mRNA_H-paniculata_contig8851.16748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8851.16748.1
Unique NamemRNA_H-paniculata_contig8851.16748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8851.16748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8851contigH-paniculata_contig8851:8345..9288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.5947845-CDS-H-paniculata_contig8851:8346..85401622931108.5947845-CDS-H-paniculata_contig8851:8346..8540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8851 8347..8540 -
1691481594.0761976-CDS-H-paniculata_contig8851:8346..85401691481594.0761976-CDS-H-paniculata_contig8851:8346..8540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8851 8347..8540 -
1622931108.607061-CDS-H-paniculata_contig8851:9227..92881622931108.607061-CDS-H-paniculata_contig8851:9227..9288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8851 9228..9288 -
1691481594.0860925-CDS-H-paniculata_contig8851:9227..92881691481594.0860925-CDS-H-paniculata_contig8851:9227..9288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8851 9228..9288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8851.16748.1prot_H-paniculata_contig8851.16748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8851 8347..9288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8851.16748.1

>prot_H-paniculata_contig8851.16748.1 ID=prot_H-paniculata_contig8851.16748.1|Name=mRNA_H-paniculata_contig8851.16748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
GRLSACWQKREDTAAERNRPGISDSNATPTSSLDTTDSSTPTSSHARTHS
SSSPPRRGGKIPTTRATRSPPPTSSVSREAQGNFG
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mRNA from alignment at H-paniculata_contig8851:8345..9288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8851.16748.1 ID=mRNA_H-paniculata_contig8851.16748.1|Name=mRNA_H-paniculata_contig8851.16748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at H-paniculata_contig8851:8345..9288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGACTCTCCGCGTGTTGGCAGAAGAGGGAGGACACCGCTGCAGAACG
GAACCGTCCAGGTAAACTGTATTGCACTCTCCACCCCCACACTTTCATTC
CCGCACCATCACCCTTCCCTTCGCTTGTGCTGGCGAGTGAGTGAGAGTCC
CGCATCGACCGAAGCTAGCAGTGCCCTTACCAGGCTGGATATTCGAACAT
GTGCGTGTTGCAGCGCAAGGCCTTGGTGCCGAGGGGGGCCTGTGCCTGTC
TCGACGTCTGAGTCGCGTCTGCCGTTTGTTCCTGCTTATTATTGGTGGTC
GTCGTGTTATTTGAACAACTGTAGTAGAATGGAGTGGTTTACTCTTGACC
AGTGTGCGCTGCTTACTGTTTGATTGCTTTCGCGGCTGTACGAATTGAGC
CGACAGCCTCCAGAGTGGGGCGGTACGCAGTGTGCTGTTGTTGTTGCTTG
CTGTGCATGTGCGTCGTTGCAGCGGTGACTGCCCTTGCCTGTAACATACG
GTGAGATGAACAAGTTTATGTGATGTCGCCGTATGCAGTACGCAATAGGG
TGAGTACCCTCTCTCCCTTGATGTTGTTGCATCACCATCGACAGCACGTA
TGTGGCAAGTAAGGGCGTGCCCGTAGGTGGTCCCGCATGCATGAAACCCC
TCACGCTATAGTTTTTAGGGTGTTGTGCATTGAAACGAACAGATCTATAT
TTGCACTACTTGTTTTCACGACCACGTCCATGCTCCTGACCACAGCAGGG
ATCAGCGACAGCAACGCGACGCCAACCTCGAGCCTGGATACCACAGACAG
CTCGACGCCAACCTCATCCCACGCACGGACACACTCAAGTTCTTCACCGC
CACGGAGAGGTGGTAAGATTCCGACGACGAGAGCGACCCGTTCACCACCT
CCTACTTCGTCCGTCAGCCGCGAGGCACAAGGCAATTTTGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8851:8345..9288-

>mRNA_H-paniculata_contig8851.16748.1 ID=mRNA_H-paniculata_contig8851.16748.1|Name=mRNA_H-paniculata_contig8851.16748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig8851:8345..9288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGACTCTCCGCGTGTTGGCAGAAGAGGGAGGACACCGCTGCAGAACG
GAACCGTCCAGGGGCGACTCTCCGCGTGTTGGCAGAAGAGGGAGGACACC
GCTGCAGAACGGAACCGTCCAGGGATCAGCGACAGCAACGCGACGCCAAC
CTCGAGCCTGGATACCACAGACAGCTCGACGCCAACCTCATCCCACGCAC
GGACACACTCAAGTTCTTCACCGCCACGGAGAGGTGGTAAGATTCCGACG
ACGAGAGCGACCCGTTCACCACCTCCTACTTCGTCCGTCAGCCGCGAGGC
ACAAGGCAATTTTGGGGGATCAGCGACAGCAACGCGACGCCAACCTCGAG
CCTGGATACCACAGACAGCTCGACGCCAACCTCATCCCACGCACGGACAC
ACTCAAGTTCTTCACCGCCACGGAGAGGTGGTAAGATTCCGACGACGAGA
GCGACCCGTTCACCACCTCCTACTTCGTCCGTCAGCCGCGAGGCACAAGG
CAATTTTGGG
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