mRNA_H-paniculata_contig8833.16741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8833.16741.1
Unique NamemRNA_H-paniculata_contig8833.16741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8833.16741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8833contigH-paniculata_contig8833:1105..6268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.5562234-CDS-H-paniculata_contig8833:1104..12961622931107.5562234-CDS-H-paniculata_contig8833:1104..1296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8833 1105..1296 -
1691481593.5567544-CDS-H-paniculata_contig8833:1104..12961691481593.5567544-CDS-H-paniculata_contig8833:1104..1296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8833 1105..1296 -
1622931107.573788-CDS-H-paniculata_contig8833:6145..62681622931107.573788-CDS-H-paniculata_contig8833:6145..6268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8833 6146..6268 -
1691481593.5677226-CDS-H-paniculata_contig8833:6145..62681691481593.5677226-CDS-H-paniculata_contig8833:6145..6268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8833 6146..6268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8833.16741.1prot_H-paniculata_contig8833.16741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8833 1105..6268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8833.16741.1

>prot_H-paniculata_contig8833.16741.1 ID=prot_H-paniculata_contig8833.16741.1|Name=mRNA_H-paniculata_contig8833.16741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
ALYPTVNRTLSSGRWFRKIRLCSSLFTTEQEVGATTDKLAQVIHSISTQV
TAEWSEVLTLTGVAVITQMPPLGTMGLLQGRPWDGDRMLPGAAGAAVGST
EVVAT
back to top

mRNA from alignment at H-paniculata_contig8833:1105..6268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8833.16741.1 ID=mRNA_H-paniculata_contig8833.16741.1|Name=mRNA_H-paniculata_contig8833.16741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5164bp|location=Sequence derived from alignment at H-paniculata_contig8833:1105..6268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTGTATCCAACGGTGAATCGCACGCTTTCGAGTGGGAGATGGTTTAG
GAAAATTAGGCTTTGCTCGTCTCTGTTCACTACGGAACAGGAGGTGGGAG
CGACTACAGACAAGTTGGCACAGGTGCCCCTCATGTTGGTCATACCTTGG
AAAATGCTGCAGCTCCGTTTTATTTTTATTACACAAGTTGATGCCCACCG
GGTTAGTAGTGATCTGTTGCCTGCTACCCCGTGGATGGTATCTAATGGTA
GGTAGAGTAAAGTTCGAGATGTATTGTGATTTCCTATCCATATGTTTACC
GTGTCCACAACTGCCGACGTTAAGACAGCCAGTTAGTAGAGGTAGAGATG
GTCTGCGTTATGGCAGGGTGGCACGGACTTCACTGTACAGTATCCGTTAT
TGTCGATTATCAGCATCCGTTATGTAACGGTTACTGTAGTGTTGAAATCA
ATCACGAGAGCTTCTGAACAGCATACAGAGGTCAATACTGTTGGGCTGCG
TTTAATCGGATTTTGACAAACCATCGTCTCAACAACGCAGCACCCAGCAC
CAATCAGCTTTCAAACGTTGTATCACTTCTTGAAGTTGGTGCGTTATTAC
ACAGTTGGCTGACTGTACGGTAAGATCTGTGGGTACTTGTCAAACCTGAA
CATCTCTATAGATCACGTTGTTTAACAGCCGGGTTATAACGTTTAGCCTT
GAAGCCATTTCGCGCAGGAGGCAGTTTCGGAACAAAAACTGACAACAAAT
GTCTAGTGCTGCACCCGTTCCTAGTCAGAATCATGCCTATTGGCCGTACT
TACTATGTGCACTTCACTATTTGCAGTGGATGATTGTCTTTCTAAACCGA
GGCGACTCCCCATCTCCGTCATCAATCATGTGATATGCATCGTCATTTCC
CCCTGTTTTTGGTACTGGGATTTTTTAAATAGATAAGGACTAGATCGGGA
ACTGACACCTCAAGCGTTAGCATCTCCTAAAATGATTTGCTTGAAATCCA
AGACTTCGCCAGGCACTCTATTTACTATACTCCGAAGAGTACGACCATGG
GAGAGTCTCTCTCCACATTTTTTTTTCAACGATACGACTTTCGATGCTAT
GAGCATAGCAGTTTTCGAGAAATCGAGTTTCAAAATGTTAACGTTATCAT
GGAGGTTTGTAAGTCCCTGAAGATTATGGTATTATCGTACTTGCACAAAA
CAGTATCCTCCGCGTGATTATAGTTAACATTTGGGCACCCCGAGGGGAGG
CATTACGTTTTTTACACTGTGTTGACAGTATAAGCCAACGCTCGCGCGCA
GGCCAACCGTAGGCAAGCTACAGCGGTCACACAGCCCAGAACTCAGCTTA
TGAGCACACTGCAGCAACCGGCAACGATTAAGAACTGGTTCTTTGAACGC
TTACTCCAATGCTGTACTGTAAATCATGGGATTTACGCCGAAGCAGCGAA
CAGATGGCTGGGCAGCATCTGTACACGTAGCCAAGCCATAATTTGCGAGC
ACACTAGTCGCTCAGACACGCGGTCACAGGCTTGCCGTTTCCCACAAATA
ACAGGACATGTTACAGGACTACGGGACCATCACGGAACAGGACGGGACGG
TGGTCCCGTCCCGTCCGGTCCTCACAGGACAAGGTGCCCCGTCCCCAATG
GGCGGGAAAACCTACCCCATCGACCATGCGACGTCATTGAGAAGGAGAAT
GTTCTTATTGTTCCGTGGGAAAGTTCATAGTGCAGCATATCTGTATTTTG
GCTGATGCTCTTGAGCATCTACTGTGAGAGGAAGTTGGGCCTTGTAGTTT
GTTGGTCACATCCTGGCGCGGTGCCACCGTTTTTTGTTTTGTTTTTGTGT
CCACGATGACATATTCAATACATCCAACACGGTCATGACTCTTTTGGAAT
CCATATGTTTGTGCGATTTATCTTGTTTTTTAATGCCATCATCGGCTCTA
TACATTGTTGGACCACAATATATATACCATTCCCAATTTCTTTTTTTTGT
TATTATCCTTGACGACGGCGTTATTAGAGATGCGATGCATAAACAATCGC
GATGGATTCATTGACGCAACTATGATGGGTGCAATCAAACATGATTTTGT
AACAGGTATAATAGAGGATGACAAATCCCGTGCTATTTACTTCCGTCACG
TTCCGTACGCGACAGTGTGGGCAGCATTGTCCCCTAGAAACAAGGTGGGA
TTCTCACGGGATCGTCCCGTCGGTTCTCTGGAGGACACTGTCCCGTCCTG
TGGTCCCGTAACAAACCGTGAAAAATAGTGCCGAATATAGCCCACGTAGG
CCGCGCCTGTGAATAACACTCGTACTTTTTATACGTCATCGGTAGTGATC
ATGCATGTCTGAAAGAGGGGATACGGGTCAACTTGTCCTCCGTCCTCTTC
TTTTTTGAGTTCCAGAATGAGATTTACGGATCCCTGTCGGCACGCTAAAA
TTTATCACGGCGGGTGATACTTGAAACGGGGGGAGATGATATTAGCCATA
TACCCCGATCATAGAATAAAACTTGAATTGAGTGTAGTAATATCACCCCA
TGTCTTCACCTCCCCCCTCAGGGAGATACGATATAACGTGTGTGTAATTT
GTAAATACAGACGAGGTCCCATTTTCAGGCTCATTGAACCGGCTGATACA
TACCGTCCTTTTAGTGGGATCTCGACTCTACCCAACTCCTCGGGCAGGCG
GCAGCGGAGGGTGGTAGCATTCATGCGATGCTGGGTTGTACGACATCGTT
GCGGCATGCAATAGAAGGAGTTATCGCGACCGGGTGGCATCACTTTTTTT
TCATATTGCCAGTATCGCCTTCCTGGGTTGACGAGGGTAAAACTAGGGGA
TAGACCTCGCAGAGTTAAGACCAGTTGTGCCCTTGCCGCTTACCTATTCC
TGGGTACAGCATGCGACACCGATATGTGTGGAGGGAGGTGTGAAGATGAA
CATTTCCAAAACATCTAAAGTTCTCAAGCAGGACATTTGGCCGACATGGT
GAGGGTGCTATGCCGATGCCCCAACGAGAACAGAACGGCAACACCTGGAT
GCACTCCCGGTGATTTTAATAGATTGGAAGAGGAGGAAACTGTTGCAACG
AGTGCATTGTATCGTCGAATCCTACGCCCAAATTTTTTGTTACGCTAGAG
TCGGATGGCGGGCATGCACTGTTGTCTTGTTGCGGGTGATAGTGCATGTT
CATGGGTCCCAAGGACCACTGTGCGTGGATGACGAATTTTGTATCGATTG
GTACGAGGACAGCACGGACTGTATTAGAGAAACCGTTGCTGTACCGCTGT
ACTACTAATGACTTACTTTGTAAATCGGTACCTAAACACAAAAACAGGAC
TTGCACAACGAGATCGACACTCCTGCCACACAGGAAATGGCAGTATTTGA
