mRNA_H-paniculata_contig8812.16727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8812.16727.1
Unique NamemRNA_H-paniculata_contig8812.16727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.900e-50
Identity = 78/103 (75.73%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            MEYA+IEASGRQFWVE KKF E NRLLINIGST+++QRILF+NKT +I IGQP L ++L++G+ISKHFLG KILVFKMKPK KYRRKIGH Q LT+LF+NQI+
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNKTGAINIGQPYLPNTLIKGIISKHFLGPKILVFKMKPKKKYRRKIGHRQKLTRLFINQIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 146 bits (369), Expect = 9.700e-44
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            MEYAIIEASGRQFWVE KKF E NRL++ IGSTILI+R+LF+ +  +  IGQP L++ +V+GV+SKHFLG KILVFKMKPK KYR+KIGH Q LT+L +N+I+
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQPYLNNVVVKGVVSKHFLGPKILVFKMKPKKKYRKKIGHRQKLTRLLINKIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.780e-43
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQI 306
            MEYAIIEASGRQFWVE KKF E N L+I IGSTILI+R+LF     +  IGQP L+D +V+G+ISKHFLG K+LVFKMKPK KYR+KIGH Q LT+L +NQI
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNETNTFIGQPYLNDVVVKGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQI 102
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.240e-42
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            MEYAIIEASGRQFWVE KKF E NRL + +GSTI+I+R+LF+ K     IGQP L + L+ G+ISKHFLG K+LVFKMKPK KYR+KIGH Q LT+L +NQI+
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKADTFIGQPYLKNILLTGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.420e-42
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            MEYAIIEASGRQFWVE  KF ELNRL + IGSTILI+RILF+ K  +  IGQP L++ +++G+ISKHFLGSKILVFKMKPK KYR+K+GH Q LT+L ++ I+
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKKTNTFIGQPYLTNIVLKGIISKHFLGSKILVFKMKPKKKYRKKMGHRQKLTRLLISSIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 6.540e-42
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQI 306
            MEYAIIEASGRQFWVE KKF E NRL++ IGST+LI+R+LF+ K  +  IG+P L   +++G+ISKHFLG KI+VFKMKPK KYR+KIGH Q LT+L +N+I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGRPYLEGIVLKGIISKHFLGPKIIVFKMKPKKKYRKKIGHRQKLTRLLINKI 102
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.280e-42
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            MEYAIIEASGRQFWVE KKF E NRL++ IGSTILI+RILF     +  IGQP L + LV+G ISKHFLG KILVFKMKPK KYR+KIGH Q +T+L +++I+
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNKTTTHIGQPYLKNILVKGKISKHFLGPKILVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A8E5BG87_9PHAE (Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BG87_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.790e-39
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            M+YAI+EASGRQFWVE  KFFELNRL   +GST++ +R+LF+NK     IGQP L + +V+G+I+KHFLG KIL+FKMKPK KYR+K+GH Q LT++ +N I+
Sbjct:    1 MKYAILEASGRQFWVEPTKFFELNRLSRKVGSTLIFKRVLFLNKKGVCLIGQPYLMNQVVKGIITKHFLGIKILIFKMKPKKKYRKKLGHRQKLTRVLINIIE 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A8E5XRL0_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL0_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.700e-39
Identity = 64/103 (62.14%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKIGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQIQ 309
            M+YAIIEASGRQFWVE +KF ELNRL +NIG+ ILI+R+LF    +  +IGQP ++   ++GV+SKHFLG K+LVFKMKPK KYR++IGH Q LT+L ++QI+
Sbjct:    1 MKYAIIEASGRQFWVEPEKFVELNRLPVNIGTKILIKRVLFAKTGEKTRIGQPYINHIEIKGVVSKHFLGPKLLVFKMKPKKKYRKRIGHRQKLTRLLISQIK 103
[Close]
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Match: A0A2I4Q2A5_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A5_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 9.980e-39
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKT-------------DSIK-----IGQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVNQI 306
