mRNA_H-paniculata_contig8875.16764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8875.16764.1
Unique NamemRNA_H-paniculata_contig8875.16764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.640e-27
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   25 GGGKLPCVTAREPLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPPRLRETRGCTPENPCPA 285
            G G++PC+ AREPLQGSGV+ R+AR  L+IADW   G L  DEF+LAMYLCRR R GEG+PS LE+WMIPP LRE RGC    P PA
Sbjct:  332 GSGRMPCLVAREPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPA 418
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: A0A2D4BWP8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWP8_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 2.570e-7
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   31 GKLPCVTAREPLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPPRLRETRGCTP 267
            GK    T   PLQG+G    V +    +AD  ++GCL+ DEFA+AMYLC + ++GE +P+ L   ++PP     R  +P
Sbjct:  491 GKATGATCMAPLQGTGCPKDVLKTVWDLADVDKDGCLDVDEFAVAMYLCGKAKQGESLPTELPPSLLPPSKAALRMASP 569
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: A0A8K1FI61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI61_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-5
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   31 GKLPCVTAREPLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPP 237
            G+        PLQ +G S    +    ++D  ++GCL+ DEFA+AMYLC + +EGE +P+ L + ++PP
Sbjct:  468 GRATGAVCMAPLQATGCSQDKLKTIWDLSDVDKDGCLDADEFAVAMYLCNKAKEGEVLPAELPATLVPP 536
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: K3WW01_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW01_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-5
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   43 CVTAREPLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPP 237
            C+T   PL+ SG +    +    +AD  ++GCL+ DEFA+AMYLC + +EGE +P  L S M+PP
Sbjct:  474 CLT---PLKASGCAQDTLKAIWDLADVDKDGCLDADEFAVAMYLCDKAKEGEVLPVELPSSMMPP 535
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: F0WLM3_9STRA (Uncharacterized protein AlNc14C147G7412 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLM3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.370e-5
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   61 PLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPPRLR 246
            PLQ +G   +  +    +AD  ++G L+++EFA+AMYLC R +EG+ +P+ L   MIPP  R
Sbjct:  222 PLQATGCPPQALKTIWELADMDKDGYLDQEEFAIAMYLCNRAKEGDTMPTELSVSMIPPSKR 283
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BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Match: A0A024G737_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G737_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.840e-5
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   61 PLQGSGVSGRVARRALRIADWHENGCLERDEFALAMYLCRRHREGEGIPSRLESWMIPPRLR 246
            PLQ +G   +  +    +AD  ++G L++DEFA+AMYLC + ++G+ +P+ L   MIPP  R
Sbjct:  481 PLQATGCPQQALKTIWELADMDKDGFLDQDEFAVAMYLCNKAKDGDAMPTELSVSMIPPSKR 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8875.16764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE1.640e-2765.52EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A2D4BWP8_PYTIN2.570e-739.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FI61_PYTOL1.040e-537.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WW01_GLOUD1.060e-544.62Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WLM3_9STRA2.370e-541.94Uncharacterized protein AlNc14C147G7412 n=1 Tax=Al... [more]
