mRNA_H-paniculata_contig8855.16751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8855.16751.1
Unique NamemRNA_H-paniculata_contig8855.16751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: D7G9F4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9F4_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 5.100e-100
Identity = 164/207 (79.23%), Postives = 174/207 (84.06%), Query Frame = 2 
Query:    8 WMPGTVSAQRAKESWRGKQEMRDFRKFKPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFANDPDSPDA 628
            WMPGTVSAQR KESWR KQEMRD R+FKPFFVQAKTDFTATYRLL+DC LGEG+YASV+LA+H+K                       RGE VAVKAVQKRLLFSD+EKKSV AEIDNQLRIVHKHVVRLYEVYETPD VFIVLENCPCGDLEKM+YLRGRLTEIEAKRV MQLLEG+ YLHSKGIVHCDIKPQNLLFA DPD+PDA
Sbjct:  592 WMPGTVSAQRTKESWRSKQEMRDCREFKPFFVQAKTDFTATYRLLDDCRLGEGAYASVFLAEHLK-----------------------RGEDVAVKAVQKRLLFSDAEKKSVGAEIDNQLRIVHKHVVRLYEVYETPDKVFIVLENCPCGDLEKMLYLRGRLTEIEAKRVVMQLLEGVSYLHSKGIVHCDIKPQNLLFAPDPDNPDA 775
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: A0A835ZDX2_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX2_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.680e-60
Identity = 116/202 (57.43%), Postives = 137/202 (67.82%), Query Frame = 2 
Query:    5 TWMPGTVSAQRAKESWRGKQEMRDFRKFKPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAND 610
            TW PGTVSAQ  KESW+ KQ MRD  KFK FFVQAK+     Y L  D LLG+GSYA V L +H                       M  G+LVA+KAVQKRLLFSDSEK  V  E++NQLRIVH+H+VRLYEVYETP+++++VLE         M+Y+RG L EIEAKRV  QLL+ + YLH+KGIVHCDIKPQNLLF +D
Sbjct:  407 TWFPGTVSAQLKKESWKNKQTMRDTSKFKTFFVQAKSQIHDAYDLYQDRLLGQGSYAKVILGRH-----------------------MSTGQLVAIKAVQKRLLFSDSEKACVLHEVENQLRIVHRHIVRLYEVYETPNHLYLVLE---------MIYMRGFLKEIEAKRVAKQLLQAVAYLHAKGIVHCDIKPQNLLFTHD 576
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: A0A7S3XRG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRG1_HETAK)

HSP 1 Score: 133 bits (334), Expect = 2.270e-33
Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 2 
Query:   98 FVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIV-HKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFANDPD 616
            +V         Y L ++   GEGS+A+VYLA H                          G  VA+K ++KR LFS++EK SV  EI+N  R   H+++  L+E++ETPD++ +V+E   CGDLEKM+  R  LTE+EAKRV  QLLEGL  +H + +VH D+KP N+LFA+DP+
Sbjct:   37 YVMQDDAHMGNYTLKDNFEFGEGSFAAVYLATH-----------------------KDTGVKVAIKQIKKRYLFSENEKASVWREIENHQRASNHRNITTLFEIFETPDHINMVIELADCGDLEKMLQTRRTLTEVEAKRVVKQLLEGLKNVHEQDLVHLDLKPANILFAHDPE 187
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: D7FJF9_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF9_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.540e-32
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 2 
Query:  152 LLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAN 607
            +LG G+Y +V  A H                          G  VA+K + K+ L SD+EK SV  EI+ Q R+V+ HVVRLYE+Y++P+ +++V+E  PCG LE+ +  R R+TE++AKRV  QLL+GL YLH  G+VHCD+KP N+LF++
Sbjct:  532 MLGAGAYGTVLAAVH-----------------------RSTGRQVAIKTMLKKYLLSDAEKASVEREIEIQKRLVNNHVVRLYEIYQSPEQIYLVVERAPCGSLEEFLNARWRMTELDAKRVVRQLLDGLAYLHKSGVVHCDLKPANILFSD 660
