mRNA_H-paniculata_contig8971.16828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8971.16828.1
Unique NamemRNA_H-paniculata_contig8971.16828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Match: A0A6H5KXP9_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP9_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 5.720e-68
Identity = 106/153 (69.28%), Postives = 131/153 (85.62%), Query Frame = 1 
Query:    1 WWHRYEAETISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDALLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSECIWVVFKMFDEGRDGRLQYEELLSATRDRVRRLPGQRESRDSLSQFMHCVRGD 459
            WW RY+ +TIS+ADLALTLVST HPRK+PV LARVQA++KKR Q+PLRDALLLHE+LEDHAQDLEDAL +Y KAS G AV   DFARAAKV+SG++LS EC+W+VFKMFD G DGRL+++EL+ AT  R+R LPG+RE  +S+++F+ CVRGD
Sbjct:   76 WWSRYKNDTISMADLALTLVSTSHPRKMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTATDFARAAKVISGKELSPECVWLVFKMFDSGADGRLEHDELIEATHHRLRSLPGRREFPNSVARFVQCVRGD 228
[Close]
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Match: A0A2D4BZW7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZW7_PYTIN)

HSP 1 Score: 71.6 bits (174), Expect = 5.680e-10
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 1 
Query:   28 ISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDALLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSECIWVVFKMFDEGRDGRLQYEELLSATRDRVRRLPGQRESRDSLSQFMHCVR 453
            ISV D A+TLVS   P +L   L RV+AL      V   D    H  ++++  D+  A  L    +    +  ADF RAA+VVSG +LS   + + F++FD   +G L   ELL     R      QR   + L +F+ CV+
Sbjct:  320 ISVHDFAITLVSGFDPDRLAPYLERVEALNASEELVTWEDFYKFHANVQNNLADIXLAFDL----THAEEITEADFIRAARVVSGVELSFPVVQLAFRVFDSNENGTLDQSELLKVLETRSTIELTQRPPENKLQRFVSCVK 457
[Close]
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Match: A0A484EGG9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG9_BRELC)

HSP 1 Score: 70.9 bits (172), Expect = 9.200e-10
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = 1 
Query:   22 ETISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDALLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSECIWVVFKMFDEGRDGRLQYEELLSATRDR-VRRLPGQRESRDSLSQFMHCVR 453
            +T+SV D ALTL+S   P+KLP  L RVQAL      V   +    H  ++ +  D++ A  L    +    +  A+F RAA++VSG +LSS  + + F++FDE  +G L   EL    + R    L  +   R  L +   CV+
Sbjct:  278 QTVSVHDFALTLISGHDPKKLPPYLDRVQALNACDDVVTWDEFCTFHFNVQHNLPDIKLAFEL----TGADEITEAEFIRAARIVSGVELSSPVVELAFRIFDENGNGTLDRSELFEGLKMRNTVELKQKSSGRSQLGKLWQCVK 418
[Close]
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Match: A0A5D6XI39_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI39_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.170e-9
Identity = 48/144 (33.33%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   22 ETISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDALLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSECIWVVFKMFDEGRDGRLQYEELLSATRDRVRRLPGQRESRDSLSQFMHCVR 453
            E +SV D A+TLVS   P +L   L R+QAL   +  V   D    H  ++ + +D++ A  L   A     +  ADF RAA+VVSG +LS   + + F++FD   +G L   ELL     R      +++    + +F  CVR
Sbjct:  291 EVVSVHDFAITLVSCFDPERLAPYLERLQALNASQELVTWDDFYKFHFNVQSNLEDIKLAFDLIGAAE----ITEADFIRAARVVSGVELSFPVVQLAFRVFDGNDNGTLDQTELLKVLEMRRDIELEKKQPATYVKRFWSCVR 430
[Close]
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Match: D0NKW5_PHYIT (EF-hand domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKW5_PHYIT)

HSP 1 Score: 65.1 bits (157), Expect = 7.660e-8
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:   16 EAETISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDALLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSECIWVVFKMFDEGRDGRL 351
            + +T+SV D ALTLVS   P KLP  L RV  L      V   +  + H  ++ +  D++ A  L    +    +  ADF RAA+VVSG +LSS  + + F++FDE  DGRL
Sbjct:  298 QQQTMSVHDFALTLVSCFDPEKLPPYLDRVHELNASEGVVTWDEFFMFHFNVQSNLPDIKLAFEL----TGADEITEADFIRAARVVSGVELSSPVVQLAFRIFDE--DGRL 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8971.16828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KXP9_9PHAE5.720e-6869.28EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2D4BZW7_PYTIN5.680e-1034.51Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A484EGG9_BRELC9.200e-1033.79Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6XI39_9STRA7.170e-933.33EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
D0NKW5_PHYIT7.660e-839.29EF-hand domain-containing protein n=2 Tax=Phytopht... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8971contigH-paniculata_contig8971:5614..8307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog67593.Physo138802
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand domain pair
EggNOG OGs3QBVN@4776,KOG2643@1,KOG2643@2759
COG Functional cat.P
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1145
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8971.16828.1prot_H-paniculata_contig8971.16828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8971 6297..8307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.7154665-UTR-H-paniculata_contig8971:5613..62961622931120.7154665-UTR-H-paniculata_contig8971:5613..6296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8971 5614..6296 -
1691481599.572361-UTR-H-paniculata_contig8971:5613..62961691481599.572361-UTR-H-paniculata_contig8971:5613..6296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8971 5614..6296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.7501504-CDS-H-paniculata_contig8971:6296..65121622931120.7501504-CDS-H-paniculata_contig8971:6296..6512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 6297..6512 -
