mRNA_H-paniculata_contig880.16712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig880.16712.1
Unique NamemRNA_H-paniculata_contig880.16712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 1.310e-96
Identity = 163/245 (66.53%), Postives = 187/245 (76.33%), Query Frame = 2
Query:  305 QGSAETGGSGAADAAVPVGPK---SEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTS------KFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
            +G    G S  +  A P+G +   +EA+ AM  Q IGP   HG C+L +VNVTATA++ CT+DL+ VVMRARNAEYNPKRFSAC+IRLI+K EPKATALVFKTGKVVVTG+RSN +VDYAC  FA IL KL N +        F LE DRRV NMVATTD+GFPIRLEGLVAS  G  CNYEPELFPGLIYR+  PKIC LIFVSGKVVLTG K+A+ LE  FK +YP LC FKKATVL+Q+SAT
Sbjct:   87 RGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSAT 331          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD)

HSP 1 Score: 212 bits (539), Expect = 9.380e-61
Identity = 109/194 (56.19%), Postives = 141/194 (72.68%), Query Frame = 2
Query:  431 ELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
            E+++ NV AT N+ C LDL+ + MRARNAEYNPKRF+A ++R+   R+PK TAL+F TGKVV+TGARS      A  K+A I+ KLG +  KF   AD  +HN+VA+ D+ FPIRLE L A AH  + +YEPELFPGL+YR+ +PK+ LLIFVSGKVV+TG K+ +DL  AF+ +YPVLC F+KA     S AT
Sbjct:   40 EVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRI---RDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGYEDVKF---ADFGLHNLVASADVRFPIRLEAL-AHAHSNYAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKADSRPVSQAT 226          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: M1UPT6_CYAM1 (TATA-box binding protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UPT6_CYAM1)

HSP 1 Score: 202 bits (515), Expect = 5.350e-57
Identity = 104/194 (53.61%), Postives = 139/194 (71.65%), Query Frame = 2
Query:  431 ELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSAT 1012
            E+R+ NV A+ N+ C LDL+ + MRARNAEYNP+RF+A ++R+   R+P+ TAL+F +GKVV+TGARS      A  K+A I+ KLG    K    AD  +HN+VA+ D+ FPIRLE L A AH  + +YEPELFPGL+YR+ +P++ LLIFVSGKVV+TG K+ +DL  AF+ +YPVLC F+KA     S AT
Sbjct:   42 EVRLQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRI---RDPRTTALIFSSGKVVITGARSEEDARLAARKYAKIVRKLGYADVKL---ADFELHNLVASADVRFPIRLEAL-AHAHSNYAHYEPELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDLNEAFQRLYPVLCQFRKADSRAVSRAT 228          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S0ZL16_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL16_9RHOD)

HSP 1 Score: 199 bits (507), Expect = 2.040e-56
Identity = 102/184 (55.43%), Postives = 136/184 (73.91%), Query Frame = 2
Query:  437 RIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKAT 988
            +I NV +T N+G +LDL+ + +RARNAEYNPKRF+A ++R+   REPK TAL+F +GK+VVTGA+S  +   A  K+A I+ KLG + +KF+   + +V N+VA+ D+ FP+RLE L A AH   C+YEPELFPGLIYR+  PK+ LLIFVSGKVVLTG K  +++  AF  IYPVLC F+K T
Sbjct:   41 QIQNVVSTTNLGVSLDLKEIALRARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKIVVTGAKSIDSAKLASRKYARIVQKLGYEAAKFS---EFKVQNIVASCDVTFPVRLEPL-AQAHSHFCSYEPELFPGLIYRMLDPKVVLLIFVSGKVVLTGAKVRDEIYDAFNNIYPVLCLFRKPT 217          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S0XI96_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XI96_9RHOD)

HSP 1 Score: 197 bits (501), Expect = 1.420e-55
Identity = 100/183 (54.64%), Postives = 135/183 (73.77%), Query Frame = 2
Query:  440 IVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKAT 988
            I NV +T N+   LDL+ + +RARNAEYNPKRF+A ++R+   R+PK TAL+F +GK+VVTGA+   A  +A  K+A I+ KLG +++KF+   + +V N+VA+ D+ FP+RLE L A AH   C+YEPELFPGLIYR+  PK+ LL+FVSGKVVLTG K  +++  AFK IYPVLC F+K T
Sbjct:   40 IQNVVSTTNLSVNLDLKEIALRARNAEYNPKRFAAVIMRI---RDPKTTALIFSSGKIVVTGAKGIDAARFASRKYARIVQKLGYESAKFS---EFKVQNIVASCDVQFPVRLEPL-AHAHSNFCSYEPELFPGLIYRMINPKVVLLVFVSGKVVLTGAKVKQEIYDAFKNIYPVLCLFQKRT 215          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A2V3IRU9_9FLOR (TATA-box-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRU9_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 3.380e-55
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 2
Query:  440 IVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKA 985
            I NV AT N+   LDL+++ +RARNAEYNPKRF+A ++R+   REPK TAL+F +GK+VVTGA+S R    A  K+A I+ KLG D +KF    +  V N+VA+ D+ FP+RLEGL A AH + C+YEPELFPGLIYR+ +PKI LLIFVSGKVVLTG K   D+  AF  IY VL +F+KA
Sbjct:   67 IQNVVATTNLDVKLDLKKIALRARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKIVVTGAKSERESSRASRKYAKIVHKLGYDDAKFK---EFTVQNIVASCDVNFPVRLEGL-AHAHSQFCSYEPELFPGLIYRMIKPKIVLLIFVSGKVVLTGAKVRADIYEAFDNIYHVLQTFRKA 241          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A507CSA2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CSA2_9FUNG)

