mRNA_H-paniculata_contig8962.16821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8962.16821.1
Unique NamemRNA_H-paniculata_contig8962.16821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8962.16821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8962contigH-paniculata_contig8962:673..3529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size938
Cds size936
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8962.16821.1prot_H-paniculata_contig8962.16821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8962 673..3529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.8485522-CDS-H-paniculata_contig8962:672..7671622931119.8485522-CDS-H-paniculata_contig8962:672..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 673..767 +
1691481599.213348-CDS-H-paniculata_contig8962:672..7671691481599.213348-CDS-H-paniculata_contig8962:672..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 673..767 +
1622931119.8694522-CDS-H-paniculata_contig8962:2134..24091622931119.8694522-CDS-H-paniculata_contig8962:2134..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 2135..2409 +
1691481599.227854-CDS-H-paniculata_contig8962:2134..24091691481599.227854-CDS-H-paniculata_contig8962:2134..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 2135..2409 +
1622931119.8854039-CDS-H-paniculata_contig8962:2963..35291622931119.8854039-CDS-H-paniculata_contig8962:2963..3529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 2964..3529 +
1691481599.2378345-CDS-H-paniculata_contig8962:2963..35291691481599.2378345-CDS-H-paniculata_contig8962:2963..3529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8962 2964..3529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8962.16821.1

>prot_H-paniculata_contig8962.16821.1 ID=prot_H-paniculata_contig8962.16821.1|Name=mRNA_H-paniculata_contig8962.16821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
RLEQEGPGLHPCPVCGKCFQRLGSHLKNKFAGNDGCKPQDKSHTPDGGIF
LCSFCKARIVSDYGAIREHALACVPGKAFAKETAKSKRAFLAVSSSSSLS
SSSPPSSLSSGSNASAGGVAGGGGPRPSATTTATATTTTTASSASSLSNP
TTPVIIKGTSVPVRSVDPSGRTATTTATTTTTTTTSISNSSTTTTTTTQP
PEDIITVSPGSPLLAAALATQRALAKGSARKPRPQTKTTNPAGSAGASAG
STAAASAAPAPNIGSGGRKSPPRSGCGSGGAAQTPAAAAAAAPQLKRRGG
TGGNGGGGGGAG
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mRNA from alignment at H-paniculata_contig8962:673..3529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8962.16821.1 ID=mRNA_H-paniculata_contig8962.16821.1|Name=mRNA_H-paniculata_contig8962.16821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2857bp|location=Sequence derived from alignment at H-paniculata_contig8962:673..3529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGGAACAGGAAGGACCCGGCCTCCACCCTTGTCCGGTCTGTGGCAA
GTGCTTTCAGAGGCTAGGTTCTCATCTGAAAAACAAGTTCGCCGGGTACG
ATAGAGTAGCGCGTAGCGTGGGTCAGCCCACACAGTGTGCTCATTTTTTT
TTTTTTTTTTGGGGGGGGGGAATATCAGCGGTGGGTCTTTGTACAGATTT
GTTTACGTTGGAAAATGATATATGGCACATATATGGAGATATTTGTCGTG
ATAATGTTCACGAGTGTCATGTTCCAAAATTGATCCACAGTGTAATCCTG
TTTGTTGGATGCCTCAACAGGCAACGAATACGTTTGGGAAATTGCGTTGA
TGGACTATGTTTATCGAAAAGGAGGAGGACCTGTAGAAATTTCCTGCTTG
ATACTCTTTTCAGGGTAAGGATTTTCTCCGCTGCAAAAAGCCCGGTGCTG
ATGAAAAAGAGCGAATATAATGATGAATGCGTGAAAGATCCAGGTTGAAG
GGTATGGCACACGCATTCACCGTTTCATTTGCTCTTGTGTACTACTATCA
ACGAATGAAAAAAAAAGTATTCTTCGTTGCCCGCAAATTCTAAAACTCGG
GCAAATACGTTTGAAGTTATGTCTCGTTGCAACTGCTCCTGACATTCGTG
TTTGTCCGGGTGGGGAGGGGGGTGAAATATTGAATAGTGACTGATCAATA
CAAAAGCGGCGTGACTTGTCAACCGGGGTTCGGAGATCAGTGGGTAGTTG
CTATCAATCTTTTCGGGAGGCAGCCCTCTGAGCTTTGCTTTCTGAAATCT
GTTTCTCTGGTATTTTTTTTTTTTTTCCATGTAATAGAAAAAAAATAGAA
AATAGGTTTGTATCAGACGTCGGAAGGCAATCCGTCGTAGATGTGTATTT
GGGCATTCAGATCTGCTTTTTGGGGCACTCCGTTGGAGCTACTCCAAAAA
TTGCTGATTTCAAGGCGATCGGATGTCAGTCTTGAACGATGTTTCAGAAA
GTACCGCGTCCGTCCCGAAGAGGTTGACCCGGATTTGATCTAATTTTTCC
GGTGAAGTGTAGACAAGTGAGCTTTTTATCAGCAGATGGATATTCATCTT
AACAGGGGTGCGATGGAGTTGTTGATAATATAGTGGCTTTGTGAGGCTAT
TACCGATGACTGTGGCAAGTGAGTTGAGTCCTTCCTTGCCTTATTTGGTC
TAATTCTGCTGATAAGCGTACGCAGCGAAAGTTTGAGGTAAGCTGTGATA
ATCTCAACGTGGATACGATGGAGCTATTTTCCACATGATATAGATCACGT
CTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCAATGCCTTATGATCTCT
GCGTATGGTGAAGCTATCTAATTTATTTGATACTGTTCCCGTGCGCGTTT
TTTTCCTCTTTTTTTTGTTCTCCACCGATGACTTGATCGATGTATCGATT
GATCCCATCTAGCAACGATGGCTGCAAGCCGCAGGACAAGAGTCATACGC
CGGATGGTGGCATCTTTCTCTGTAGCTTCTGCAAGGCGAGAATCGTCTCC
GATTACGGTGCCATCCGTGAGCACGCCCTGGCTTGCGTGCCGGGGAAAGC
CTTCGCCAAGGAAACAGCGAAAAGTAAGAGAGCCTTCTTGGCCGTGTCGT
CATCCTCCAGTTTATCCAGTTCCTCGCCACCGTCGTCATTATCCAGCGGG
AGTAACGCCTCCGCTGGAGGAGTAGCTGGCGGCGGTGGTAAGTTGTTGCT
GTTGCTGTTGCTGTTGCTGTGTTAAGAAGTACGAGTAACATGAGCCGTCC
AGTTGATGTCTGATTTATGAGGACAGTTGCTGATGCTGTTGCTGTTATTG
CGGACGTAGTTAGAGCGCATGTGCGCGTCGCCAACAGCGGTATTGTAGTG
TTGTTGTCGATATGTCTACTCGGCCGCCGTCCCTAGATATTTTTCATTTG
TTAAAAACTATAATCGGGATTTGTTCAAAGGCACTGGCTTCGTTTGTTTT
TATTTAATTCCAAAGCAACCTACCTAGATATTCATACGCGGATACATGAG
AGATCTATTTGTCTGATCTTACAATAATATATATATATATATATATATAT
CTTTCTATCTTCTGCACAGCATATACACTCACATATATATTTGTCTTTTG
ATTTTCCTCCTTTTTTTTTTTTCTTTTAAAATTACTATTACTATTACTAT
TACTATTACTATTACTATCATCGTTACTCATATTCTCCACATTACACCCC
TTCTGCAACAACATCATTGCCCATTATTCACATAACACCAGGTCCTCGAC
CTTCCGCCACCACCACCGCGACCGCTACTACCACCACCACAGCATCATCA
GCATCGTCATTATCCAATCCCACGACCCCGGTCATCATCAAGGGCACTTC
CGTCCCCGTCCGCAGCGTGGATCCCTCCGGCCGCACCGCCACCACCACCG
CCACAACCACCACCACCACAACCACCAGCATCAGCAACAGCAGCACCACC
ACAACCACCACCACGCAGCCCCCCGAAGACATCATCACCGTTTCCCCAGG
GTCCCCCCTGCTGGCAGCGGCCCTCGCCACGCAACGCGCTCTAGCCAAAG
GGTCAGCAAGAAAACCAAGACCACAGACGAAGACCACCAACCCCGCTGGC
TCTGCGGGAGCCAGCGCCGGCAGTACCGCAGCTGCCTCAGCAGCGCCTGC
CCCTAATATTGGCAGCGGGGGGAGGAAATCGCCCCCGCGATCGGGGTGTG
GCAGTGGCGGAGCGGCACAGACACCCGCGGCGGCGGCGGCGGCGGCACCA
CAGCTGAAGCGGCGGGGTGGTACTGGTGGTAATGGGGGTGGAGGCGGCGG
GGCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8962:673..3529+

>mRNA_H-paniculata_contig8962.16821.1 ID=mRNA_H-paniculata_contig8962.16821.1|Name=mRNA_H-paniculata_contig8962.16821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig8962:673..3529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGGAACAGGAAGGACCCGGCCTCCACCCTTGTCCGGTCTGTGGCAA
GTGCTTTCAGAGGCTAGGTTCTCATCTGAAAAACAAGTTCGCCGGAGGCT
GGAACAGGAAGGACCCGGCCTCCACCCTTGTCCGGTCTGTGGCAAGTGCT
TTCAGAGGCTAGGTTCTCATCTGAAAAACAAGTTCGCCGGCAACGATGGC
TGCAAGCCGCAGGACAAGAGTCATACGCCGGATGGTGGCATCTTTCTCTG
TAGCTTCTGCAAGGCGAGAATCGTCTCCGATTACGGTGCCATCCGTGAGC
ACGCCCTGGCTTGCGTGCCGGGGAAAGCCTTCGCCAAGGAAACAGCGAAA
AGTAAGAGAGCCTTCTTGGCCGTGTCGTCATCCTCCAGTTTATCCAGTTC
CTCGCCACCGTCGTCATTATCCAGCGGGAGTAACGCCTCCGCTGGAGGAG
TAGCTGGCGGCGGTGCAACGATGGCTGCAAGCCGCAGGACAAGAGTCATA
CGCCGGATGGTGGCATCTTTCTCTGTAGCTTCTGCAAGGCGAGAATCGTC
TCCGATTACGGTGCCATCCGTGAGCACGCCCTGGCTTGCGTGCCGGGGAA
AGCCTTCGCCAAGGAAACAGCGAAAAGTAAGAGAGCCTTCTTGGCCGTGT
CGTCATCCTCCAGTTTATCCAGTTCCTCGCCACCGTCGTCATTATCCAGC
GGGAGTAACGCCTCCGCTGGAGGAGTAGCTGGCGGCGGTGGTCCTCGACC
TTCCGCCACCACCACCGCGACCGCTACTACCACCACCACAGCATCATCAG
CATCGTCATTATCCAATCCCACGACCCCGGTCATCATCAAGGGCACTTCC
GTCCCCGTCCGCAGCGTGGATCCCTCCGGCCGCACCGCCACCACCACCGC
CACAACCACCACCACCACAACCACCAGCATCAGCAACAGCAGCACCACCA
CAACCACCACCACGCAGCCCCCCGAAGACATCATCACCGTTTCCCCAGGG
TCCCCCCTGCTGGCAGCGGCCCTCGCCACGCAACGCGCTCTAGCCAAAGG
GTCAGCAAGAAAACCAAGACCACAGACGAAGACCACCAACCCCGCTGGCT
CTGCGGGAGCCAGCGCCGGCAGTACCGCAGCTGCCTCAGCAGCGCCTGCC
CCTAATATTGGCAGCGGGGGGAGGAAATCGCCCCCGCGATCGGGGTGTGG
CAGTGGCGGAGCGGCACAGACACCCGCGGCGGCGGCGGCGGCGGCACCAC
AGCTGAAGCGGCGGGGTGGTACTGGTGGTAATGGGGGTGGAGGCGGCGGG
GCTGGGGTCCTCGACCTTCCGCCACCACCACCGCGACCGCTACTACCACC
ACCACAGCATCATCAGCATCGTCATTATCCAATCCCACGACCCCGGTCAT
CATCAAGGGCACTTCCGTCCCCGTCCGCAGCGTGGATCCCTCCGGCCGCA
CCGCCACCACCACCGCCACAACCACCACCACCACAACCACCAGCATCAGC
AACAGCAGCACCACCACAACCACCACCACGCAGCCCCCCGAAGACATCAT
CACCGTTTCCCCAGGGTCCCCCCTGCTGGCAGCGGCCCTCGCCACGCAAC
GCGCTCTAGCCAAAGGGTCAGCAAGAAAACCAAGACCACAGACGAAGACC
ACCAACCCCGCTGGCTCTGCGGGAGCCAGCGCCGGCAGTACCGCAGCTGC
CTCAGCAGCGCCTGCCCCTAATATTGGCAGCGGGGGGAGGAAATCGCCCC
CGCGATCGGGGTGTGGCAGTGGCGGAGCGGCACAGACACCCGCGGCGGCG
GCGGCGGCGGCACCACAGCTGAAGCGGCGGGGTGGTACTGGTGGTAATGG
GGGTGGAGGCGGCGGGGCTGGG
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