A0A024G737_9STRA5.840e-540.32Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8875contigH-paniculata_contig8875:4582..8127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_002950.1
Exons3
Model size1006
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8875.16764.1prot_H-paniculata_contig8875.16764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8875 5282..8127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.6891015-UTR-H-paniculata_contig8875:4581..52811622931110.6891015-UTR-H-paniculata_contig8875:4581..5281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8875 4582..5281 -
1691481594.8791327-UTR-H-paniculata_contig8875:4581..52811691481594.8791327-UTR-H-paniculata_contig8875:4581..5281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8875 4582..5281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.7055092-CDS-H-paniculata_contig8875:5281..54201622931110.7055092-CDS-H-paniculata_contig8875:5281..5420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 5282..5420 -
1691481594.8884299-CDS-H-paniculata_contig8875:5281..54201691481594.8884299-CDS-H-paniculata_contig8875:5281..5420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 5282..5420 -
1622931110.719446-CDS-H-paniculata_contig8875:7446..75531622931110.719446-CDS-H-paniculata_contig8875:7446..7553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 7447..7553 -
1691481594.8963852-CDS-H-paniculata_contig8875:7446..75531691481594.8963852-CDS-H-paniculata_contig8875:7446..7553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 7447..7553 -
1622931110.7372286-CDS-H-paniculata_contig8875:8067..81271622931110.7372286-CDS-H-paniculata_contig8875:8067..8127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 8068..8127 -
1691481594.9085069-CDS-H-paniculata_contig8875:8067..81271691481594.9085069-CDS-H-paniculata_contig8875:8067..8127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8875 8068..8127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8875.16764.1

>prot_H-paniculata_contig8875.16764.1 ID=prot_H-paniculata_contig8875.16764.1|Name=mRNA_H-paniculata_contig8875.16764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
EEGSGEGAGGGKLPCVTAREPLQGSGVSGRVARRALRIADWHENGCLERD
EFALAMYLCRRHREGEGIPSRLESWMIPPRLRETRGCTPENPCPALRRRW
L*
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mRNA from alignment at H-paniculata_contig8875:4582..8127-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8875.16764.1 ID=mRNA_H-paniculata_contig8875.16764.1|Name=mRNA_H-paniculata_contig8875.16764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3546bp|location=Sequence derived from alignment at H-paniculata_contig8875:4582..8127- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGGGGAGCGGGGAGGGCGCCGGGGGGGGGAAGTTGCCGTGCGTGAC
CGCGCGAGAGGTATGTCGTGTGGTTAGCATGTGGAATAACATGGAAGTAA
CAGTCCGATGTAAGAAATAGCCGAATTTGCAAGTCAAACTTTCAGTGCAA
GGGTGTGATTGCGAGACCGCGGGACGGAACGGGACGGGAGAGGACAGTGT
GATGGGACAACTGGTGTCCATATTTAGGCGGGCCAGGGCGGGGCGGGGTG
GGGAGGGGCAGGGTGGCCTCGTGATAACCTATACTTGATTCATGTATAGA
TCTGCGTGAGTTTCCACGGGGTCCACCGTGATCCTGTGACCTCATTCGAC
AGCACATAGATTGGAAGAGGAGTTGGTTCTGTTCTCCAAGGAAACTACCG
GACGGGACGCGTCGATGATGATCCCACCTCCGTCCTGTGAGGGTCGCGTG
GTCTCGCGATGATGAGCCGGGTTATTTGTTATTTGTCTCTATGTTGACAG
GGAGCGAAAAAGCAAAAATAAAATACAGTACGAACGATTTTTTTTTTGTC
ATTCTCTCTATTTTGTTGCTCCAGCCTCTGCAAGGTTCGGGAGTGAGCGG
ACGCGTCGCGCGACGGGCGTTGCGAATAGCGGATTGGCACGAGAACGGTT
GCCTGGAGCGAGACGAATTTGCCTTGGCCATGTGAGTAGAATGGCTTTTC
TTTTTGTTTGTCGAGTTATGGTGGATTGAAAGCCCCTCACCTCCCCATCG
TCTGTTCGTGTTTTTTGTTTATTACTATCATTGTTTTCACGATATTTCAC
AGAAATAAACCCAGTTACGCACCCTTTGGCTTTTACAGGGAATATGTATT
TTCACATATCCTCAGTGTGATGGTTTTTTTTTTCTGAACCCCGTATGTTT
TTGTTTTTTTGCCAACAAATAGAGGTGTCCAAAAGGTCATGCTTGCAAAG
