mRNA_H-paniculata_contig894.16809.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE) HSP 1 Score: 164 bits (415), Expect = 7.330e-46 Identity = 110/292 (37.67%), Postives = 136/292 (46.58%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGADLGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGT------------------------------------------------------------------------------------------------AQYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQGYAFVVFGGEDLPATLDL--ESDLTGSNG--MVFKGAITGEHT-----------DRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVSYA 543
DFNGDG GDIVIGAPGA G GRAYV++GN S + FDVS LE+ AGLV+ G +GGT QYTG P++ AGDVN DG+ D+LVGSP AG SQG+ ++VFGG LP ++L D+ G N +VFKGA+TGE D G++VSG FD+NGDG+SD +IGAPEGGT G +GE Y+VFGQ + A
Sbjct: 66 DFNGDGVGDIVIGAPGASDGVGRAYVVYGNSSGIDEDFDVSALEDRDSAGLVMTGRQGGTFSHSIGYAVAAAGDVNGDSLMDVMVGAYGSSHLSEGAAHVVYGTNTSAAYDSSFLDLGAGDGGGLDGVDGFTLSGMSIEIELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVAGGNEGVVVFKGALTGEFVIICGFHDLCSIDESGFSVSGGFDMNGDGLSDFIIGAPEGGTIGEFDGEAYVVFGQENLA 357
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI) HSP 1 Score: 146 bits (369), Expect = 6.680e-40 Identity = 89/210 (42.38%), Postives = 125/210 (59.52%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGAD-LGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTA------------------------QYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQGYAFVVFGGEDLPATLDL--ESDLTGSNG--MVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVSYA 543
D NGD D+++G+ G+ L G A+V++G + ++D S L+ + G L G +G T QYTG P++ AGDVN DG+ D+LVGSP AG QG+ ++VFGG LP+ ++L D+TG N +VFKGA+T D G++VSG FD+NGDG+SD +IGAPEGGTTG +GE Y++FGQ + A
Sbjct: 66 DVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNT--SAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALT----DESGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLA 269
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI) HSP 1 Score: 146 bits (369), Expect = 5.590e-38 Identity = 89/210 (42.38%), Postives = 125/210 (59.52%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGAD-LGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTA------------------------QYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQGYAFVVFGGEDLPATLDL--ESDLTGSNG--MVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVSYA 543
D NGD D+++G+ G+ L G A+V++G + ++D S L+ + G L G +G T QYTG P++ AGDVN DG+ D+LVGSP AG QG+ ++VFGG LP+ ++L D+TG N +VFKGA+T D G++VSG FD+NGDG+SD +IGAPEGGTTG +GE Y++FGQ + A
Sbjct: 66 DVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNT--SAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALT----DESGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLA 269
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: UPI00034B8D6D (FG-GAP repeat protein n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034B8D6D) HSP 1 Score: 134 bits (337), Expect = 4.420e-33 Identity = 86/189 (45.50%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGA-DLGN----GRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGTSS----QGYAFVVFG-GEDLPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALN--GEVYIVFGQ 531
D NGDG GD++IGAP A GN G AYV+FG+ S D++ L+ ++ G V+ G + + G V+ AGDVN DG DD+++G+P AG+S QG A+VVFG G+D A+L+L +DL GSNG V G + D +G +VSG D+NGDGV D++IGAP+ G++G + GE YI+FG
Sbjct: 268 DINGDGVGDLIIGAPNAGSSGNYSDQGEAYVIFGSSDGFAASLDLTALDGSN--GFVITGID--SNDNLGHSVSSAGDVNGDGIDDLIIGAPNAGSSGNYSDQGEAYVVFGNGDDFAASLNL-ADLDGSNGFVITGI---DDYDNLGRSVSGAGDINGDGVDDLIIGAPDAGSSGNYSDEGEAYIIFGS 448
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: D8K4V9_NITWC (FG-GAP repeat protein n=1 Tax=Nitrosococcus watsoni (strain C-113) TaxID=105559 RepID=D8K4V9_NITWC) HSP 1 Score: 134 bits (336), Expect = 4.620e-33 Identity = 85/188 (45.21%), Postives = 110/188 (58.51%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGADLGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGT-----SSQGYAFVVFGGEDLPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVSYAFP 549
D NGDG DIVIG G +G +YV+FG + + D+S L+ ++ G VL T T TG V+ AGDVN DGFDD+LVG+P GT S GY++VVFG P+ + L DL GSNG + G G DR+G++V G DVNGDGV DI++GAP G +G+ Y+VFG S P
Sbjct: 385 DVNGDGIDDIVIGQAGFSGYSGLSYVVFGTNAGFPAAVDLSALDGSN--GFVLGSTL--TGSRTGFSVSGAGDVNGDGFDDLLVGAP--GTYPFEGDSLGYSYVVFGASTFPSAILLPYDLDGSNGFIINGTELG---DRLGHSVGGVGDVNGDGVDDIILGAPSASPNGENSGQSYVVFGTPSVGGP 563
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: UPI001A09BD96 (FG-GAP repeat protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI001A09BD96) HSP 1 Score: 129 bits (325), Expect = 1.590e-31 Identity = 80/186 (43.01%), Postives = 115/186 (61.83%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGAD---LGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAA---GTSSQGYAFVVFGGED-LPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVS 537
D NGDG D+++GA AD +G +YV+FG + + ++S L+ + G V+ G GT ++G V+ AGDVN DGFDD++VG+P A G S G ++VVFG + A+LDL S+L GSNG V G G DR+G ++SG D+NGDGV D++IGA G +GE Y++FG+V+
Sbjct: 323 DVNGDGIDDLIVGAASADPNGSNSGESYVVFGRRGGFDTNLELSSLDGRN--GFVINGV--GTLDFSGNAVSSAGDVNGDGFDDLIVGAPLADPSGNQSGGESYVVFGRDGGFGASLDL-SNLDGSNGFVVNGIDEG---DRLGVSISGAGDINGDGVDDLIIGADSANPNGGDSGESYVIFGRVA 500
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: UPI001E2BA31C (Ig-like domain-containing protein n=1 Tax=Nostoc mirabile TaxID=2907820 RepID=UPI001E2BA31C) HSP 1 Score: 129 bits (324), Expect = 2.650e-31 Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGADLGN-----GRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQ---GYAFVVFG-GEDLPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALN-GEVYIVFGQVS 537
D NGDG+ D++IGA A + G++YV+FG+ S SFD S L+ ++ G V+ GT+GG Y+G V+ AGD+N DGFDD+++G+P AG + + G ++VVFG A+L+L S L GSNG V G TG+ + G++VS D+NGDG D++IGAP G G GE Y+VFG S
Sbjct: 652 DINGDGFDDLIIGAQDASDNDDKFRAGQSYVVFGSSSGFGASFDFSSLDGSN--GFVINGTDGG--DYSGYSVSNAGDINGDGFDDLIIGAPGAGPNGKSRAGESYVVFGKSSGFGASLNLSS-LDGSNGFVINGIDTGDFS---GWSVSNAGDINGDGFDDLIIGAPRGEPNGKSRAGESYVVFGSSS 832
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: A0A1Z4S0N2_9NOSO (Putative outer membrane adhesin n=1 Tax=Nostoc sp. NIES-4103 TaxID=2005458 RepID=A0A1Z4S0N2_9NOSO) HSP 1 Score: 128 bits (322), Expect = 4.950e-31 Identity = 83/190 (43.68%), Postives = 115/190 (60.53%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGADLGN----GRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQGYA-----FVVFGGED-LPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALN-GEVYIVFGQVS 537
DFNGDG D++IGAP AD G +YV+FG+ S S D+S L+ ++ G V+ G T Y+G V+ AGDVN DGFDD+++G+P A + Q YA +VVFG A+L+L ++L GSNG V G ++ DR G++VS D+NGDG+SD++IGAP+ G G Y+VFG S
Sbjct: 781 DFNGDGISDLIIGAPYADPNGQSRAGSSYVVFGSSSGFGASLDLSSLDGSN--GFVINGIN--TGDYSGISVSSAGDVNGDGFDDLIIGAPNADPNGQSYAGAGSSYVVFGSSSGFGASLNL-AELDGSNGFVINGI---DNYDRSGFSVSSAGDINGDGISDLIIGAPDADPNGQSRAGSSYVVFGSSS 962
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: D8LR46_ECTSI (Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR46_ECTSI) HSP 1 Score: 128 bits (321), Expect = 6.510e-31 Identity = 77/181 (42.54%), Postives = 116/181 (64.09%), Query Frame = 1
Query: 1 DFNGDGYGDIVIG-APGADLGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGTSSQGYAFVVFGGEDLPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFGQVSY 540
D N DG+ D+++G +P + G AYV+FG+ES+S L+ DVS L+ T+ G + GT+ G + G V AGDVN DG+DDV+VG+ A +S+ G VVFG PA + + +DL GS G V GA T +D G++++ DVN DG +D++IGA + G+++GEVY+VFG +++
Sbjct: 60 DVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTN--GFKIEGTDAG--DFAGTAVCGAGDVNGDGYDDVMVGAWGA-SSAAGEILVVFGAATFPAVVGV-ADLDGSAGFVMLGATT---SDAAGFSLAAAGDVNNDGAADMIIGAFQSDPAGSMSGEVYVVFGSLTW 231
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Match: B4WT86_SYNS7 (Type I secretion target GGXGXDXXX repeat protein domain protein n=1 Tax=Synechococcus sp. (strain ATCC 29403 / PCC 7335) TaxID=91464 RepID=B4WT86_SYNS7) HSP 1 Score: 127 bits (319), Expect = 1.170e-30 Identity = 81/182 (44.51%), Postives = 116/182 (63.74%), Query Frame = 1
Query: 1 DFNGDGYGDIVIGAPGAD---LGNGRAYVLFGNESWSELSFDVSDLENTSHAGLVLAGTEGGTAQYTGKPVAKAGDVNADGFDDVLVGSPAAGT--SSQGYAFVVFGGE-DLPATLDLESDLTGSNGMVFKGAITGEHTDRVGYAVSGDFDVNGDGVSDIVIGAPEGGTTGALNGEVYIVFG 528
D NGDG+ D+VIGAPG+D G+G +YV+FG++ + +F++S+L+ ++ G L G T +G+ V+ AGDVN DGFDD+++G+P + S G ++VVFG + ATL+L S L GSNG V G G D GY+VSG D+NGDG D++IGAP G +G+ Y+VFG
Sbjct: 173 DVNGDGFDDLVIGAPGSDPNGSGSGESYVVFGSDMSVDPTFNLSNLDGSN--GFALNGIN--TFDSSGRSVSGAGDVNGDGFDDLIIGAPGSDPNGSGSGESYVVFGSDVGFGATLELSS-LDGSNGFVISGIDAG---DVSGYSVSGAGDLNGDGFDDLIIGAPGERFRGDTSGQSYVVFG 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig894.16809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig894.16809.1 >prot_H-paniculata_contig894.16809.1 ID=prot_H-paniculata_contig894.16809.1|Name=mRNA_H-paniculata_contig894.16809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp DFNGDGYGDIVIGAPGADLGNGRAYVLFGNESWSELSFDVSDLENTSHAGback to top mRNA from alignment at H-paniculata_contig894:28570..30164- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig894.16809.1 ID=mRNA_H-paniculata_contig894.16809.1|Name=mRNA_H-paniculata_contig894.16809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-paniculata_contig894:28570..30164- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig894:28570..30164- >mRNA_H-paniculata_contig894.16809.1 ID=mRNA_H-paniculata_contig894.16809.1|Name=mRNA_H-paniculata_contig894.16809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig894:28570..30164- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |