mRNA_H-paniculata_contig880.16712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI) HSP 1 Score: 310 bits (793), Expect = 1.310e-96 Identity = 163/245 (66.53%), Postives = 187/245 (76.33%), Query Frame = 2
Query: 305 QGSAETGGSGAADAAVPVGPK---SEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTS------KFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
+G G S + A P+G + +EA+ AM Q IGP HG C+L +VNVTATA++ CT+DL+ VVMRARNAEYNPKRFSAC+IRLI+K EPKATALVFKTGKVVVTG+RSN +VDYAC FA IL KL N + F LE DRRV NMVATTD+GFPIRLEGLVAS G CNYEPELFPGLIYR+ PKIC LIFVSGKVVLTG K+A+ LE FK +YP LC FKKATVL+Q+SAT
Sbjct: 87 RGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSAT 331
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD) HSP 1 Score: 212 bits (539), Expect = 9.380e-61 Identity = 109/194 (56.19%), Postives = 141/194 (72.68%), Query Frame = 2
Query: 431 ELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
E+++ NV AT N+ C LDL+ + MRARNAEYNPKRF+A ++R+ R+PK TAL+F TGKVV+TGARS A K+A I+ KLG + KF AD +HN+VA+ D+ FPIRLE L A AH + +YEPELFPGL+YR+ +PK+ LLIFVSGKVV+TG K+ +DL AF+ +YPVLC F+KA S AT
Sbjct: 40 EVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRI---RDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGYEDVKF---ADFGLHNLVASADVRFPIRLEAL-AHAHSNYAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKADSRPVSQAT 226
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: M1UPT6_CYAM1 (TATA-box binding protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UPT6_CYAM1) HSP 1 Score: 202 bits (515), Expect = 5.350e-57 Identity = 104/194 (53.61%), Postives = 139/194 (71.65%), Query Frame = 2
Query: 431 ELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
E+R+ NV A+ N+ C LDL+ + MRARNAEYNP+RF+A ++R+ R+P+ TAL+F +GKVV+TGARS A K+A I+ KLG K AD +HN+VA+ D+ FPIRLE L A AH + +YEPELFPGL+YR+ +P++ LLIFVSGKVV+TG K+ +DL AF+ +YPVLC F+KA S AT
Sbjct: 42 EVRLQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRI---RDPRTTALIFSSGKVVITGARSEEDARLAARKYAKIVRKLGYADVKL---ADFELHNLVASADVRFPIRLEAL-AHAHSNYAHYEPELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDLNEAFQRLYPVLCQFRKADSRAVSRAT 228
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S0ZL16_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL16_9RHOD) HSP 1 Score: 199 bits (507), Expect = 2.040e-56 Identity = 102/184 (55.43%), Postives = 136/184 (73.91%), Query Frame = 2
Query: 437 RIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKAT 988
+I NV +T N+G +LDL+ + +RARNAEYNPKRF+A ++R+ REPK TAL+F +GK+VVTGA+S + A K+A I+ KLG + +KF+ + +V N+VA+ D+ FP+RLE L A AH C+YEPELFPGLIYR+ PK+ LLIFVSGKVVLTG K +++ AF IYPVLC F+K T
Sbjct: 41 QIQNVVSTTNLGVSLDLKEIALRARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKIVVTGAKSIDSAKLASRKYARIVQKLGYEAAKFS---EFKVQNIVASCDVTFPVRLEPL-AQAHSHFCSYEPELFPGLIYRMLDPKVVLLIFVSGKVVLTGAKVRDEIYDAFNNIYPVLCLFRKPT 217
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S0XI96_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XI96_9RHOD) HSP 1 Score: 197 bits (501), Expect = 1.420e-55 Identity = 100/183 (54.64%), Postives = 135/183 (73.77%), Query Frame = 2
Query: 440 IVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKAT 988
I NV +T N+ LDL+ + +RARNAEYNPKRF+A ++R+ R+PK TAL+F +GK+VVTGA+ A +A K+A I+ KLG +++KF+ + +V N+VA+ D+ FP+RLE L A AH C+YEPELFPGLIYR+ PK+ LL+FVSGKVVLTG K +++ AFK IYPVLC F+K T
Sbjct: 40 IQNVVSTTNLSVNLDLKEIALRARNAEYNPKRFAAVIMRI---RDPKTTALIFSSGKIVVTGAKGIDAARFASRKYARIVQKLGYESAKFS---EFKVQNIVASCDVQFPVRLEPL-AHAHSNFCSYEPELFPGLIYRMINPKVVLLVFVSGKVVLTGAKVKQEIYDAFKNIYPVLCLFQKRT 215
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A2V3IRU9_9FLOR (TATA-box-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRU9_9FLOR) HSP 1 Score: 197 bits (501), Expect = 3.380e-55 Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 2
Query: 440 IVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKA 985
I NV AT N+ LDL+++ +RARNAEYNPKRF+A ++R+ REPK TAL+F +GK+VVTGA+S R A K+A I+ KLG D +KF + V N+VA+ D+ FP+RLEGL A AH + C+YEPELFPGLIYR+ +PKI LLIFVSGKVVLTG K D+ AF IY VL +F+KA