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: W7U927_9STRA (Protein kinase nu n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U927_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.930e-27
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 2 
Query:  152 LLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIV-HKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFANDPDSPDAAA 634
            +LGEGSYA+VY   H    +                        VAVKA+++R LF++ EK SVR EI+N  RI  H++V+RL E +ET ++V++V++    G+LE+M+ +R +LTE+E   V  Q+L+ +D LH  G++HCD+KPQNLLF++  D    AA
Sbjct:  624 VLGEGSYAAVYGGVHRASQD-----------------------QVAVKAIKRRYLFTEEEKASVRNEIENMRRIPPHRNVIRLRECFETVEHVYLVMDRSTHGNLEQMLQIRRKLTELETMWVVKQMLDAVDLLHRSGVLHCDLKPQNLLFSDFDDGIALAA 762
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: A0A4D9DE44_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE44_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.190e-27
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 2 
Query:  152 LLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIV-HKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFANDPDSPDAAA 634
            +LGEGSYA+VY   H    +                        VAVKA+++R LF++ EK SVR EI+N  RI  H++V+RL E +ET ++V++V++    G+LE+M+ +R +LTE+E   V  Q+L+ +D LH  G++HCD+KPQNLLF++  D    AA
Sbjct:  611 VLGEGSYAAVYGGVHRASQD-----------------------QVAVKAIKRRYLFTEEEKASVRNEIENMRRIPPHRNVIRLRECFETVEHVYLVMDRSTHGNLEQMLQIRRKLTELETMWVVKQILDAVDLLHRSGVLHCDLKPQNLLFSDFDDGIALAA 749
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: A0A662Y2R7_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2R7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.630e-25
Identity = 67/182 (36.81%), Postives = 101/182 (55.49%), Query Frame = 2 
Query:   89 KPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFANDPDSPDAAA 634
            KP+F+  K   T  Y L+ +  LG+GSYA V  A                       +R   G+ VA+K + KR L ++  K +V  EI+  LR+ HKH+VRLYEVYETPD +++V+     G+L+ +M  + RL+E  A +++ Q++  + +LH  G++HCD+KP NLL  ND   P   A
Sbjct:  385 KPYFIHEKA-VTEQYELVGEDQLGDGSYAVVKPA-----------------------IRRVNGKEVAIKQIHKRYLRTEDAKSAVGREIEIHLRLRHKHIVRLYEVYETPDFLYLVMAKATKGNLKALMERKRRLSEALAGKLSQQIVRAVLFLHESGVLHCDLKPDNLLL-NDAKYPSQDA 541
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: A0A2P4XTY5_9STRA (Protein Kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTY5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.840e-25
Identity = 61/173 (35.26%), Postives = 98/173 (56.65%), Query Frame = 2 
Query:   89 KPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAN 607
            KP+F+  K   T  Y L+ +  LG+GSYA V  A                       +R   G+ VA+K + KR L  ++ K +V  EI+  LR+ HKH+VRLYEVYETP+ +++V+     G+L+ +M  +  L E  A +++ Q++ G+ +LH  G++HCD+KP N+L ++
Sbjct:  324 KPYFIHEKA-VTEQYELVGEDQLGDGSYAVVKPA-----------------------IRRVNGKEVAIKQIHKRFLRDEAAKNAVSREIEIHLRLRHKHIVRLYEVYETPEFLYLVMAKATKGNLKSLMQRKRMLPEALAGKLSQQIVRGVLFLHDMGVLHCDLKPDNILLSD 472
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: H3GCF9_PHYRM (Protein kinase domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GCF9_PHYRM)

HSP 1 Score: 113 bits (282), Expect = 5.540e-25
Identity = 65/194 (33.51%), Postives = 105/194 (54.12%), Query Frame = 2 
Query:   26 SAQRAKESWRGKQEMRDFRKFKPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAN 607
            +AQ  K    G     ++   KP+F+  K   T  Y L+ +  LG+GSYA V  A                       +R   G+ VA+K + KR L  ++ K +V  EI+  LR+ HKH+VRLYEVYETPD +++V+     G+L+ +M  +  L+E  A +++ Q++  + +LH  G++HCD+KP N+L ++
Sbjct:  358 TAQVLKNDHVGSDSEDEYNHPKPYFIHEKA-VTEQYELVGEDQLGDGSYAVVKPA-----------------------IRRVNGKEVAIKQIHKRFLRDEAAKNAVSREIEIHLRLRHKHIVRLYEVYETPDFLYLVMAKATKGNLKSLMQRKRMLSEALAGKLSQQIVRAVLFLHDMGVLHCDLKPDNILLSD 527
[Close]
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Match: M4C1F5_HYAAE (Putative serine/threonine protein kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1F5_HYAAE)

HSP 1 Score: 112 bits (281), Expect = 6.460e-25
Identity = 65/194 (33.51%), Postives = 104/194 (53.61%), Query Frame = 2 
Query:   26 SAQRAKESWRGKQEMRDFRKFKPFFVQAKTDFTATYRLLNDCLLGEGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKRLLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGDLEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAN 607
            +AQ  K    G     ++ + KP+F+  K   T  Y L+ +  LG+GSYA V  A                       +R   G+ VA+K + KR L  ++ K +V  EI+  LR+ HKH+VRLYEVYETPD +++V+     G+L+ +M  +  L E  A +++ Q+   + +LH  G++HCD+KP N+L ++
Sbjct:  266 TAQVLKNDDHGSDSEDEYNQPKPYFIHEKA-VTEQYELVGEDQLGDGSYAVVKPA-----------------------IRRVNGKEVAIKQIHKRFLRDEAAKNAVSREIEIHLRLRHKHIVRLYEVYETPDFLYLVMAKATKGNLKSLMERKRMLPEALAGKLSQQIARAVVFLHDMGVLHCDLKPDNILLSD 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8855.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9F4_ECTSI5.100e-10079.23Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZDX2_9STRA2.680e-6057.43Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S3XRG1_HETAK2.270e-3341.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FJF9_ECTSI1.540e-3243.42Protein kinase domain-containing protein n=2 Tax=E... [more]
W7U927_9STRA5.930e-2740.74Protein kinase nu n=1 Tax=Nannochloropsis gaditana... [more]
A0A4D9DE44_9STRA6.190e-2740.74Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A662Y2R7_9STRA1.630e-2536.81Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A2P4XTY5_9STRA4.840e-2535.26Protein Kinase (Fragment) n=1 Tax=Phytophthora pal... [more]
H3GCF9_PHYRM5.540e-2533.51Protein kinase domain-containing protein n=17 Tax=... [more]
M4C1F5_HYAAE6.460e-2533.51Putative serine/threonine protein kinase n=1 Tax=H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8855contigH-paniculata_contig8855:4687..8726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue5.2e-85
Seed eggNOG ortholog2880.D7G9F4
Preferred nameCDPK1
KEGG koko:K00924,ko:K02183,ko:K04515,ko:K06180,ko:K08794,ko:K13412
