mRNA_H-paniculata_contig8938.16806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8938.16806.1
Unique NamemRNA_H-paniculata_contig8938.16806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.490e-16
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSSDSAIAR 141
            RIGPAGVSSG+SLR+LP   LEDL KICQHYE KC GVY+SDSA AR
Sbjct:   61 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAAR 107
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.510e-16
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSSDSAIAR 141
            RIGPAGVSSG+SLR+LP   LEDL KICQHYE KC GVY+SDSA AR
Sbjct:   12 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAAR 58
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: A0A836CIS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.250e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSSDSAIAR 141
            R+GP GVSSG+SLR LP  + + +  ICQHYE KC G Y+SDSA AR
Sbjct:   46 RVGPPGVSSGVSLRHLPDTTFKAVAAICQHYEEKCSGKYASDSAAAR 92
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: K0TQI1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQI1_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 RIGPAG-VSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSS 123
            R+GP G VSSGIS R LP PSL++++KIC+HY+ KC G Y S
Sbjct:  534 RVGPKGIVSSGISFRDLPPPSLDEIKKICEHYQVKCSGTYKS 575
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: A0A7S2PFX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFX9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.230e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSS 123
            R+GP GVSSG+S R LP  SL+ +  IC HYEAKC G Y +
Sbjct:   47 RVGPKGVSSGVSFRKLPDTSLQAIINICSHYEAKCSGKYET 87
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BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Match: A0A0L0D731_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D731_THETB)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    1 RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSSDSAIAR 141
            R+ P  VSSGIS R LP+ SL +L ++C HYEAK  G Y   S   R
Sbjct:   12 RVAPEPVSSGISFRKLPRASLIELGRVCDHYEAKGAGTYGRGSKATR 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8938.16806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTA0_ECTSI4.490e-1678.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMF9_9PHAE4.510e-1678.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIS0_9STRA3.250e-1161.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TQI1_THAOC2.000e-961.90Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2PFX9_9STRA6.230e-858.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0L0D731_THETB2.670e-651.06Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8938contigH-paniculata_contig8938:150..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog2880.D7FTA0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2BZB3@1,2SGA8@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003820.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.6780849-CDS-H-paniculata_contig8938:149..2931622931117.6780849-CDS-H-paniculata_contig8938:149..293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8938 150..293 -
1691481598.1605625-CDS-H-paniculata_contig8938:149..2931691481598.1605625-CDS-H-paniculata_contig8938:149..293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8938 150..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8938.16806.1prot_H-paniculata_contig8938.16806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8938 150..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8938.16806.1

>prot_H-paniculata_contig8938.16806.1 ID=prot_H-paniculata_contig8938.16806.1|Name=mRNA_H-paniculata_contig8938.16806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
RIGPAGVSSGISLRTLPKPSLEDLRKICQHYEAKCGGVYSSDSAIAR*
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mRNA from alignment at H-paniculata_contig8938:150..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8938.16806.1 ID=mRNA_H-paniculata_contig8938.16806.1|Name=mRNA_H-paniculata_contig8938.16806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig8938:150..293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATTGGACCAGCTGGAGTGAGCTCTGGGATCTCATTGAGGACACTACC
GAAACCCAGTCTGGAGGACCTGCGAAAGATTTGTCAGCACTACGAAGCGA
AATGTGGCGGTGTGTACTCCAGTGACTCTGCCATAGCTAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8938:150..293-

>mRNA_H-paniculata_contig8938.16806.1 ID=mRNA_H-paniculata_contig8938.16806.1|Name=mRNA_H-paniculata_contig8938.16806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig8938:150..293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATTGGACCAGCTGGAGTGAGCTCTGGGATCTCATTGAGGACACTACC
GAAACCCAGTCTGGAGGACCTGCGAAAGATTTGTCAGCACTACGAAGCGA
AATGTGGCGGTGTGTACTCCAGTGACTCTGCCATAGCTAGGTGAAGGATT
GGACCAGCTGGAGTGAGCTCTGGGATCTCATTGAGGACACTACCGAAACC
CAGTCTGGAGGACCTGCGAAAGATTTGTCAGCACTACGAAGCGAAATGTG
GCGGTGTGTACTCCAGTGACTCTGCCATAGCTAGGTGA
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