Sbjct: 67 IQNVVATTNLDVKLDLKKIALRARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKIVVTGAKSERESSRASRKYAKIVHKLGYDDAKFK---EFTVQNIVASCDVNFPVRLEGL-AHAHSQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRADIYEAFDNIYHVLQTFRKA 241
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A507CSA2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CSA2_9FUNG) HSP 1 Score: 196 bits (499), Expect = 5.820e-55 Identity = 105/210 (50.00%), Postives = 140/210 (66.67%), Query Frame = 2
Query: 353 PVGPKSEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
P G + + +P ++ + G + N+ AT N+ LDL+ + + ARNAEYNPKRF+A ++R+ R+PK TAL+F +GK+VVTGA+S YA K+A I+ KLG +KFT + ++ N+V + D+ FPIRLEGL A+AH NYEPELFPGLIYR+ PKI LLIFVSGKVVLTG KT E + AF+ IYPVL F+K
Sbjct: 36 PAGVQQQIPPQAQPGQLQQYIHTSGIVPILQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRI---RDPKTTALIFASGKMVVTGAKSEEQSRYAARKYARIIQKLGFQAAKFT---EFKIQNIVGSCDVKFPIRLEGL-ANAHSTFANYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKTREQIYDAFEKIYPVLTGFRK 238
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S3T7H9_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T7H9_EMIHU) HSP 1 Score: 195 bits (495), Expect = 9.820e-55 Identity = 105/191 (54.97%), Postives = 135/191 (70.68%), Query Frame = 2
Query: 446 NVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSATRP 1018
N+ AT N+G LDL+ + M ARNAEYNPKRFSA ++R+ R+PK TAL+FK+GK+VVTGA+S A KFA I+ KL + ++FT D ++ NMV + D+ FPIRLEGL A H + +YEPELFPGLIYR+ QPKI LLIFVSGKVVLTGGK ++ +AF+ IYPVL F+K ++A P
Sbjct: 29 NIVATCNLGIALDLKTIAMHARNAEYNPKRFSAVIMRI---RDPKTTALIFKSGKMVVTGAKSEEQARQAARKFARIVQKL-DFPARFT---DFKIQNMVGSCDVKFPIRLEGL-AYKHSHYSSYEPELFPGLIYRMVQPKIVLLIFVSGKVVLTGGKVRNEIFSAFEQIYPVLQEFRKLPAAAAATALTP 211
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: TBP_ACACA (TATA-box-binding protein n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=TBP_ACACA) HSP 1 Score: 196 bits (499), Expect = 1.040e-54 Identity = 106/205 (51.71%), Postives = 140/205 (68.29%), Query Frame = 2
Query: 368 SEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
S+ ++ P I P L+ N+ +T N+GC LDL+ + + ARNAEYNPKRF+A ++R+ REPK TAL+F +GK+V TGA+S A A K+A I+ KLG +KF D ++ N+V + D+ FPIRLEGL A AH +C+YEPELFPGLIYR+ QPKI LLIFVSGK+VLTG K E++ AF+ IYPVL +KK
Sbjct: 70 SDVDRTKHPSGIVPTLQ---------NIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVCTGAKSEEASRLAARKYARIIQKLGF-AAKFL---DFKIQNIVGSCDVRFPIRLEGL-AFAHNHYCSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTEYKK 257
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A1J5WKV9_9MICR (TATA-binding protein (TBP) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WKV9_9MICR) HSP 1 Score: 196 bits (498), Expect = 1.140e-54 Identity = 104/207 (50.24%), Postives = 146/207 (70.53%), Query Frame = 2
Query: 362 PKSEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
P ++ ++++ P + P+++ N+ AT N+ C LDL+ + M+ARNAEYNPKRF+A ++R+ REPK TAL+F +GK+VVTGA+S A K+A I+ KLG +KF + ++ N+VA+ D+ FPIRLEGL A H + C+YEPELFPGLIYR+ QPKI LL+FVSGK+VLTG K E++ TAF+AIYPVL ++ K
Sbjct: 59 PLADVDRSIHPSGLVPIIQ---------NIVATVNMDCRLDLKTIAMQARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKMVVTGAKSEEMSRLASRKYARIVHKLGFP-AKFL---EFKIQNIVASCDVRFPIRLEGL-ALGHSQFCSYEPELFPGLIYRMVQPKIVLLVFVSGKIVLTGAKLREEIYTAFEAIYPVLKAYSK 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig880.16712.1 >prot_H-paniculata_contig880.16712.1 ID=prot_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp MSRQGSAETGGSGAADAAVPVGPKSEAEKAMEPQKIGPLLEHGGCELRIVback to top mRNA from alignment at H-paniculata_contig880:27272..30717- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig880.16712.1 ID=mRNA_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-paniculata_contig880:27272..30717- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig880:27272..30717- >mRNA_H-paniculata_contig880.16712.1 ID=mRNA_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig880:27272..30717- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |