mRNA_H-paniculata_contig8901.16787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8901.16787.1
Unique NamemRNA_H-paniculata_contig8901.16787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8901.16787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8901contigH-paniculata_contig8901:4470..6726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1999
Cds size1599
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8901.16787.1prot_H-paniculata_contig8901.16787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8901 4470..6327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.7285378-CDS-H-paniculata_contig8901:4469..59911622931113.7285378-CDS-H-paniculata_contig8901:4469..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8901 4470..5991 -
1691481596.2798808-CDS-H-paniculata_contig8901:4469..59911691481596.2798808-CDS-H-paniculata_contig8901:4469..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8901 4470..5991 -
1622931113.7512925-CDS-H-paniculata_contig8901:6250..63271622931113.7512925-CDS-H-paniculata_contig8901:6250..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8901 6251..6327 -
1691481596.291744-CDS-H-paniculata_contig8901:6250..63271691481596.291744-CDS-H-paniculata_contig8901:6250..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8901 6251..6327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.7787726-UTR-H-paniculata_contig8901:6327..67261622931113.7787726-UTR-H-paniculata_contig8901:6327..6726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8901 6328..6726 -
1691481596.3031805-UTR-H-paniculata_contig8901:6327..67261691481596.3031805-UTR-H-paniculata_contig8901:6327..6726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8901 6328..6726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8901.16787.1

>prot_H-paniculata_contig8901.16787.1 ID=prot_H-paniculata_contig8901.16787.1|Name=mRNA_H-paniculata_contig8901.16787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=533bp
MHTSAPGDDELNGAAAALLGLHSSARSTSPPPRSTSPASVLRPALSTATT
TSRAPPTLIPLTKHHTYPNPWNGSFHFSPPTTIPPVVNRARSVNHQQEPR
AGGFVAPGGNDHAYPSYHTTTAVTAAASAAQGQGRGLCFELPFQNHADAA
AAAAAAAASVSASEGRFGSSEHVPQDPSIRRNNFLGISFADHGDVSAGAM
TATATATADGGADAATAWMKPPGAARQQQQQRLLTLRPSASSFSGSSSSR
TVPQTTAPWPLPHPAATVSPVALVMARRHHQQQQHAAAEAAARERPARRT
SISPSRVSPPARILQQQIVCGPVLRAERNIGVRWTWTTSGDEKGHGRPVP
IGPAPIGQDMLHTVRTPTSVHRQQLPPPAPRSVQPRQQNVQQQQQQVWGT
TQHQDKQSLNHLWRLIPGNLVPGALQRRSPDLRGTDENRKGYEPDQPGMS
FLPGGKQPRGLVDDTACGRWYSPDVHPPLSDVARYHRARAVSRLRARRRA
LAAATATATATVTASSALPKASSLARFSSSTSN
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mRNA from alignment at H-paniculata_contig8901:4470..6726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8901.16787.1 ID=mRNA_H-paniculata_contig8901.16787.1|Name=mRNA_H-paniculata_contig8901.16787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2257bp|location=Sequence derived from alignment at H-paniculata_contig8901:4470..6726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGAGCTTTGCAAGAGTCTCCACGTTTCAAGAAAGACGGAAAAGAGAAC
CACCGCTACACGTGACTGGTGGACTGTTCATACCCGCGCAAACATCAACA
CATTAGTCCCCACGTAATATCCAGAGGATATTGATAGCCTGCGCGCTTGC
CCCTCTACCCGCGACCTGTAGGTTCTAACGCATACGCTCTCTGGGCTCCT
GGGTAGGGCACCTGCGCTTGAGCGACTTTGGCGAGCGGGTGAGGAATTTT
GTGCACACAGGTAGAACACAGAAAAAGAGCCAAGACCTACTTTCACTATT
ATATAGTGCCTGTGAATGAGGAGCACCAAACGGTAATAACAGACGCTAGT
GCAGACCGATCGAGACTATCGGGGCTCAAGTGGCGCAGACCTCGCGGCGA
TGCATACTTCTGCTCCTGGAGATGACGAGCTCAATGGGGCTGCGGCTGCT
CTATTAGGTCTTCACTCCAGCGCTAGGTAAGCCCTCGCGCGTGTTTGTGT
AAGTGCTGGTCGCCATCTCCGATCTGAGCCCGGCTTGTTGCCATACTGTG
TCTAGTGTATTTTCAGCATATTTTCACGCAAACATGCAATTAGGTGTGTT
GTTCTTATACTCATTTCAAGTGAAAGATATATCGGTGATTCAAACATATG
ATCGAAGTGCAACATATCTTTTCACCCTCTGCTGGGCTGCGGCGCTCACT
CGGTCCCCCTCAACTTGCTCCGTACGCCAAACCAGATCTACATCCCCGCC
ACCACGGTCCACCTCTCCAGCATCTGTTTTGCGGCCGGCGCTGTCGACGG
CGACAACCACTTCGCGGGCGCCACCAACTCTGATCCCTCTGACGAAGCAC
CACACCTACCCCAATCCATGGAACGGAAGTTTCCATTTTTCGCCACCGAC
GACAATTCCACCTGTAGTTAACCGAGCACGATCTGTCAATCACCAGCAGG
AGCCTCGAGCGGGGGGTTTCGTTGCCCCTGGGGGAAACGATCATGCTTAC
CCTTCCTATCACACGACAACGGCCGTCACCGCTGCTGCTTCGGCCGCTCA
AGGGCAGGGGAGAGGGTTGTGCTTCGAGCTGCCATTCCAAAACCATGCCG
ATGCAGCAGCAGCTGCTGCTGCTGCTGCTGCTTCCGTCTCCGCGTCCGAA
GGGCGATTTGGATCATCGGAACATGTTCCACAAGATCCTTCGATTCGGCG
AAACAATTTCCTCGGGATTTCGTTTGCTGACCATGGCGATGTTTCTGCTG
GTGCTATGACTGCTACTGCTACTGCTACTGCTGATGGTGGCGCCGATGCT
GCTACTGCCTGGATGAAGCCTCCTGGTGCTGCGAGACAGCAGCAGCAGCA
GAGACTGTTGACCCTCCGACCATCCGCGTCGAGCTTTTCCGGGTCATCCT
CCTCTCGCACTGTTCCCCAAACCACTGCACCCTGGCCGCTTCCGCACCCT
GCTGCGACAGTGTCCCCCGTGGCACTCGTAATGGCTCGGCGTCATCATCA
GCAGCAGCAACATGCGGCAGCGGAGGCAGCGGCGCGGGAACGACCCGCAA
GGCGGACTTCCATATCTCCGTCGCGAGTATCGCCACCAGCTCGGATATTA
CAGCAGCAAATCGTCTGTGGTCCAGTTCTTCGGGCGGAGAGAAACATTGG
TGTTCGTTGGACATGGACGACTTCGGGAGATGAAAAGGGTCATGGGCGGC
CGGTTCCTATCGGACCGGCTCCTATCGGGCAAGACATGCTTCACACGGTA
CGAACCCCGACTTCGGTTCACCGACAGCAACTGCCGCCTCCAGCGCCCAG
GTCGGTTCAGCCCCGCCAGCAAAATGTACAGCAGCAGCAACAGCAAGTGT
GGGGGACGACGCAACATCAAGATAAACAGTCCCTGAACCACCTGTGGCGT
CTCATCCCTGGCAACCTCGTCCCGGGTGCCCTCCAGCGAAGAAGCCCGGA
TCTCCGCGGCACTGACGAAAACCGAAAAGGATACGAGCCGGACCAACCCG
GAATGTCGTTTCTGCCCGGCGGCAAGCAACCGAGGGGCCTCGTAGATGAC
ACGGCCTGCGGCCGCTGGTATTCGCCGGACGTCCACCCGCCGTTGTCGGA
CGTCGCTCGCTACCACCGCGCCCGCGCCGTGTCGCGCCTCCGCGCTCGCC
GCCGAGCGCTCGCCGCGGCCACCGCCACCGCCACCGCCACCGTCACCGCC
TCCTCGGCTCTGCCGAAGGCTTCGTCTCTAGCCCGTTTCTCTTCGAGTAC
TTCTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8901:4470..6726-

>mRNA_H-paniculata_contig8901.16787.1 ID=mRNA_H-paniculata_contig8901.16787.1|Name=mRNA_H-paniculata_contig8901.16787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3198bp|location=Sequence derived from alignment at H-paniculata_contig8901:4470..6726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACTTCTGCTCCTGGAGATGACGAGCTCAATGGGGCTGCGGCTGC
TCTATTAGGTCTTCACTCCAGCGCTAGATGCATACTTCTGCTCCTGGAGA
TGACGAGCTCAATGGGGCTGCGGCTGCTCTATTAGGTCTTCACTCCAGCG
CTAGATCTACATCCCCGCCACCACGGTCCACCTCTCCAGCATCTGTTTTG
CGGCCGGCGCTGTCGACGGCGACAACCACTTCGCGGGCGCCACCAACTCT
GATCCCTCTGACGAAGCACCACACCTACCCCAATCCATGGAACGGAAGTT
TCCATTTTTCGCCACCGACGACAATTCCACCTGTAGTTAACCGAGCACGA
TCTGTCAATCACCAGCAGGAGCCTCGAGCGGGGGGTTTCGTTGCCCCTGG
GGGAAACGATCATGCTTACCCTTCCTATCACACGACAACGGCCGTCACCG
CTGCTGCTTCGGCCGCTCAAGGGCAGGGGAGAGGGTTGTGCTTCGAGCTG
CCATTCCAAAACCATGCCGATGCAGCAGCAGCTGCTGCTGCTGCTGCTGC
TTCCGTCTCCGCGTCCGAAGGGCGATTTGGATCATCGGAACATGTTCCAC
AAGATCCTTCGATTCGGCGAAACAATTTCCTCGGGATTTCGTTTGCTGAC
CATGGCGATGTTTCTGCTGGTGCTATGACTGCTACTGCTACTGCTACTGC
TGATGGTGGCGCCGATGCTGCTACTGCCTGGATGAAGCCTCCTGGTGCTG
CGAGACAGCAGCAGCAGCAGAGACTGTTGACCCTCCGACCATCCGCGTCG
AGCTTTTCCGGGTCATCCTCCTCTCGCACTGTTCCCCAAACCACTGCACC
CTGGCCGCTTCCGCACCCTGCTGCGACAGTGTCCCCCGTGGCACTCGTAA
TGGCTCGGCGTCATCATCAGCAGCAGCAACATGCGGCAGCGGAGGCAGCG
GCGCGGGAACGACCCGCAAGGCGGACTTCCATATCTCCGTCGCGAGTATC
GCCACCAGCTCGGATATTACAGCAGCAAATCGTCTGTGGTCCAGTTCTTC