            MEYAIIEASGRQFW+E KKF E NRLL++IGSTI+++RILF+ KT               IK     +GQP +++  ++G+ISKHFLG KILVFKMKPK KYR+K GH Q LT+LF+++I
Sbjct:    1 MEYAIIEASGRQFWIEPKKFVEFNRLLLHIGSTIILKRILFVKKTIVKDVEVPSTSLIKRIKKTTTFVGQPYITNIFIKGIISKHFLGPKILVFKMKPKKKYRKKFGHRQKLTRLFISEI 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8812.16727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JYD6_9PHAE1.900e-5075.73Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A0R6M4T4_UNDPI9.700e-4467.9650S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A8F0F7S8_9PHAE2.780e-4369.61Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A2R4QQ35_9PHAE1.240e-4266.9950S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSP2_9PHAE2.420e-4267.9650S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A8F0JZ48_9PHAE6.540e-4265.69Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
A0A1I9LVJ3_9PHAE9.280e-4267.9650S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A8E5BG87_9PHAE1.790e-3961.17Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A8E5XRL0_9PHAE2.700e-3962.1450S ribosomal protein L21, chloroplastic n=1 Tax=I... [more]
A0A2I4Q2A5_9PHAE9.980e-3957.5050S ribosomal protein L21, chloroplastic n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8812contigH-paniculata_contig8812:2901..3212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.1774495-CDS-H-paniculata_contig8812:2900..32121622931105.1774495-CDS-H-paniculata_contig8812:2900..3212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8812 2901..3212 -
1691481592.5265293-CDS-H-paniculata_contig8812:2900..32121691481592.5265293-CDS-H-paniculata_contig8812:2900..3212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8812 2901..3212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8812.16727.1prot_H-paniculata_contig8812.16727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8812 2901..3212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8812.16727.1

>prot_H-paniculata_contig8812.16727.1 ID=prot_H-paniculata_contig8812.16727.1|Name=mRNA_H-paniculata_contig8812.16727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MEYAIIEASGRQFWVERKKFFELNRLLINIGSTILIQRILFINKTDSIKI
GQPCLSDSLVEGVISKHFLGSKILVFKMKPKNKYRRKIGHGQNLTKLFVN
QIQ*
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mRNA from alignment at H-paniculata_contig8812:2901..3212-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8812.16727.1 ID=mRNA_H-paniculata_contig8812.16727.1|Name=mRNA_H-paniculata_contig8812.16727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig8812:2901..3212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATACGCAATTATTGAAGCAAGTGGTCGACAATTTTGGGTTGAACG
TAAGAAATTTTTTGAGCTTAATCGTCTACTTATTAATATTGGAAGTACTA
TTCTAATCCAGCGAATCTTATTTATCAATAAGACGGATTCGATTAAAATT
GGTCAACCTTGTTTATCAGATTCGTTAGTTGAAGGAGTAATAAGCAAACA
TTTTTTGGGATCTAAAATTCTCGTTTTTAAAATGAAACCTAAAAACAAAT
ATCGTAGAAAGATTGGACATGGACAAAATTTGACTAAATTATTTGTCAAT
CAAATTCAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8812:2901..3212-

>mRNA_H-paniculata_contig8812.16727.1 ID=mRNA_H-paniculata_contig8812.16727.1|Name=mRNA_H-paniculata_contig8812.16727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig8812:2901..3212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATACGCAATTATTGAAGCAAGTGGTCGACAATTTTGGGTTGAACG
TAAGAAATTTTTTGAGCTTAATCGTCTACTTATTAATATTGGAAGTACTA
TTCTAATCCAGCGAATCTTATTTATCAATAAGACGGATTCGATTAAAATT
GGTCAACCTTGTTTATCAGATTCGTTAGTTGAAGGAGTAATAAGCAAACA
TTTTTTGGGATCTAAAATTCTCGTTTTTAAAATGAAACCTAAAAACAAAT
ATCGTAGAAAGATTGGACATGGACAAAATTTGACTAAATTATTTGTCAAT
CAAATTCAATAAATGGAATACGCAATTATTGAAGCAAGTGGTCGACAATT
TTGGGTTGAACGTAAGAAATTTTTTGAGCTTAATCGTCTACTTATTAATA
TTGGAAGTACTATTCTAATCCAGCGAATCTTATTTATCAATAAGACGGAT
TCGATTAAAATTGGTCAACCTTGTTTATCAGATTCGTTAGTTGAAGGAGT
AATAAGCAAACATTTTTTGGGATCTAAAATTCTCGTTTTTAAAATGAAAC
CTAAAAACAAATATCGTAGAAAGATTGGACATGGACAAAATTTGACTAAA
TTATTTGTCAATCAAATTCAATAA
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