KEGG Pathwayko04012,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04066,ko04070,ko04114,ko04217,ko04218,ko04261,ko04270,ko04310,ko04360,ko04371,ko04626,ko04713,ko04720,ko04722,ko04725,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04911,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04934,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05145,ko05152,ko05167,ko05200,ko05205,ko05214,ko05418,map04012,map04014,map04015,map04016,map04020,map04022,map04024,map04066,map04070,map04114,map04217,map04218,map04261,map04270,map04310,map04360,map04371,map04626,map04713,map04720,map04722,map04725,map04728,map04740,map04744,map04745,map04750,map04910,map04911,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04934,map04970,map04971,map05010,map05031,map05034,map05133,map05145,map05152,map05167,map05200,map05205,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0002831,GO:0002832,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0004697,GO:0004698,GO:0004713,GO:0004721,GO:0004722,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009314,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009416,GO:0009506,GO:0009555,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009751,GO:0009755,GO:0009787,GO:0009789,GO:0009931,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010119,GO:0010150,GO:0010152,GO:0010243,GO:0010286,GO:0010359,GO:0010646,GO:0010647,GO:0010769,GO:0010857,GO:0010959,GO:0012505,GO:0014070,GO:0016020,GO:0016036,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0018105,GO:0018108,GO:0018193,GO:0018209,GO:0018212,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0021700,GO:0022603,GO:0022604,GO:0022898,GO:0023051,GO:0023052,GO:0023056,GO:0030054,GO:0031090,GO:0031347,GO:0031348,GO:0031667,GO:0031668,GO:0031669,GO:0031903,GO:0031984,GO:0032101,GO:0032102,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0033554,GO:0033993,GO:0034762,GO:0034765,GO:0035556,GO:0036211,GO:0040008,GO:0042175,GO:0042221,GO:0042493,GO:0042578,GO:0042579,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043266,GO:0043269,GO:0043412,GO:0043900,GO:0043901,GO:0044070,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0046677,GO:0046777,GO:0046872,GO:0046898,GO:0047484,GO:0048229,GO:0048366,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048585,GO:0048638,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051128,GO:0051239,GO:0051510,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060284,GO:0060688,GO:0060992,GO:0065007,GO:0065009,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071496,GO:0071704,GO:0071944,GO:0080092,GO:0080134,GO:0090693,GO:0097305,GO:0097306,GO:0098542,GO:0098588,GO:0098805,GO:0098827,GO:0099402,GO:0140096,GO:1900424,GO:1900425,GO:1900618,GO:1901000,GO:1901001,GO:1901002,GO:1901016,GO:1901379,GO:1901419,GO:1901421,GO:1901564,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1901979,GO:1902456,GO:1902584,GO:1903959,GO:1904062,GO:1905428,GO:1905957,GO:1905959,GO:2000026,GO:2000032,GO:2000070,GO:2000241,GO:2001257
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17,5.4.99.23
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009,ko03036,ko04131,ko04147
Exons6
Model size721
Cds size711
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.824387-CDS-H-paniculata_contig8855:4686..49211622931108.824387-CDS-H-paniculata_contig8855:4686..4921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 4687..4921 -
1691481594.145728-CDS-H-paniculata_contig8855:4686..49211691481594.145728-CDS-H-paniculata_contig8855:4686..4921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 4687..4921 -
1622931108.8415165-CDS-H-paniculata_contig8855:5609..57141622931108.8415165-CDS-H-paniculata_contig8855:5609..5714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 5610..5714 -
1691481594.158608-CDS-H-paniculata_contig8855:5609..57141691481594.158608-CDS-H-paniculata_contig8855:5609..5714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 5610..5714 -
1622931108.860484-CDS-H-paniculata_contig8855:6034..61441622931108.860484-CDS-H-paniculata_contig8855:6034..6144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 6035..6144 -
1691481594.1708908-CDS-H-paniculata_contig8855:6034..61441691481594.1708908-CDS-H-paniculata_contig8855:6034..6144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 6035..6144 -
1622931108.8732867-CDS-H-paniculata_contig8855:6447..65161622931108.8732867-CDS-H-paniculata_contig8855:6447..6516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 6448..6516 -
1691481594.1789415-CDS-H-paniculata_contig8855:6447..65161691481594.1789415-CDS-H-paniculata_contig8855:6447..6516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 6448..6516 -
1622931108.8853765-CDS-H-paniculata_contig8855:8108..82041622931108.8853765-CDS-H-paniculata_contig8855:8108..8204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 8109..8204 -
1691481594.1869645-CDS-H-paniculata_contig8855:8108..82041691481594.1869645-CDS-H-paniculata_contig8855:8108..8204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 8109..8204 -
1622931108.8998945-CDS-H-paniculata_contig8855:8620..87161622931108.8998945-CDS-H-paniculata_contig8855:8620..8716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 8621..8716 -
1691481594.1950393-CDS-H-paniculata_contig8855:8620..87161691481594.1950393-CDS-H-paniculata_contig8855:8620..8716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8855 8621..8716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.9187942-UTR-H-paniculata_contig8855:8716..87261622931108.9187942-UTR-H-paniculata_contig8855:8716..8726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8855 8717..8726 -
1691481594.203465-UTR-H-paniculata_contig8855:8716..87261691481594.203465-UTR-H-paniculata_contig8855:8716..8726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8855 8717..8726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8855.16751.1prot_H-paniculata_contig8855.16751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8855 4687..8716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8855.16751.1

>prot_H-paniculata_contig8855.16751.1 ID=prot_H-paniculata_contig8855.16751.1|Name=mRNA_H-paniculata_contig8855.16751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MPGTVSAQRAKESWRGKQEMRDFRKFKPFFVQAKTDFTATYRLLNDCLLG
EGSYASVYLAQHIKEHEIVRFIGGNFLFLWPQVMRMKRGELVAVKAVQKR
LLFSDSEKKSVRAEIDNQLRIVHKHVVRLYEVYETPDNVFIVLENCPCGD
LEKMMYLRGRLTEIEAKRVTMQLLEGLDYLHSKGIVHCDIKPQNLLFAND
PDSPDAAADAAAEEAAEAAAAAKAASVVGGSGGAVAA
back to top