GGGCGGAGAGAAACATTGGTGTTCGTTGGACATGGACGACTTCGGGAGAT
GAAAAGGGTCATGGGCGGCCGGTTCCTATCGGACCGGCTCCTATCGGGCA
AGACATGCTTCACACGGTACGAACCCCGACTTCGGTTCACCGACAGCAAC
TGCCGCCTCCAGCGCCCAGGTCGGTTCAGCCCCGCCAGCAAAATGTACAG
CAGCAGCAACAGCAAGTGTGGGGGACGACGCAACATCAAGATAAACAGTC
CCTGAACCACCTGTGGCGTCTCATCCCTGGCAACCTCGTCCCGGGTGCCC
TCCAGCGAAGAAGCCCGGATCTCCGCGGCACTGACGAAAACCGAAAAGGA
TACGAGCCGGACCAACCCGGAATGTCGTTTCTGCCCGGCGGCAAGCAACC
GAGGGGCCTCGTAGATGACACGGCCTGCGGCCGCTGGTATTCGCCGGACG
TCCACCCGCCGTTGTCGGACGTCGCTCGCTACCACCGCGCCCGCGCCGTG
TCGCGCCTCCGCGCTCGCCGCCGAGCGCTCGCCGCGGCCACCGCCACCGC
CACCGCCACCGTCACCGCCTCCTCGGCTCTGCCGAAGGCTTCGTCTCTAG
CCCGTTTCTCTTCGAGTACTTCTAACATCTACATCCCCGCCACCACGGTC
CACCTCTCCAGCATCTGTTTTGCGGCCGGCGCTGTCGACGGCGACAACCA
CTTCGCGGGCGCCACCAACTCTGATCCCTCTGACGAAGCACCACACCTAC
CCCAATCCATGGAACGGAAGTTTCCATTTTTCGCCACCGACGACAATTCC
ACCTGTAGTTAACCGAGCACGATCTGTCAATCACCAGCAGGAGCCTCGAG
CGGGGGGTTTCGTTGCCCCTGGGGGAAACGATCATGCTTACCCTTCCTAT
CACACGACAACGGCCGTCACCGCTGCTGCTTCGGCCGCTCAAGGGCAGGG
GAGAGGGTTGTGCTTCGAGCTGCCATTCCAAAACCATGCCGATGCAGCAG
CAGCTGCTGCTGCTGCTGCTGCTTCCGTCTCCGCGTCCGAAGGGCGATTT
GGATCATCGGAACATGTTCCACAAGATCCTTCGATTCGGCGAAACAATTT
CCTCGGGATTTCGTTTGCTGACCATGGCGATGTTTCTGCTGGTGCTATGA
CTGCTACTGCTACTGCTACTGCTGATGGTGGCGCCGATGCTGCTACTGCC
TGGATGAAGCCTCCTGGTGCTGCGAGACAGCAGCAGCAGCAGAGACTGTT
GACCCTCCGACCATCCGCGTCGAGCTTTTCCGGGTCATCCTCCTCTCGCA
CTGTTCCCCAAACCACTGCACCCTGGCCGCTTCCGCACCCTGCTGCGACA
GTGTCCCCCGTGGCACTCGTAATGGCTCGGCGTCATCATCAGCAGCAGCA
ACATGCGGCAGCGGAGGCAGCGGCGCGGGAACGACCCGCAAGGCGGACTT
CCATATCTCCGTCGCGAGTATCGCCACCAGCTCGGATATTACAGCAGCAA
ATCGTCTGTGGTCCAGTTCTTCGGGCGGAGAGAAACATTGGTGTTCGTTG
GACATGGACGACTTCGGGAGATGAAAAGGGTCATGGGCGGCCGGTTCCTA
TCGGACCGGCTCCTATCGGGCAAGACATGCTTCACACGGTACGAACCCCG
ACTTCGGTTCACCGACAGCAACTGCCGCCTCCAGCGCCCAGGTCGGTTCA
GCCCCGCCAGCAAAATGTACAGCAGCAGCAACAGCAAGTGTGGGGGACGA
CGCAACATCAAGATAAACAGTCCCTGAACCACCTGTGGCGTCTCATCCCT
GGCAACCTCGTCCCGGGTGCCCTCCAGCGAAGAAGCCCGGATCTCCGCGG
CACTGACGAAAACCGAAAAGGATACGAGCCGGACCAACCCGGAATGTCGT
TTCTGCCCGGCGGCAAGCAACCGAGGGGCCTCGTAGATGACACGGCCTGC
GGCCGCTGGTATTCGCCGGACGTCCACCCGCCGTTGTCGGACGTCGCTCG
CTACCACCGCGCCCGCGCCGTGTCGCGCCTCCGCGCTCGCCGCCGAGCGC
TCGCCGCGGCCACCGCCACCGCCACCGCCACCGTCACCGCCTCCTCGGCT
CTGCCGAAGGCTTCGTCTCTAGCCCGTTTCTCTTCGAGTACTTCTAAC
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