mRNA_H-paniculata_contig8853.16749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8853.16749.1
Unique NamemRNA_H-paniculata_contig8853.16749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8853.16749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8853contigH-paniculata_contig8853:7788..9287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.7095463-CDS-H-paniculata_contig8853:7787..79491622931108.7095463-CDS-H-paniculata_contig8853:7787..7949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8853 7788..7949 +
1691481594.116254-CDS-H-paniculata_contig8853:7787..79491691481594.116254-CDS-H-paniculata_contig8853:7787..7949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8853 7788..7949 +
1622931108.7230194-CDS-H-paniculata_contig8853:9074..92871622931108.7230194-CDS-H-paniculata_contig8853:9074..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8853 9075..9287 +
1691481594.1274402-CDS-H-paniculata_contig8853:9074..92871691481594.1274402-CDS-H-paniculata_contig8853:9074..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8853 9075..9287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8853.16749.1prot_H-paniculata_contig8853.16749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8853 7788..9287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8853.16749.1

>prot_H-paniculata_contig8853.16749.1 ID=prot_H-paniculata_contig8853.16749.1|Name=mRNA_H-paniculata_contig8853.16749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
GGDGLDARPTDPSPSPRVDRLSLARDLANDSPVNVKLNEELESRAVGAAL
LQPQELEGGISLSPVRISRQKQYQQKKQHQQQKQQKRQQRPNHRDARSPR
RNWLGNLLAPSSESHMGERSPKMS*
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mRNA from alignment at H-paniculata_contig8853:7788..9287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8853.16749.1 ID=mRNA_H-paniculata_contig8853.16749.1|Name=mRNA_H-paniculata_contig8853.16749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig8853:7788..9287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGGATGGTTTGGATGCTCGGCCTACCGACCCTTCCCCCTCGCCACG
AGTGGACAGACTCAGCCTTGCCAGAGACCTTGCAAATGACAGCCCTGTAA
ACGTCAAGCTTAACGAAGAATTGGAAAGCAGGGCAGTGGGTGCTGCTTTG
CTACAACCACAGGTAAGTGGTCTGTTAAGCCGTATGAGTATACTCTAGCG
ATACGTGCAGAGCACCAGTAGAGGTGCTTCAACAACGACACTCATACGTT
TTCAGAAGGCCTTTCGTCGATCCATAGAGTGTTTCGCCCAGGTTGAGACT
AGGATTAGGTTGCGAATAGGGTCAGGGTTTGAGCTAGGAATAAGGATACG
AATCCATTCACAGGTGCAGTTACGGCTATGAATACGGATATGGTTACGGT
TACAGTTACTGTTATGACTATGTCTACGGTTGCGGCTACGGTTACCCCAA
TGGCTACGGGTATGGCTACGGCTACGGCTACGGCTACGGCTGTGGGTACG
GCTACGGGTACAGCTACAGGTACAGCTACAGGTACAATTTGGGGTCGGGG
TTACAACGGAGAAGCTAACGATAGACTATTGAATAGTCGTCGTCATTCGT
GTTTTAGCACCTCGACGATCGTTGAACGACCACACAAGTAGCGTTTAATG
GCTCGCTCTATCGTCTCGAGTAGTTTAGGTAGGGCTGTTAGCTGGATCGA
CTGTTGTTGTAGTTATAGTCCACTCGATAGTGCAGTAAGTTAAATTTTCC
AAGCGTACATAGTGGCCAAGCATCTGGGTGGATAAGCCACAGAGGCATGA
CCTTGTGCTTCGAGGGTACAACCTAATATGCGAAGGGCAAAATATTGTAA
TATATGGGATACGTAGCGTTAACTCGTGTTTTGCGTTCAGATCGATGTAA
AGCTCGGCAGCCTGACTACAAAAAGCCACAGATCTCATCCAAAGGAGAAG
AATCAATGGACATAAAAAAAGAAAAAAAGAGAAAAAGGCGGGGAAGTGAG
ATGTCCAGAGAATGACAGTAGTACCATTCTGTAATCATCGATAAGGATAT
CGTATTGCGAGCCGGACCGCAATCAACGCAATGTTGCATGTAACCAATTC
CACGTTGACAAGGGTACATGGTATGGGCACATCTTCATCTGCAAATTCAA
CCGTTACGTTTTGGAATGTCAACACCTTACCTCGGAAATGTTTGAGTACA
TGGAGCAAACTCTGATGATAGCTCAACTTGCCAGTTTCTATGCTCTACAA
GACCTTGTGTCGATACAACACGCAATGACTTGCGCAGGAACTTGAAGGGG
GCATCAGCCTGTCGCCGGTGCGAATTTCTCGGCAAAAACAATACCAACAA
AAAAAGCAACATCAACAACAAAAACAACAAAAGCGTCAACAACGACCTAA
TCATCGGGATGCGCGAAGTCCACGTCGAAACTGGTTAGGAAACCTTCTTG
CGCCTTCGTCAGAAAGCCATATGGGTGAGCGAAGCCCAAAAATGTCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8853:7788..9287+

>mRNA_H-paniculata_contig8853.16749.1 ID=mRNA_H-paniculata_contig8853.16749.1|Name=mRNA_H-paniculata_contig8853.16749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig8853:7788..9287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGGATGGTTTGGATGCTCGGCCTACCGACCCTTCCCCCTCGCCACG
AGTGGACAGACTCAGCCTTGCCAGAGACCTTGCAAATGACAGCCCTGTAA
ACGTCAAGCTTAACGAAGAATTGGAAAGCAGGGCAGTGGGTGCTGCTTTG
CTACAACCACAGGGCGGGGATGGTTTGGATGCTCGGCCTACCGACCCTTC
CCCCTCGCCACGAGTGGACAGACTCAGCCTTGCCAGAGACCTTGCAAATG
ACAGCCCTGTAAACGTCAAGCTTAACGAAGAATTGGAAAGCAGGGCAGTG
GGTGCTGCTTTGCTACAACCACAGGAACTTGAAGGGGGCATCAGCCTGTC
GCCGGTGCGAATTTCTCGGCAAAAACAATACCAACAAAAAAAGCAACATC
AACAACAAAAACAACAAAAGCGTCAACAACGACCTAATCATCGGGATGCG
CGAAGTCCACGTCGAAACTGGTTAGGAAACCTTCTTGCGCCTTCGTCAGA
AAGCCATATGGGTGAGCGAAGCCCAAAAATGTCATAAGAACTTGAAGGGG
GCATCAGCCTGTCGCCGGTGCGAATTTCTCGGCAAAAACAATACCAACAA
AAAAAGCAACATCAACAACAAAAACAACAAAAGCGTCAACAACGACCTAA
TCATCGGGATGCGCGAAGTCCACGTCGAAACTGGTTAGGAAACCTTCTTG
CGCCTTCGTCAGAAAGCCATATGGGTGAGCGAAGCCCAAAAATGTCATAA
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