mRNA_H-paniculata_contig8840.16743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8840.16743.1
Unique NamemRNA_H-paniculata_contig8840.16743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8840.16743.1 vs. uniprot
Match: A0A6H5KU96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU96_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.230e-60
Identity = 110/185 (59.46%), Postives = 137/185 (74.05%), Query Frame = 1 
Query:    1 NNPADLNPRMERAKKLVKATPPRGDEYLRMLQTVLHRESAWTQWKQVAKCQ-QIKTVPEIEAKQAADNAXXXXXXXXXXPAPSTRPALSGSKRQRPNAAKAAQERAKHAPLGSDFPLEQLVNNLRSGIPSSNEHLEDQRLCAEDPETPASELPSASPLYSWRALRLLGMDNPGNLEGCHDGDVVK 552
            N+  DL PR+E AK+LVKATPPRG+EYL MLQ VL+RE+ WTQWK V KC+  I    E EA+   D A          P          +KR RP+A+ AA+ERAK++PLG+DFPLE++ + LR+G+P+S EHLEDQR+CAEDP+TPASELPSASPLY+WRALRLLG +NP NL GC+DGD+VK
Sbjct:  247 NSVEDLKPRIELAKRLVKATPPRGEEYLSMLQIVLNRETFWTQWKDVNKCKLAITAAEEEEAQMEKDKAAGVVPRAPSYP----------NKRPRPSASVAARERAKYSPLGADFPLEKMASKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVK 421
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BLAST of mRNA_H-paniculata_contig8840.16743.1 vs. uniprot
Match: D7G2N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N9_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.720e-58
Identity = 109/185 (58.92%), Postives = 136/185 (73.51%), Query Frame = 1 
Query:    1 NNPADLNPRMERAKKLVKATPPRGDEYLRMLQTVLHRESAWTQWKQVAKCQQIKTVP-EIEAKQAADNAXXXXXXXXXXPAPSTRPALSGSKRQRPNAAKAAQERAKHAPLGSDFPLEQLVNNLRSGIPSSNEHLEDQRLCAEDPETPASELPSASPLYSWRALRLLGMDNPGNLEGCHDGDVVK 552
            N+  DL PR+E AK+LVKATPPRG+EYL MLQ VL+RE+ WTQWK V KC+   T   E E ++  D A          P          +KR RP+A+ AA ERAK++PLG+ FPLE++V+ LR+G+P+S EHLEDQR+CAEDP+TPASELPSASPLY+WRALRLLG +NP NL GC+DGD+VK
Sbjct:  530 NSVEDLKPRIELAKRLVKATPPRGEEYLSMLQVVLNRETFWTQWKDVNKCKLAMTAAKEEETQREKDKAAGVVARAPSYP----------NKRPRPSASVAAGERAKYSPLGAGFPLERMVSKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVK 704
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8840.16743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU96_9PHAE1.230e-6059.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2N9_ECTSI1.720e-5858.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8840contigH-paniculata_contig8840:251..4011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue5.2e-50
Seed eggNOG ortholog2880.D7G2N9
KEGG koko:K12878
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0000160,GO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009892,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031503,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035556,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071369,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097659,GO:0098542,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699