AATAGCCCAACATCACATATTTTTTTTCTCTTCGCGATCAATGCTGAACT
ATTTATTCACCACGCCGACAACGGTGTCAACAAAGGTCAAGCGGTGGCAC
AACTGTACCCTTCCTAACCCCTAACTACTGTACAACTTAGTCATGGCTCG
CTTGTGATCCATATCCATGGTTAAATGTTCCTATTTTACTTGATTTTTAT
TTTTTAAGATTTTTCATGCAATAAAGATCACGAACTAATGGAATATCATA
GTCGAGGTTCAAGGTACCATAGGTTGTTCCCCTATGGTACCGTAGATTGC
ACAAGATGTACCCTGGACGAAAGCGCGATTTTTTTTTTCGATTTCCTTAA
AAAATGCGACGAACAAGTGACACCCGATAGTTGTTGGCTTTTGAGAAGGC
CTCTCTGGAATTTATCTAAAAAGACGGGTTCATTTGCCAACGTACGGCCT
TCATCGTCGAGGAAGTTGAGCTCGCAAAACGTTAATACCCGGGGTGTTGT
CTTGTAGTCTACGGTAAGGTGCAACGAGACACAGAGCGCATTGCCATGTA
TCACGCAGAGACAGATGTGCTGAACAGTCTTTCCGGCTAGCCAGAGAGGG
GAGGGAGGGACACCAACACGAATGTTAATTCGGGCTCTGCACTGGCATCC
TATATAGTGCAGTACTATTGGTATTGGTAGTATGCTGATATCGGCTAAGA
CAGTTGCCATTGTTATAGTACATTGATGATTCAAATACGTCATCATAAAA
ACACCTAAATATTTGTTGGAAACCCTCCATTGGCCATTTTCCATTGGCTT
TGGGCTAAGTGTATAGCGCCGCACAGCACTGCAGGGGCATGCAGAGGAGG
TTATGCACTTGCCCAGCGCTATTGCGAGTGCTACAAATGTGATGACGGAA
AGTTGTCTGCCGTTATCTTAACATGGAAATATAAAATAGTCGTTCTTGTG
TTGTTTTTACCATTGATTGACGTTCGGTTTCGCCGTCACGCTGACAATAT
AATAGACACTCGATTATGAAGAGATATTCAGCCATAATGCGATTTTTTTC
TGCCTCCTGTGGCGGCTTTGCCGCCCTACTACTCCAGGCCAGTTCATCGA
TATACTGGTTGCTGGCGCAGCCAATATGTGTTGTATTGGCAGAGGCTGCC
AGTATCTAGCCCTTCCAGATAGAAGGATAGAGACAGAAAGCCAGAGACGC
GGTACAACGATGCTAAACATGACCTTTATCTCTTCCGTGCGGGGCTTCGT
CTCTCTGGTGCGGACCATCATCTCGTCCCTGTTGCCTCGGCTTGCCCTCC
AGCCTCGAGGTGCTGTCCTCCATCTCTCCTGATGTCAGTCCAACTCCTCG
GCAGTGGTCTCGCTCAGAGATCCCAACGTTGTTGTGAATTTCGGTCGACC
TGTACACCTGTTAAAACCCACCCTCAACAATTTTTTTCCAACCTTGACAT
TGTTGAAGTTCCCCCAAGCTATAACGCAACTGAATCTAACGCTATTGCTT
GATGTATTTGCTATTTACTTTATAGGCTAATCGTGGGTCGTTTTTTCTTC
ATTCAAACGTTTTACACATCAGGTAATACACTCCATATCGACCCAAGTAA
CAGCGGAATGGTCAGAGGTGCTCACTCTAACGGGGGTGGCGGTGATCACG
CAAATGCCTCCGCTGGGCACAATGGGGCTTCTCCAAGGCCGGCCATGGGA
TGGGGACCGGATGCTGCCTGGGGCGGCGGGGGCAGCGGTTGGCAGCACGG
AGGTGGTGGCTACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8833:1105..6268-

>mRNA_H-paniculata_contig8833.16741.1 ID=mRNA_H-paniculata_contig8833.16741.1|Name=mRNA_H-paniculata_contig8833.16741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig8833:1105..6268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTGTATCCAACGGTGAATCGCACGCTTTCGAGTGGGAGATGGTTTAG
GAAAATTAGGCTTTGCTCGTCTCTGTTCACTACGGAACAGGAGGTGGGAG
CGACTACAGACAAGTTGGCACAGGCTCTGTATCCAACGGTGAATCGCACG
CTTTCGAGTGGGAGATGGTTTAGGAAAATTAGGCTTTGCTCGTCTCTGTT
CACTACGGAACAGGAGGTGGGAGCGACTACAGACAAGTTGGCACAGGTAA
TACACTCCATATCGACCCAAGTAACAGCGGAATGGTCAGAGGTGCTCACT
CTAACGGGGGTGGCGGTGATCACGCAAATGCCTCCGCTGGGCACAATGGG
GCTTCTCCAAGGCCGGCCATGGGATGGGGACCGGATGCTGCCTGGGGCGG
CGGGGGCAGCGGTTGGCAGCACGGAGGTGGTGGCTACGGTAATACACTCC
ATATCGACCCAAGTAACAGCGGAATGGTCAGAGGTGCTCACTCTAACGGG
GGTGGCGGTGATCACGCAAATGCCTCCGCTGGGCACAATGGGGCTTCTCC
AAGGCCGGCCATGGGATGGGGACCGGATGCTGCCTGGGGCGGCGGGGGCA
GCGGTTGGCAGCACGGAGGTGGTGGCTACG
back to top