1691481599.5889595-CDS-H-paniculata_contig8971:6296..65121691481599.5889595-CDS-H-paniculata_contig8971:6296..6512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 6297..6512 -
1622931120.7672644-CDS-H-paniculata_contig8971:6989..71031622931120.7672644-CDS-H-paniculata_contig8971:6989..7103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 6990..7103 -
1691481599.6021605-CDS-H-paniculata_contig8971:6989..71031691481599.6021605-CDS-H-paniculata_contig8971:6989..7103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 6990..7103 -
1622931120.7837365-CDS-H-paniculata_contig8971:8175..83071622931120.7837365-CDS-H-paniculata_contig8971:8175..8307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 8176..8307 -
1691481599.610339-CDS-H-paniculata_contig8971:8175..83071691481599.610339-CDS-H-paniculata_contig8971:8175..8307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8971 8176..8307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8971.16828.1

>prot_H-paniculata_contig8971.16828.1 ID=prot_H-paniculata_contig8971.16828.1|Name=mRNA_H-paniculata_contig8971.16828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
WWHRYEAETISVADLALTLVSTCHPRKLPVQLARVQALKKKRSQVPLRDA
LLLHEILEDHAQDLEDALALYCKASPGAAVGPADFARAAKVVSGQDLSSE
CIWVVFKMFDEGRDGRLQYEELLSATRDRVRRLPGQRESRDSLSQFMHCV
RGD*
back to top

mRNA from alignment at H-paniculata_contig8971:5614..8307-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8971.16828.1 ID=mRNA_H-paniculata_contig8971.16828.1|Name=mRNA_H-paniculata_contig8971.16828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2694bp|location=Sequence derived from alignment at H-paniculata_contig8971:5614..8307- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGGCACCGGTACGAGGCGGAGACGATTTCTGTGGCGGATTTGGCGCT
GACGCTGGTGTCGACTTGCCACCCGAGAAAGCTTCCGGTGCAGCTGGCGA
GGGTGCAGGCCCTCAAGAAGAAGCGATCGCAGGTTGGATTTGTTTTTTTG
TCCAGTTTCTTGGAGTTTTTCAGTAGTATTATTAGTACTATTGTCAGTAT
TATTATTAGTAGTAGTAGTATTATTAGTACTATTATCAGTATTATTATTA
CTAATAATAATACTACTACTAATAATAACTTGACTGTACGCATGTTCGAG
TTACGTAGCTGAATTAAAACTTCAGTTTGCTTACGCTTATCAGCGCAGTA
AGATCCCTAGGGGGAGGGCGTGCTGAGGTAGGTTATGCAGCCCAGAGGAA
ATCAAAGCTTCGTGCACTTATCATAGCAGCTAAATTAGAGCTCACAATTG
GGGGCGAAGAGGCTTAGGGTCCTCACATAATATTTTCATTCTGTACAGCT
GGCGATGGGTGTAGAGCTAGCAAGAAGGAAGCGATCGCAATTTATATGTT
ATTGGTAAACCACCCGTGCGCCCGCGGTGTTTTTGGGGTGGTTACGAAGG
AGCGGGTCGCAGTTTGTTTTCGGTCAGCTGCTGTGTAGCGTGACAGATCG
CCGGTTGTGGTGGATCGCTCACCTGTTGAGAGCACAATCACAAACGTTTT
GGCGTGCCCTTGCACTCCCCCCCGGCTTGATCGGTTTGTGTTGTGTTGTC
CCCCGTTCAAAGTTGTTTCGGCTATGCAATCGACTACGACCAGTACACAG
TACACCTCTGTTGGTCATGAAGACATGCAGTCATGATAGTGGGCTACAGA
ACCTCGGCACGATATGTCTGTGCACTACAAACTATTAGTATTGTATTGTG
ACAAACTCATCAAACGGGCTGTGATCTGTTCGTGGTGGTTTACAGATGAA
CAAGTACCCTCCGTGCCTTCCTATTGATGTAATTTTACTCATAAGTGTAC
GCAACTGACGTTTGAGGTCAGCTATATAACCCCAACATGGGTACGGTGGG
GTTATAATATCTCCGCCTTCCTCCCCTCCGAGGCGAAGACAACTCCGTAG
GACCAAAAAATGTTGCAATGGTGTGCCATGTCGGAGCAGAAGTATTGCCG