mRNA from alignment at H-paniculata_contig8855:4687..8726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8855.16751.1 ID=mRNA_H-paniculata_contig8855.16751.1|Name=mRNA_H-paniculata_contig8855.16751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4040bp|location=Sequence derived from alignment at H-paniculata_contig8855:4687..8726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACGTGGATGCCGGGGACGGTGTCTGCTCAACGTGCTAAGGAGAGCT
GGCGAGGAAAGCAAGAGATGAGAGACTTCAGAAAGTTTAAACCGTTTTTT
GTTCAGGTATAGTGCTGTGTAGGATGTAAAATACATGGGAATAAAACGGG
TACATATGATATAGCGGATTGAAACGGGTACAGTTACGGAGAGTAAGTAC
AGTGGAACCATTCTTCTTGACGGAACATGATCCCGCCTACATATGTTTCA
TACAGATTCGGTTGAGAGCGAAAGTCGTTTTCCTGCATCGTGTGTATTTG
TTTGATGGTATCTTGTTTATATTCGTGAATTGATTCATGATAATATGCTT
CCGTGTATCCTGCGATTTCTCGTTTTGTGTTTTTTGTTACTCATGAATTT
AGAATCTTTTTTTTCTCTTTTTTCTTGTGTTTTGTTCTTCTTTCTGTGGC
TATACCCGAACGTTTTGTTTGTTTTGTTGTACCGTTTTCAAATGCTGTAT
CGACTGGAACGAACAAATGCAGGCAAAAACAGACTTCACGGCTACGTACC
GGCTTCTAAACGACTGCTTGCTGGGGGAGGGATCTTACGCCAGCGTTTAT
CTCGCGCAGCACATCAAGGTGCGTCGTGAAGTAGCGTGATTTTTCGTGTA
CATCCTTCGTTTTTACCTCAGAGCGGTAAGGTTGTGGTCGTTATCTCGGA
ACAATTTTGAAGTCTTTACTTAGGTAACTTCTAAAATATGACTCTTGTTG
CGAGCGTAGCACGCCGTTGTGGATGGGCCGAGGACGAAGCACGGACTGCA
GTATGATTGAATAAGCCATGGCTTTGGTGCTAATCCCCATTATTCATTAC
ACTAAGGTGAGCTAATTTGGTATGATGCTGGCCTGTCTACAGGTGGCGAC
GGGGTCTGAGGCACTGGCCCGGTGGTCCATTGACCTACCACTAGTAGTAT
CATGTTGCTCAACCAATCCATGACCCAACGATCCATGTAGAAATGGTTTA
GGACTACTGTAGAGTTATGATCATACCGTAATGTACGGCGATGTCGCACC
CACCCCCTCTTATTGTGGTTCAAACTTGATTTTCTAGAGAAGCAAGAGCC
TGCTTTGCCTAAACAGCTTTCCAAAGATGCCGCTATCAGTGTAATGAGCA
CGGTCATTGTCAAGAACATCGAGTGTGGATAAGGACATCTCATCGGTGGT
GCCAAATGAGAAGGTCCTTGTTCTTTCACCCAAAGCCCCAGACGCCACCG
AAGCCTCCGATAGGTAGCGCTCAAGTCCTTTCGTATTGTGTGGGCAAGGA
ATGGCAAGTTACTAAACCGGCTAGGGGCAGAACTCATAGAGTCAAGAGTC
GGATAACAGGGAATTCTCTTGGGAACTCTGCGTTCAGGTCTCTTTCAGTA
TTTGTATGTGAAGATCCATTGGATTGAGTGGCTCAGACTAAGAGTCTCTC
CGAAAGAAGCCCCTTTTTGTCAGTTCGGAAACCGGCGATGAATTTCTATC
TATGTTTATTACATGTGTATAATGGAATCTCCGACATGAGCTACTTCTCC
GAAGACCCTGGCTTCCGCATATTGCCGTATTCCTTCTCGGGGAAGTTATC
ACCTAGTACCTATACCTTTCACCTACCGAGATTCTCGATCGTAAATCAAC
TCAATCACTTGGCACAGTTAGTAGAACTAAGCTTTAAACTTCATATGATA
ACTTCATTGTTTCCATGTTGAGGCTATGGCGCTGACATCAAGCTTCACTT
CTCTACGCTTATCAGAAAAATAGACCAATCATCGGGGGGTCGTTACTTCG
GTCAAAATTGGAAGATGACCTATGCACTGTGCGACGGATGCCGCACCCAA
TGAACCAAATAGTGGTACTGTAACACCCCTTTGATATCGCACTCCCCTGA
TATTTTTTTCAAAGTCGATTTTCTCGATAAGAATGGTGTTTGCTCGTGAC
ACTCACTGATGGCGTTATCGTAGGAAAGGTCTCGTTGAGATCTTTCGATA
GACCTGCTGTTTCGGCAGTGCAGGCTCTTCCTTGTCGAGAAAGTTTGGTT
TGAAAAGTACTCGGGGTATGCGATACCAAAGGATGTTACGGTAGCTCGTT
TTACTCGAATCGTTTTCAATAGTGAATCGGAACAAGGGCAACCGTTAGGC
TTATCCCACAAAAAACCGGTCGCGTGCTCCTCTTGACCTCGGCTGCCGTG
CTCTCGTAAGGAGCATGAGATAGTGCGGTTCATCGGGGGGAATTTTCTTT
TTTTGTGGCCACAGGTCATGAGAATGAAGGTGCGACTTGGTGAAGACGAC
AGGGAAGCTGGAATTTGCTAACCCACAGCGCGTTCGGCCAAGTCGACTTA
GATATCTCACGATCGGGATAGCTAGGCCATAGCTACTTACTTACCTACAG
GCAACTCTAGGTATATGCCGGCGTGCTGTTTATGTTCGCTTTCGTGCGCT
ATTTCGTTGTTTACTTGTCATTCATCTCTTGTCTACCCCCCTAATTCCGA
ATGTGATGGCGTCATTGCGTAACGTCATACGATGTTATGGTGTGGACAAC
AAAATGTGTCTCTGGTGAATGACGAAATGTAGCGTGGAGAGCTCGTGGCC
GTTAAGGCTGTCCAGAAGAGACTACTGTTCAGCGACAGCGAGAAAAAAAG
CGTGAGGGCAGAGATCGACAATCAGCTCAGGATTGTGCACAAGTGAGTCG
ACAAGTGTGCAGTATATTGGATGTATTGGGTAGTATTCGAGTGAGGTATA
CTGTAGTCCATACTTTGTTGTACCGTACTTTGGTGACGAGTAACTCATTT
CGAGTTTTTGATATTTCGGAATGTGATGGCGAAGCAAGGTGTTGATTCAT
GACACAAAGTGTTGTTGATCTCACGTGTGATCTAATGTTGATCTCTCATG
TTGGTGGTGTGGTGATGACGAAACTGTTGAAGTCAGGCACGTGCTACGAC
TGTATAATATTTAGTTAATCTGATGTTGATCTGATGTTGATGGTGCATGT
TACATTGATCAGACACGTGGTGCGATTGTACGAGGTTTACGAAACCCCGG
ACAACGTATTCATTGTGCTCGAGAATTGCCCGTGCGGAGACCTGGAGAAG
ATGATGTACCTAAGAGGGTGAGTCGTGTACCGTACTGCTCATACTCCAGA
GTCGTGTACTGTACTCGTCATACTCCAGAGTCGTTTACCGTACTCGTCAT
ACTCCAGAGTCGTTTACCGTACCCGCCATACTCCAGAGTCGTGTACTGTA
CGCGTCATACTCCAGAGGATATCTATCACTCTGGATGACGAGCGCTTTTC
GTACTCATTTCTCTCTGGAAGAAGGACCAAGCACCTGCTGCACTATTGAA
ATATCACATGTATCTAATAGCAGATGTCGACCACAGATCTTGACAGCACA
GTAGGTGTACCAAAATTGAGTTTCATCCCAATATGGTTATTCGATATATG
TATAATTATCCCATGTTCTGTGTAATACGGTGTTGGAGAGGGTGGATGGT
GAACTCGAAATGAGTGACTCATATTCTTGAAGGACTGGGTGGGTGGTGGA
ATTTGAACGACTGAGTGGATGATTGATATGTCTCAGAGCGCGAGTCTTGT
GTTTTTCAGTTGATAACGTCTTCGGAGCACCACCCTATAAAAAACACAGT
TAACAGCAATGACATTCAAAGCACGTGTTTCTCCAGCTGCCGTTACCCAA
CGGAAGAAACACAAAAAGATTCCCCACATACACAAACATACATAGATGAA
CACCTATACACATGTGCCCTTCCATTGGTGGTATTAATACTGCATAATAA
CCCAGGCGACTGACGGAGATCGAAGCGAAGAGGGTGACGATGCAGCTCCT
TGAGGGTCTGGACTACCTGCACTCCAAGGGCATCGTACACTGTGACATCA
AACCCCAAAACCTCCTCTTCGCGAACGATCCAGATAGCCCCGACGCGGCT
GCTGACGCCGCAGCAGAAGAGGCCGCTGAGGCAGCCGCGGCGGCTAAGGC
CGCTAGCGTTGTTGGGGGGAGCGGGGGGGCGGTAGCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8855:4687..8726-

>mRNA_H-paniculata_contig8855.16751.1 ID=mRNA_H-paniculata_contig8855.16751.1|Name=mRNA_H-paniculata_contig8855.16751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig8855:4687..8726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGGGACGGTGTCTGCTCAACGTGCTAAGGAGAGCTGGCGAGGAAA
GCAAGAGATGAGAGACTTCAGAAAGTTTAAACCGTTTTTTGTTCAGATGC
CGGGGACGGTGTCTGCTCAACGTGCTAAGGAGAGCTGGCGAGGAAAGCAA
GAGATGAGAGACTTCAGAAAGTTTAAACCGTTTTTTGTTCAGGCAAAAAC
AGACTTCACGGCTACGTACCGGCTTCTAAACGACTGCTTGCTGGGGGAGG
GATCTTACGCCAGCGTTTATCTCGCGCAGCACATCAAGGCAAAAACAGAC
TTCACGGCTACGTACCGGCTTCTAAACGACTGCTTGCTGGGGGAGGGATC
TTACGCCAGCGTTTATCTCGCGCAGCACATCAAGGAGCATGAGATAGTGC
GGTTCATCGGGGGGAATTTTCTTTTTTTGTGGCCACAGGTCATGAGAATG
AAGGAGCATGAGATAGTGCGGTTCATCGGGGGGAATTTTCTTTTTTTGTG
GCCACAGGTCATGAGAATGAAGCGTGGAGAGCTCGTGGCCGTTAAGGCTG
TCCAGAAGAGACTACTGTTCAGCGACAGCGAGAAAAAAAGCGTGAGGGCA
GAGATCGACAATCAGCTCAGGATTGTGCACAACGTGGAGAGCTCGTGGCC
GTTAAGGCTGTCCAGAAGAGACTACTGTTCAGCGACAGCGAGAAAAAAAG
CGTGAGGGCAGAGATCGACAATCAGCTCAGGATTGTGCACAAACACGTGG
TGCGATTGTACGAGGTTTACGAAACCCCGGACAACGTATTCATTGTGCTC
GAGAATTGCCCGTGCGGAGACCTGGAGAAGATGATGTACCTAAGAGGACA
CGTGGTGCGATTGTACGAGGTTTACGAAACCCCGGACAACGTATTCATTG
TGCTCGAGAATTGCCCGTGCGGAGACCTGGAGAAGATGATGTACCTAAGA
GGGCGACTGACGGAGATCGAAGCGAAGAGGGTGACGATGCAGCTCCTTGA
GGGTCTGGACTACCTGCACTCCAAGGGCATCGTACACTGTGACATCAAAC
CCCAAAACCTCCTCTTCGCGAACGATCCAGATAGCCCCGACGCGGCTGCT
GACGCCGCAGCAGAAGAGGCCGCTGAGGCAGCCGCGGCGGCTAAGGCCGC
TAGCGTTGTTGGGGGGAGCGGGGGGGCGGTAGCGGCGGCGACTGACGGAG
ATCGAAGCGAAGAGGGTGACGATGCAGCTCCTTGAGGGTCTGGACTACCT
GCACTCCAAGGGCATCGTACACTGTGACATCAAACCCCAAAACCTCCTCT
TCGCGAACGATCCAGATAGCCCCGACGCGGCTGCTGACGCCGCAGCAGAA
GAGGCCGCTGAGGCAGCCGCGGCGGCTAAGGCCGCTAGCGTTGTTGGGGG
GAGCGGGGGGGCGGTAGCGGCG
back to top