mRNA_H-paniculata_contig8899.16778.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8899.16778.1
Unique NamemRNA_H-paniculata_contig8899.16778.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A6H5KMW9_9PHAE (Vacuolar protein sorting-associated protein 35 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.320e-28
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFWA 168
            QVRALVSMAGTLLSC+GFDP DYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW+
Sbjct:  742 QVRALVSMAGTLLSCEGFDPVDYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFWS 797
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S2MQE7_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQE7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.750e-23
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q+RAL+SM GTLL+C+ FD  DYD L TKT QYAAKLLKKPDQCRMVTLCSHLFW
Sbjct:  148 QLRALISMVGTLLTCRNFDDQDYDTLITKTTQYAAKLLKKPDQCRMVTLCSHLFW 202
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S2V1M5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1M5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.570e-20
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            QVRAL SM GTLL+C  F+  DYD L TKT QYAAKLLKKPDQ RM+T+C+HLFW
Sbjct:   98 QVRALGSMVGTLLNCHNFEEDDYDPLITKTTQYAAKLLKKPDQARMITMCTHLFW 152
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S3XS10_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS10_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 8.240e-20
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q RAL SMAG L +C  FDP+D DALATK AQYAAKLL++PDQCR+V L +HLFW
Sbjct:   72 QARALESMAGALRACVAFDPSDRDALATKVAQYAAKLLRRPDQCRLVALAAHLFW 126
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: F0YJY6_AURAN (SWIM-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY6_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.620e-19
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFWA 168
            Q++AL  M GTLL   GFD  DYDALATKT QYAAKL KKPDQCRMV  CSHLFW+
Sbjct:  652 QLQALHLMVGTLLQASGFDAPDYDALATKTTQYAAKLFKKPDQCRMVATCSHLFWS 707
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: B8C964_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C964_THAPS)

HSP 1 Score: 88.2 bits (217), Expect = 4.930e-19
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q+RA+ SM G+LLSC+ F+ ADY+AL TKTAQYAAKLLKKPDQCRMV +CS LF+
Sbjct:  605 QIRAITSMVGSLLSCRSFERADYEALITKTAQYAAKLLKKPDQCRMVCVCSRLFY 659
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7R9WF66_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WF66_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.150e-18
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q RA+ SM GTLL+C+ F+  D++AL TKTAQYAAKLLKK DQC+MVTLCSHLF+
Sbjct:  115 QQRAITSMVGTLLACRTFEREDFEALVTKTAQYAAKLLKKADQCKMVTLCSHLFF 169
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S2MWL0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MWL0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.990e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q R++  + GTLLSC+ F+  DY+AL TKTAQYAAKLLKKPDQCRMVTLCSHLF+
Sbjct:  219 QQRSIELVVGTLLSCKTFEKDDYEALITKTAQYAAKLLKKPDQCRMVTLCSHLFF 273
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BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S2U6Y6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Y6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.050e-18
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q+R LV++ GT+L+C  F   DY+AL TKTAQYAAKLLKKPDQC+MVTLCSHLF+
Sbjct:  332 QLRILVTIIGTMLACGNFSKDDYEALITKTAQYAAKLLKKPDQCKMVTLCSHLFY 386
[Close]
BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Match: A0A7S2EWB7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWB7_TRICV)

HSP 1 Score: 84.3 bits (207), Expect = 3.290e-18
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QVRALVSMAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFW 165
            Q R +V+M GTLL+C+ F+  DY+AL TKTAQYAAKLLKK DQC+MVTLCSHLF+
Sbjct:  122 QQRTIVAMVGTLLACRTFERDDYEALITKTAQYAAKLLKKTDQCKMVTLCSHLFF 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8899.16778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW9_9PHAE4.320e-2894.64Vacuolar protein sorting-associated protein 35 n=2... [more]
A0A7S2MQE7_9STRA2.750e-2380.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2V1M5_9STRA6.570e-2072.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XS10_HETAK8.240e-2070.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YJY6_AURAN3.620e-1973.21SWIM-type domain-containing protein n=1 Tax=Aureoc... [more]
B8C964_THAPS4.930e-1972.73Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7R9WF66_9STRA2.150e-1870.91Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2MWL0_9STRA2.990e-1872.73Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2U6Y6_9STRA3.050e-1870.91Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EWB7_TRICV3.290e-1870.91Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8899contigH-paniculata_contig8899:215..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6e-20
Seed eggNOG ortholog2880.D8LQA0
KEGG koko:K18468
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of late endosome to lysosome transport
EggNOG OGsKOG1107@1,KOG1107@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size168
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.666412-CDS-H-paniculata_contig8899:214..3611622931112.666412-CDS-H-paniculata_contig8899:214..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8899 215..361 -
1691481595.807625-CDS-H-paniculata_contig8899:214..3611691481595.807625-CDS-H-paniculata_contig8899:214..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8899 215..361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.6805794-UTR-H-paniculata_contig8899:361..3821622931112.6805794-UTR-H-paniculata_contig8899:361..382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8899 362..382 -
1691481595.8196833-UTR-H-paniculata_contig8899:361..3821691481595.8196833-UTR-H-paniculata_contig8899:361..382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8899 362..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8899.16778.1prot_H-paniculata_contig8899.16778.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8899 215..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8899.16778.1

>prot_H-paniculata_contig8899.16778.1 ID=prot_H-paniculata_contig8899.16778.1|Name=mRNA_H-paniculata_contig8899.16778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MAGTLLSCQGFDPADYDALATKTAQYAAKLLKKPDQCRMVTLCSHLFWA
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mRNA from alignment at H-paniculata_contig8899:215..382-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8899.16778.1 ID=mRNA_H-paniculata_contig8899.16778.1|Name=mRNA_H-paniculata_contig8899.16778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig8899:215..382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCGAGCTTTGGTTTCCATGGCTGGTACTCTGCTGTCGTGTCAAGG
CTTCGACCCAGCGGACTACGACGCGCTAGCAACCAAGACTGCACAGTACG
CGGCGAAGCTGCTCAAGAAGCCTGACCAGTGCCGAATGGTGACGTTGTGT
AGCCACCTTTTCTGGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig8899:215..382-

>mRNA_H-paniculata_contig8899.16778.1 ID=mRNA_H-paniculata_contig8899.16778.1|Name=mRNA_H-paniculata_contig8899.16778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig8899:215..382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGTACTCTGCTGTCGTGTCAAGGCTTCGACCCAGCGGACTACGA
CGCGCTAGCAACCAAGACTGCACAGTACGCGGCGAAGCTGCTCAAGAAGC
CTGACCAGTGCCGAATGGTGACGTTGTGTAGCCACCTTTTCTGGGCAATG
GCTGGTACTCTGCTGTCGTGTCAAGGCTTCGACCCAGCGGACTACGACGC
GCTAGCAACCAAGACTGCACAGTACGCGGCGAAGCTGCTCAAGAAGCCTG
ACCAGTGCCGAATGGTGACGTTGTGTAGCCACCTTTTCTGGGCA
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