCATTTTTTTTAT
ACTTCAATTTTGTTCTGGTAGTCTGCCGGATGGAAATTTGTGTTCGATAA
TATGAAGTGGCGCACCACTACTTACTTACTTTCGGTGTACAGTGGCTCAT
TAGAATGAGCGTAGTGTCGAGGTTTGTTAAATAGCTATTGGCTACAACGA
CTAATTTTATTTCCTGGCCGACTCAAGCGGAAATCGTGTAACATCGTTAT
AAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig8982:6032..9984- >mRNA_H-paniculata_contig8982.16833.1 ID=mRNA_H-paniculata_contig8982.16833.1|Name=mRNA_H-paniculata_contig8982.16833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig8982:6032..9984- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGATGGACAGAGCGCTGCTACGCCGGGACGCAGACGAGACACTG
CTCAACGACGACTACGAGCCACCCGGCGACGTCATCGGCAACTCCGTCCA
GGAGGACAAGCGAGACGAAGACGTTGTAGAGTGGATCGTTGAAATGCTGG
CGCGCGCGCCGGCCGACAGGGTCTGGCGCAGGCGTGGCTGGCTGGCTATG
TTGAACGCGCGAAGGCGAAGAAGTATGGTGGACGCCGCTACCACAGCTGC
TGCGAAGCAGCTGCAGTCGCTGTCAAAATCGCCGAGCGCAGGGCCACCAA
AACCGGATGATGGCCAACTGCTGCTGCGAGGGGCAGATGCAGGGGAAGAG
GGTGTGACCCCCCCTAGGGTTTCAAGGATGAGGATGGCCGGGGTTGAGTG
GGGCGGTGAGGTTGGCCATGTCGTGCACCCGAGCCTAATGAAGTTTCACT
CGACGGTGGCAAAGCTGGTTGACGTCACGGACGAGCTGGTATTCCGAAGG
ATCGTGTCCTTCCTTTGAAGCGCTGCTACGCCGGGACGCAGACGAGACAC
TGCTCAACGACGACTACGAGCCACCCGGCGACGTCATCGGCAACTCCGTC
CAGGAGGACAAGCGAGACGAAGACGTTGTAGAGTGGATCGTTGAAATGCT
GGCGCGCGCGCCGGCCGACAGGGTCTGGCGCAGGCGTGGCTGGCTGGCTA
TGTTGAACGCGCGAAGGCGAAGAAGTATGGTGGACGCCGCTACCACAGCT
GCTGCGAAGCAGCTGCAGTCGCTGTCAAAATCGCCGAGCGCAGGGCCACC
AAAACCGGATGATGGCCAACTGCTGCTGCGAGGGGCAGATGCAGGGGAAG
AGGGTGTGACCCCCCCTAGGGTTTCAAGGATGAGGATGGCCGGGGTTGAG
TGGGGCGGTGAGGTTGGCCATGTCGTGCACCCGAGCCTAATGAAGTTTCA
CTCGACGGTGGCAAAGCTGGTTGACGTCACGGACGAGCTGGTATTCCGAA
GGATCGTGTCCTTCCTTTGA back to top
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