ACTCTACGCGTCTGCTGCTATTTTTTTTCTCTGCTTTTTTTAATGCTGTG
GTAGGTGCCCCTTCGGGATGCCCTGCTCTTGCACGAGATTTTGGAGGATC
ATGCACAGGACTTGGAGGATGCTCTGGCGTTGTACTGCAAGGCCTCGCCA
GGAGCGGCAGTGGGGCCGGTGAGAGACGGCGAGAACGAAGCGACAATATG
GGGGCAGATGCATATGCAGGGAGAGACAGACAGACATACAGACAGACACA
GACAGAGAGAGACAGACACACAAGAGACACAACCAGAGACAGACACACAC
ACAGACAGAGAGGCGGACGTGCCTGAGACATGACCTCGAAAGCATATCAA
GGGGTTTCTGGTATTTGCTTCCACCATGCATACTCGTAGGTGGGCTTAAT
AATAATGCCATTGGTGTATGCAACACGCAAAAATCAAGGAGCTTTTCTTA
TATGAGTTTTATAGGCGACTTACTGTGGCTAGTGGGTTGGCTCATGAACA
AATATCGGTGGGTATTCTCGAAAATGTTATTTTATTTTATTTTATTTTAT
TTATGCGAGCTTTCCTACCCCCCGAAACACACGAAATAAGATACCCAAAT
CTGACACAACCGTGCTATCGTTGCGTTGTTTGCTGCGGGAAACAGGCAGA
TTTCGCGCGCGCTGCGAAGGTCGTATCGGGGCAAGACCTAAGCTCTGAGT
GCATCTGGGTGGTGTTCAAGATGTTCGACGAGGGACGAGACGGGCGGCTT
CAGTACGAGGAGCTGCTTAGCGCGACCAGAGACAGGGTTCGGCGCCTTCC
GGGGCAGAGAGAGTCGCGCGACAGCCTGAGTCAATTCATGCATTGTGTCC
GTGGCGACTGATATGTTCTCAAGTAGGGCTGAAGTCACCGTAATAAGAGT
GTATTGTTGCAGCTGCCGTCACATCGATTCAGCGCATGCAAGCAGTTCTT
CCTGGTAATGGCTTTCTTTCTCTTGTCATGGTACTGGGGGTGTTAGTATG
TGGCAGTACTGACCGTTGGCAGTAGGTGACATTAAACAAAACAGAGAAAA
ACGGGTTCGACGATCGAGATGGATGTAGTAAATACATCAGACGGAGGCTA
AGAGTAGTACATAGTGTGTTGTGAAATGAACAAGCTTTGATTGCCACGGG
TGAGAGAGTGAGTCCGTTTGTTTCAACGGGGAGGAGGGTTGGTTGGTGGA
TGAATATAATGTACGTTTTCCCTCCAGTAATGGCTTGCTATTGGTTTGTT
GCGTCTTGAATTGGAATGTGATACGAGGATGACAGTACCTTATTACGGTA
CTACAACACATTGTGTACCTTGTACATTTGTTGTAGTGTTGTACTATGAT
CTAGAAATGCCGCCCAAAGTTGGGGTTTTGGGTTATTGAGTGACAGTTCA
ACTGAGAACCCCGCGGTTGAAAGATTTGTGGACAATCGAACACACCAAAA
GTTCCATCCAGCATGAGGACATTTGCGCCATCATGTGCCCTGAAATATGT
ACGATTTAAGTAGAGGGAACACGAATAAACACGGTTTATATATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8971:5614..8307-

>mRNA_H-paniculata_contig8971.16828.1 ID=mRNA_H-paniculata_contig8971.16828.1|Name=mRNA_H-paniculata_contig8971.16828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig8971:5614..8307- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGGCACCGGTACGAGGCGGAGACGATTTCTGTGGCGGATTTGGCGCT
GACGCTGGTGTCGACTTGCCACCCGAGAAAGCTTCCGGTGCAGCTGGCGA
GGGTGCAGGCCCTCAAGAAGAAGCGATCGCAGTGGTGGCACCGGTACGAG
GCGGAGACGATTTCTGTGGCGGATTTGGCGCTGACGCTGGTGTCGACTTG
CCACCCGAGAAAGCTTCCGGTGCAGCTGGCGAGGGTGCAGGCCCTCAAGA
AGAAGCGATCGCAGGTGCCCCTTCGGGATGCCCTGCTCTTGCACGAGATT
TTGGAGGATCATGCACAGGACTTGGAGGATGCTCTGGCGTTGTACTGCAA
GGCCTCGCCAGGAGCGGCAGTGGGGCCGGTGCCCCTTCGGGATGCCCTGC
TCTTGCACGAGATTTTGGAGGATCATGCACAGGACTTGGAGGATGCTCTG
GCGTTGTACTGCAAGGCCTCGCCAGGAGCGGCAGTGGGGCCGGCAGATTT
CGCGCGCGCTGCGAAGGTCGTATCGGGGCAAGACCTAAGCTCTGAGTGCA
TCTGGGTGGTGTTCAAGATGTTCGACGAGGGACGAGACGGGCGGCTTCAG
TACGAGGAGCTGCTTAGCGCGACCAGAGACAGGGTTCGGCGCCTTCCGGG
GCAGAGAGAGTCGCGCGACAGCCTGAGTCAATTCATGCATTGTGTCCGTG
GCGACTGAGCAGATTTCGCGCGCGCTGCGAAGGTCGTATCGGGGCAAGAC
CTAAGCTCTGAGTGCATCTGGGTGGTGTTCAAGATGTTCGACGAGGGACG
AGACGGGCGGCTTCAGTACGAGGAGCTGCTTAGCGCGACCAGAGACAGGG
TTCGGCGCCTTCCGGGGCAGAGAGAGTCGCGCGACAGCCTGAGTCAATTC
ATGCATTGTGTCCGTGGCGACTGA
back to top