GTCGTAACAATACAGTACCAGCGGTACACAGGTTCAATATTTTGGACTTG
ATGGAAGAATGATTTCGAATATACACTGGGTACTCGATCTCTGTGCACGT
GCTTTTCCCTTTCTTTCCTCCTCTTGGAATATTCTATCATGCTCAATATA
CTGCATCAAGTCCACTATGTTGTACTGTGACGACCCATGCACCTTTGGTT
GGAGATCTGATTGGTGTCGTAATCACAAGTACACGAGTTGCAGCCATTAT
CATCATAATCAACGGTGTCCCTTTTTTGTTTCGGAAAATTCCGAGATTTT
TTTTTTTTTTTTCCAATATAATGATTCCGAAAGACGTGATCCATGTCACA
TAACCTCCCAACAAACTGGAGCACCAGCAACCTGTAGGTAAGGAATCCAG
CTGCTTCAAGATGGTGAGCGATTCGTTAATTTTGCTTACGACCAGTGCCA
TGTTTGCCCATTGCATAGGTTATTATTTACCTTTTCCTGCATGTGATTTG
TTGCCGCCACACGGACACAGACATTGAGTTTGTGCTGTACTTCGTCGTTA
TCTCTCTCTCTCTTTCTTGCTCGCACGTGTGCATGTTTTCGTTACACTGC
TGTTTAATATTTTATGTTCTATTTGGCACAACCCGAGACCGTAAAGGGTG
AAGGCGTAACTGTTTATTTGTGTCCATAAATCAAAAGCCGTAAGTACAGC
GTGCGTCTAGATCTTTTGAGTTGGACTCAAAATCAATTTCACACATGCGA
CTGCCTGCTCCCGCGGCGAAGGTCTGGAACGCTTCGCGATCAAAGGGTGG
AGGGTTATTACACCCGACAATATATTTTGTTTTATTCCCTCCCCCTGAAA
AAAACACGAGGGGTCGGTCCTCTTGAACCATTTTCTTTATCCATTAGACA
AAACCGCTCAGACCCGCGGTCAGAGGGGACATGAAAAAAAGACGAAAACC
TGTTTTACTTAGCACCCCGCTTTCCCGAATGAAGTACCCTAAAAAAACCC
GCAGGTATCAAATGCATCGAGGTGTGATCACTTTTCAAAAACAATTTTTT
CTCTAGAACTATGGCGTTGCTGGTGTTGTCGATTCACGGCTTCCTTTCGA
CGGCGTAAGGTCTCTCCTGCTTCTCGAGATAGTTCGAGTTTGAAAAGCGT
TTTTGCGCCTCGGTGCGGCTCATATCTTCTACCTCCGGGTTTTGCGGTCA
TGTGTCGCATGCCGGGCGGGGGGGATGTCGTCTGCACCAGGCATGCTAAT
GTTTGTATCATGCGCTTGTTTTTATAAGGACTTTTCAGATGACCTACTGG
AAATGAGACATGATCGACTGCGAACCGATTTGTAAAAATAGGACATGTCA
CACAATCCTACCGCAAAACGGTTTCTGTTTTGGTCACTTGTAAATCTCAT
GTACAAAAAAATGCCGGTCTCGCAAAAAGAGTCAAATATTTGGCTAGTCG
ACAGAATAACTGCGCGGTGTTTCGCATGACATGACTTCGTCAAATTAGAG
CTTTACCCACCCTATTTCGATTTCTTGTACGGTTTTAAGGATTTTCGGAT
AAGCGGATCTTCGTAAACACCATCTTGTTTGGCTGTTACATGGATGTAAC
GATCCTCCACCCCCACTACTAACGCAGCGTTGTAAGCGGGCCGAGCACAG
AGGGCTAACTGCGCAGGCGAAGTTGTCGCTCTACCAACCACTACAATATA
TACTAAGACCCAATCAGTTGCTTGATGTAGTGTCTTCCTTATCTCGCCAA
AACGCAGGTACCTCTGCCGACGACATCGCGAGGGCGAAGGAATTCCCTCG
AGGCTGGAGTCGTGGATGATACCGCCTCGGCTGCGTGAAACCCGGGGATG
TACCCCAGAGAACCCCTGTCCAGCGCTTCGAAGGCGGTGGTTATGAAACA
GCAAAACACCGTGCGCGTGCCCCCCCGCAATTCCAAGGCTCCGCCAAAGA
GACCTCCCCCCCCCCCCGCTCCAAGGTCAACGTTTTTTTCGTAGAAAAAG
GAGCATGGTAACCGTTATTTCAGATCGTCATGAAGTCAGAGCGCTGGTTG
CTTGTATGTATGGTGTCTATGTAAGGGATGGCCCACTCTGTTTTTTCCCG
AGTGGCCGTGATTGATCAAATACCTACTCAGTATACGACGTGCTGAACAA
AAGTGAGCACGCAGCTTCCCTCGGCCTCCTCCCCCACTTCCCCTCCAAAC
ACAACATGTCATATATAGCACGTGGCTCCCTTAACCAATACGTAGGCATG
CGTTCTGAAGGTTATTAAGAGCTCATAATAAACAGCGCGTTTGTGTGTGT
GATTTCAGAGTGCCATATTTGTTGTGGCTATCCATGAGTCGAAGTGGTGG
TTGAGTGGACTAAATGTGTGCCTGCTACCGTTTGCTGCTCCTGCCGCAGT
CGAGATTCAAGTTTGTGTCGCGCGGAAACGAATTGATGTGGGTAAGCACC
CTTGTTTTAGGTTAACCTTTGCCCAGGTATGTACAGATATAGCTCCTCTA
ACGCCCTCCCCCCTTCCCTGCAGTGCATCTGTTGACATGGACCTTTGGTC
TGACTGTGGTGAAGACACGACGCTAGTTCGTGAAAAGAGGTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8875:4582..8127-

>mRNA_H-paniculata_contig8875.16764.1 ID=mRNA_H-paniculata_contig8875.16764.1|Name=mRNA_H-paniculata_contig8875.16764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig8875:4582..8127- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGGGGAGCGGGGAGGGCGCCGGGGGGGGGAAGTTGCCGTGCGTGAC
CGCGCGAGAGGAGGAGGGGAGCGGGGAGGGCGCCGGGGGGGGGAAGTTGC
CGTGCGTGACCGCGCGAGAGCCTCTGCAAGGTTCGGGAGTGAGCGGACGC
GTCGCGCGACGGGCGTTGCGAATAGCGGATTGGCACGAGAACGGTTGCCT
GGAGCGAGACGAATTTGCCTTGGCCATCCTCTGCAAGGTTCGGGAGTGAG
CGGACGCGTCGCGCGACGGGCGTTGCGAATAGCGGATTGGCACGAGAACG
GTTGCCTGGAGCGAGACGAATTTGCCTTGGCCATGTACCTCTGCCGACGA
CATCGCGAGGGCGAAGGAATTCCCTCGAGGCTGGAGTCGTGGATGATACC
GCCTCGGCTGCGTGAAACCCGGGGATGTACCCCAGAGAACCCCTGTCCAG
CGCTTCGAAGGCGGTGGTTATGAGTACCTCTGCCGACGACATCGCGAGGG
CGAAGGAATTCCCTCGAGGCTGGAGTCGTGGATGATACCGCCTCGGCTGC
GTGAAACCCGGGGATGTACCCCAGAGAACCCCTGTCCAGCGCTTCGAAGG
CGGTGGTTATGA
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