mRNA_H-paniculata_contig8864.16755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8864.16755.1
Unique NamemRNA_H-paniculata_contig8864.16755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.260e-14
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQR 126
            QAG KPTTDFGACRDLQGRRLRHVNDEVRLQKW+E R
Sbjct:  130 QAGAKPTTDFGACRDLQGRRLRHVNDEVRLQKWQENR 166
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A448ZJ27_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ27_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.990e-12
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKE 120
            QAG K TTDFGACRDLQGRRLRHVNDE++L+KW+E
Sbjct:  121 QAGAKMTTDFGACRDLQGRRLRHVNDEIKLRKWRE 155
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: K0RYG9_THAOC (SPRY domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RYG9_THAOC)

HSP 1 Score: 65.1 bits (157), Expect = 4.280e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQRCERE 138
            QAG K T DFGACRDL GRRLRHVNDE++L+KW+E + +RE
Sbjct:  142 QAGAKQTLDFGACRDLSGRRLRHVNDEIKLRKWRELQAKRE 182
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A1V9YML9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YML9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.290e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   19 AGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQRCERE 138
            AG+KPTTDFGACRDL GRRLRHVN E+ +QKW E+   RE
Sbjct:   92 AGQKPTTDFGACRDLSGRRLRHVNQEIAMQKWTEEEALRE 131
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A7S2L1W0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L1W0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.010e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQRCERE 138
            QAG K T DFGACRDL GRRLRHVNDEV+L+KW+E + +RE
Sbjct:   97 QAGAKTTLDFGACRDLSGRRLRHVNDEVKLRKWRELQQKRE 137
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A067C135_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C135_SAPPC)

HSP 1 Score: 64.3 bits (155), Expect = 8.010e-11
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   19 AGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQ 123
            AG+KPTTDFGACRDL GRRLRHVN E+ +QKW E+
Sbjct:   91 AGQKPTTDFGACRDLSGRRLRHVNQEIAIQKWNEE 125
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: I2CPU7_NANGC (Ubiquitin family protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CPU7_NANGC)

HSP 1 Score: 62.4 bits (150), Expect = 1.680e-10
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 AGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKE 120
            AG K TTDFGACRDL GRRLRHVNDE+RL+KW E
Sbjct:  190 AGVKQTTDFGACRDLYGRRLRHVNDEIRLKKWLE 223
[Close]
BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A6T7JWW0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JWW0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.040e-10
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKE 120
            QAG K T DFGACRDL GRRLRHVNDE++L+KW+E
Sbjct:   20 QAGAKTTLDFGACRDLNGRRLRHVNDEIKLRKWRE 54
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BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A6U6JWR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6JWR5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.250e-10
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKE 120
            QAG K T DFGACRDL GRRLRHVNDEV+L+KW++
Sbjct:  146 QAGAKTTLDFGACRDLSGRRLRHVNDEVKLRKWRD 180
[Close]
BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Match: A0A7S4T799_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T799_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.080e-10
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 QAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKE 120
            +AG K T DFGACRDL GRRLRHVNDE++L+KW++
Sbjct:  109 RAGAKTTVDFGACRDLSGRRLRHVNDEIKLRKWRD 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8864.16755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW6_ECTSI3.260e-1491.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A448ZJ27_9STRA8.990e-1282.86B30.2/SPRY domain-containing protein n=1 Tax=Pseud... [more]
K0RYG9_THAOC4.280e-1170.73SPRY domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A1V9YML9_9STRA4.290e-1172.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2L1W0_9STRA8.010e-1173.17Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A067C135_SAPPC8.010e-1177.14Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
I2CPU7_NANGC1.680e-1082.35Ubiquitin family protein (Fragment) n=2 Tax=Nannoc... [more]
A0A6T7JWW0_9STRA2.040e-1077.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U6JWR5_9STRA2.250e-1077.14Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4T799_9STRA4.080e-1071.43Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8864contigH-paniculata_contig8864:9085..9222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog2880.D8LEW6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cell cycle
EggNOG OGsKOG2242@1,KOG2242@2759,KOG2827@1,KOG2827@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.2281978-CDS-H-paniculata_contig8864:9084..92221622931109.2281978-CDS-H-paniculata_contig8864:9084..9222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 9085..9222 +
1691481594.330379-CDS-H-paniculata_contig8864:9084..92221691481594.330379-CDS-H-paniculata_contig8864:9084..9222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 9085..9222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8864.16755.1prot_H-paniculata_contig8864.16755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8864 9085..9222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8864.16755.1

>prot_H-paniculata_contig8864.16755.1 ID=prot_H-paniculata_contig8864.16755.1|Name=mRNA_H-paniculata_contig8864.16755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MNNILQAGKKPTTDFGACRDLQGRRLRHVNDEVRLQKWKEQRCERE
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mRNA from alignment at H-paniculata_contig8864:9085..9222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8864.16755.1 ID=mRNA_H-paniculata_contig8864.16755.1|Name=mRNA_H-paniculata_contig8864.16755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig8864:9085..9222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAATATACTGCAGGCGGGTAAAAAGCCCACGACTGACTTCGGTGC
GTGTCGTGACCTGCAAGGGCGACGGCTGAGGCATGTGAATGACGAAGTGC
GCCTTCAAAAGTGGAAGGAACAAAGGTGTGAAAGAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8864:9085..9222+

>mRNA_H-paniculata_contig8864.16755.1 ID=mRNA_H-paniculata_contig8864.16755.1|Name=mRNA_H-paniculata_contig8864.16755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig8864:9085..9222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAATATACTGCAGGCGGGTAAAAAGCCCACGACTGACTTCGGTGC
GTGTCGTGACCTGCAAGGGCGACGGCTGAGGCATGTGAATGACGAAGTGC
GCCTTCAAAAGTGGAAGGAACAAAGGTGTGAAAGAGAAATGAACAATATA
CTGCAGGCGGGTAAAAAGCCCACGACTGACTTCGGTGCGTGTCGTGACCT
GCAAGGGCGACGGCTGAGGCATGTGAATGACGAAGTGCGCCTTCAAAAGT
GGAAGGAACAAAGGTGTGAAAGAGAA
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