EggNOG free text desc.negative regulation of isotype switching to IgA isotypes
EggNOG OGsKOG2491@1,KOG2491@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons4
Model size552
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8840.16743.1prot_H-paniculata_contig8840.16743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8840 278..4011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.9264717-UTR-H-paniculata_contig8840:250..2771622931107.9264717-UTR-H-paniculata_contig8840:250..277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8840 251..277 +
1691481593.7570748-UTR-H-paniculata_contig8840:250..2771691481593.7570748-UTR-H-paniculata_contig8840:250..277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8840 251..277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.940703-CDS-H-paniculata_contig8840:277..3851622931107.940703-CDS-H-paniculata_contig8840:277..385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 278..385 +
1691481593.7685158-CDS-H-paniculata_contig8840:277..3851691481593.7685158-CDS-H-paniculata_contig8840:277..385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 278..385 +
1622931107.95441-CDS-H-paniculata_contig8840:1151..13731622931107.95441-CDS-H-paniculata_contig8840:1151..1373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 1152..1373 +
1691481593.777243-CDS-H-paniculata_contig8840:1151..13731691481593.777243-CDS-H-paniculata_contig8840:1151..1373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 1152..1373 +
1622931107.9691002-CDS-H-paniculata_contig8840:1883..19611622931107.9691002-CDS-H-paniculata_contig8840:1883..1961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 1884..1961 +
1691481593.7855015-CDS-H-paniculata_contig8840:1883..19611691481593.7855015-CDS-H-paniculata_contig8840:1883..1961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 1884..1961 +
1622931107.9882965-CDS-H-paniculata_contig8840:3894..40111622931107.9882965-CDS-H-paniculata_contig8840:3894..4011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 3895..4011 +
1691481593.8053198-CDS-H-paniculata_contig8840:3894..40111691481593.8053198-CDS-H-paniculata_contig8840:3894..4011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8840 3895..4011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8840.16743.1

>prot_H-paniculata_contig8840.16743.1 ID=prot_H-paniculata_contig8840.16743.1|Name=mRNA_H-paniculata_contig8840.16743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MERAKKLVKATPPRGDEYLRMLQTVLHRESAWTQWKQVAKCQQIKTVPEI
EAKQAADNAAAAAAAAPVAPAPSTRPALSGSKRQRPNAAKAAQERAKHAP
LGSDFPLEQLVNNLRSGIPSSNEHLEDQRLCAEDPETPASELPSASPLYS
WRALRLLGMDNPGNLEGCHDGDVVK
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mRNA from alignment at H-paniculata_contig8840:251..4011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8840.16743.1 ID=mRNA_H-paniculata_contig8840.16743.1|Name=mRNA_H-paniculata_contig8840.16743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3761bp|location=Sequence derived from alignment at H-paniculata_contig8840:251..4011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAACCCAGCCGATCTTAACCCGCGGATGGAGCGAGCTAAGAAGTTGGT
CAAGGCGACGCCTCCTAGAGGCGATGAATACCTTCGGATGCTTCAAACGG
TGCTGCACAGGGAGAGCGCGTGGACACAGTGGAAGGTGTAGAATGTAGAT
GGCTAGCCAAATACCTCGCCACCGTTCATGTGCTTGTGTTGCTTGCTAAA
CTGAAGACTTGCCCATTTTTTTTTTATTTTTTTCCCACCTATAGGTGTAC
ATGTTTTTCACGAGCTATGTAGACTTCAACGTTTACTACATTTTTATACG
TTTCATTTTGTGTTTTTGTAGCGTTATTGAATGCTTCGTTGTACAGCAAA
TTTGTCTTGTGTGACAAAATAGGGTGCTTGCATCGAATGAATTCCTTGTG
CAATTTTCGATTTGGTCGTATAAAGATGACAGTAGGCTATAGCTGCTCGT
CTTAGATTCTTCTTCCAACCCCCAGCTCACCCACGCCAACGGCTCGTTAC
GAAATATGTTATTTTTTTCACATCTTGCATCTTTTCTGAGATAGGAATAG
TTATCATTATCATTGGTTGTGACAAGGAATTGCTGGTTTTGTAATGAGAC
GTCTGTGTAGGTGGACTGGGGTCGGTAACGAGGAGCTAGCTCACTGTTAG
CCATGTATACACGACGACCAAATCGAAATTTGCAGGTCTTTTGTTTTGCG
CACACAATCTAATAGTTCTGTAATCTTTTTGGTTGTAAAATAAATGGTAC
ACGGGCGCGCGCACGCGCGTGTGTGTGTGTGTTTTAAGTACGTTCGTGTC
TTCACCTCTCTAGTCATTGTTTCCCTCCATCGCACACACATGTTGTTGTT
GTTTATTTCCTGAAAGTACTACATACGCTATTCGAATAACAAAAATTACA
GCAGGTTGCCAAGTGTCAACAGATCAAAACGGTGCCCGAGATAGAGGCCA
AACAAGCCGCCGATAACGCGGCCGCAGCAGCGGCTGCAGCGCCTGTTGCC
CCAGCGCCAAGCACACGGCCTGCGTTATCCGGCAGCAAGCGACAGAGACC
GAATGCTGCGAAGGCCGCGCAGGAGAGGGCGAAGCACGCGCCCCTCGGCA
GCGATTTTCCGTTGGAGCAGCTGGTGAGTAAGGAGCGGTGCTTATATTTA
GTTTTCGGATTAAGTGGATAAAAACTTTTCAGAAAAAAAAGAAAATCTCC
AAAGGGGAAAAATGGAAAGTTTTCAGTTAGTACTCACTGGTTCTTAGTTT
TCTTGTTTTTTTTTTGTTTTTGCTTTTGTTTTTGCTTTGCACTACTGGGG
ATGCAACTGACGGAGCATTGAAGTGGACAGGATAGATCCATGCAACCATA
TATTGTATTTTAAACCATGAAGTGATTGTACATATATGTATATATGTATA
TATGTATATATACATATATACATATATACATATATATACATATGCATATA
AATTCCGGAGTATGCAAAGATTTGTATAATGATTTTACAAGACTGAAAAC
AACAGTGCGAAGTTAGCTTGCAACGCTGCACAAGCTTCGATATTAACTTT
TGCGGCGTTTTTTTACGTTTTATTTATATATATATATATATATATTGGTG
TTCCGAAATGTACATGTGTTTTGCACGCGACAGGTGAACAACCTTCGCAG
CGGTATTCCCAGCTCCAATGAGCACCTGGAAGACCAACGCCTGTGTGCAG
AGGACCCGGAGGTAGGGTACGGTACGGTACGGCACGGTAATGAAGTAATG
AAGTAATGGATCAACAAAACCAGATCCACTCGATCGGGACAAATCAACGC
CTGGGAAATGACGTGCTTTTGGGGATGAAGAGCCGCCGCTTTTCCGACAG
TCAGGATAGGGGGCTAGCTGGTTCTGCGCATATCGATTGCAGCGCTCAAC
ATTTCTTAGTTGCAATTTTTCCCCCCGATAAAGCTTTGAAGCCCTTTGTA
CTCAAACGGATCTTGAAACGTATTTGAACAGTGAGGGTTTTTTCTTTTTC
ATGGGGGAACACTAAGGGTTACTGTGCTCCATCCAGAACGCAAAATCTTT
CATCTCGGAAGAAATAGTCCAGCAGGGTTTTAGGAACCACACTTAAGTTC
ACAACTGAAACAGGGATTTCTTAGCGAGAAATCATGAATAATGACGAAAG
TGTCTGTGCAATGCCTGGCGATCTCCGGGCGGCTGGTTAGTGTATTGTAT
GTCAGGTTCGATGGCGGCGGCGGCGGGGGGGGGGGGTTGTTTTAGAAGAT
GGGGACCGCATTATCTTGGATTTAGTATAGAGTCAAAACGTTGAACAAAA
ACATGAACGAAGTCCTGCTCTGCCGATTAACCCTCCAGGAACCGGAGCTC
GTAACATCCAAAAGAGACATTTGCTAAAGCGAAGTTGTGAATAATGACGA
CTACGTGGACGTAATGCCTTAACCAGCGCAAGACAGCTAGGTAGTGCATC
TCAGGTGCCAAAATAGTCCGTTTTTTGTCGTTTTGGGGGGGGGTTACGTT
GGATTTAGTGTCTGGCGCGAACAGGCAAACATCGGCTTGTTTCGTAACCG
CAAGTATTAACAAACACTCCACAGCTGATTGAGGGATCATAGGTTCTTAA
GGGGCTAAGGGATCATAGCCCCCTAGAGGGATTCCGAGTCCCTCGGTGTA
GATGCTGTCCATCATGCGGAGTAGATCTGTTGTGGAGATTGGGTATTTTG
TTTCTGTCAGATATACGTATAGTACACACACGAGTGATGCCGTGATGTGT
CGCTCAAGTCTTCTCATGTCTACGCAGAGTATGCACGCGAGTGATACCGT
GATGCTAGTATAGCGCAAGTAGTTATTGTTGTGCCTGTTTCAAGAGGTGC
GAGAAGGCCTGCTACTTGGTCGTGATGAGGGCATGACGTCTGTCTGTCAT
GTGACCGGTGTCGTGTTGGTTCACTGAGCAGCGTATTCAAACATCCTTCA
AGTCCATTCGAAATCCGGTTCACCTAGTGGTTTTGTGATGTTTGTTGTGA
ATGAGCTATAGCAGTGATGGAGAAGTAACACACCTCCCCCATCCCAGTTT
GTTCAGTTTGTGGATAATAACGAAGAAATCGAGCAACTTGAAGATATTGG
GCATACCACCCTTGAGTTTTATGGTGATTGTCGTGTTTCTATTTTACATG
AGCTGACTTATTTTCTACTCTATTTAGTCCATCATTTTTCCACAGATGTT
CTTCAAATCCTCTTATCATGGTGTAGAAGCTGTCCAGCTGGTGAAGCTGT
CCTCGGCAATTGGAGCATGTGGTGATGTCGCCATGTTGTAGTTGGTGGTA
GATTTCTTGCTACTACATGAAGTGCATTATTGGTCATCTTGTCACGGCTG
CATGTTGTTGCTGTTATGTATCATGAAGTGTGCAGATTGGCATCAGTCTT
GGACATCTTATGCACACAAGATATCTTATGCAATTCTTTATTTAGTAACC
TCCCCCCTCTCTCTACTTACCCACCCACTTGGTCGGTGTAGAAGTAGCCA
TCCGGAATTATTCGGTTGAGCGAGCTTGCCTCCAGTTTTGAAGGTTATTG
TCCTGCTGTGTGTGCATTGTACATTCATCCCCCGTCCCTTCCTCCCCTCT
TTGCCTCCTTCACTCTTCCGTCTGGCTGTCTTTTGTTACAACAGACACCA
GCATCTGAGCTCCCCAGCGCCAGCCCGTTGTACAGTTGGCGGGCGCTGCG
CTTGCTGGGCATGGATAACCCTGGCAATCTAGAGGGTTGCCACGACGGAG
ACGTCGTTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8840:251..4011+

>mRNA_H-paniculata_contig8840.16743.1 ID=mRNA_H-paniculata_contig8840.16743.1|Name=mRNA_H-paniculata_contig8840.16743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig8840:251..4011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGAGCTAAGAAGTTGGTCAAGGCGACGCCTCCTAGAGGCGATGA
ATACCTTCGGATGCTTCAAACGGTGCTGCACAGGGAGAGCGCGTGGACAC
AGTGGAAGATGGAGCGAGCTAAGAAGTTGGTCAAGGCGACGCCTCCTAGA
GGCGATGAATACCTTCGGATGCTTCAAACGGTGCTGCACAGGGAGAGCGC
GTGGACACAGTGGAAGCAGGTTGCCAAGTGTCAACAGATCAAAACGGTGC
CCGAGATAGAGGCCAAACAAGCCGCCGATAACGCGGCCGCAGCAGCGGCT
GCAGCGCCTGTTGCCCCAGCGCCAAGCACACGGCCTGCGTTATCCGGCAG
CAAGCGACAGAGACCGAATGCTGCGAAGGCCGCGCAGGAGAGGGCGAAGC
ACGCGCCCCTCGGCAGCGATTTTCCGTTGGAGCAGCTGCAGGTTGCCAAG
TGTCAACAGATCAAAACGGTGCCCGAGATAGAGGCCAAACAAGCCGCCGA
TAACGCGGCCGCAGCAGCGGCTGCAGCGCCTGTTGCCCCAGCGCCAAGCA
CACGGCCTGCGTTATCCGGCAGCAAGCGACAGAGACCGAATGCTGCGAAG
GCCGCGCAGGAGAGGGCGAAGCACGCGCCCCTCGGCAGCGATTTTCCGTT
GGAGCAGCTGGTGAACAACCTTCGCAGCGGTATTCCCAGCTCCAATGAGC
ACCTGGAAGACCAACGCCTGTGTGCAGAGGACCCGGAGGTGAACAACCTT
CGCAGCGGTATTCCCAGCTCCAATGAGCACCTGGAAGACCAACGCCTGTG
TGCAGAGGACCCGGAGACACCAGCATCTGAGCTCCCCAGCGCCAGCCCGT
TGTACAGTTGGCGGGCGCTGCGCTTGCTGGGCATGGATAACCCTGGCAAT
CTAGAGGGTTGCCACGACGGAGACGTCGTTAAGACACCAGCATCTGAGCT
CCCCAGCGCCAGCCCGTTGTACAGTTGGCGGGCGCTGCGCTTGCTGGGCA
TGGATAACCCTGGCAATCTAGAGGGTTGCCACGACGGAGACGTCGTTAAG
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