HSP 1 Score: 196 bits (499), Expect = 5.820e-55
Identity = 105/210 (50.00%), Postives = 140/210 (66.67%), Query Frame = 2
Query:  353 PVGPKSEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
            P G + +     +P ++   +   G    + N+ AT N+   LDL+ + + ARNAEYNPKRF+A ++R+   R+PK TAL+F +GK+VVTGA+S     YA  K+A I+ KLG   +KFT   + ++ N+V + D+ FPIRLEGL A+AH    NYEPELFPGLIYR+  PKI LLIFVSGKVVLTG KT E +  AF+ IYPVL  F+K
Sbjct:   36 PAGVQQQIPPQAQPGQLQQYIHTSGIVPILQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRI---RDPKTTALIFASGKMVVTGAKSEEQSRYAARKYARIIQKLGFQAAKFT---EFKIQNIVGSCDVKFPIRLEGL-ANAHSTFANYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKTREQIYDAFEKIYPVLTGFRK 238          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A7S3T7H9_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T7H9_EMIHU)

HSP 1 Score: 195 bits (495), Expect = 9.820e-55
Identity = 105/191 (54.97%), Postives = 135/191 (70.68%), Query Frame = 2
Query:  446 NVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSATRP 1018
            N+ AT N+G  LDL+ + M ARNAEYNPKRFSA ++R+   R+PK TAL+FK+GK+VVTGA+S      A  KFA I+ KL +  ++FT   D ++ NMV + D+ FPIRLEGL A  H  + +YEPELFPGLIYR+ QPKI LLIFVSGKVVLTGGK   ++ +AF+ IYPVL  F+K      ++A  P
Sbjct:   29 NIVATCNLGIALDLKTIAMHARNAEYNPKRFSAVIMRI---RDPKTTALIFKSGKMVVTGAKSEEQARQAARKFARIVQKL-DFPARFT---DFKIQNMVGSCDVKFPIRLEGL-AYKHSHYSSYEPELFPGLIYRMVQPKIVLLIFVSGKVVLTGGKVRNEIFSAFEQIYPVLQEFRKLPAAAAATALTP 211          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: TBP_ACACA (TATA-box-binding protein n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=TBP_ACACA)

HSP 1 Score: 196 bits (499), Expect = 1.040e-54
Identity = 106/205 (51.71%), Postives = 140/205 (68.29%), Query Frame = 2
Query:  368 SEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
            S+ ++   P  I P L+         N+ +T N+GC LDL+ + + ARNAEYNPKRF+A ++R+   REPK TAL+F +GK+V TGA+S  A   A  K+A I+ KLG   +KF    D ++ N+V + D+ FPIRLEGL A AH  +C+YEPELFPGLIYR+ QPKI LLIFVSGK+VLTG K  E++  AF+ IYPVL  +KK
Sbjct:   70 SDVDRTKHPSGIVPTLQ---------NIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVCTGAKSEEASRLAARKYARIIQKLGF-AAKFL---DFKIQNIVGSCDVRFPIRLEGL-AFAHNHYCSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTEYKK 257          
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Match: A0A1J5WKV9_9MICR (TATA-binding protein (TBP) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WKV9_9MICR)

HSP 1 Score: 196 bits (498), Expect = 1.140e-54
Identity = 104/207 (50.24%), Postives = 146/207 (70.53%), Query Frame = 2
Query:  362 PKSEAEKAMEPQKIGPLLEHGGCELRIVNVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALVFKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMVATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSGKVVLTGGKTAEDLETAFKAIYPVLCSFKK 982
            P ++ ++++ P  + P+++         N+ AT N+ C LDL+ + M+ARNAEYNPKRF+A ++R+   REPK TAL+F +GK+VVTGA+S      A  K+A I+ KLG   +KF    + ++ N+VA+ D+ FPIRLEGL A  H + C+YEPELFPGLIYR+ QPKI LL+FVSGK+VLTG K  E++ TAF+AIYPVL ++ K
Sbjct:   59 PLADVDRSIHPSGLVPIIQ---------NIVATVNMDCRLDLKTIAMQARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKMVVTGAKSEEMSRLASRKYARIVHKLGFP-AKFL---EFKIQNIVASCDVRFPIRLEGL-ALGHSQFCSYEPELFPGLIYRMVQPKIVLLVFVSGKIVLTGAKLREEIYTAFEAIYPVLKAYSK 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig880.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI1.310e-9666.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J7ISE2_9RHOD9.380e-6156.19Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1UPT6_CYAM15.350e-5753.61TATA-box binding protein n=2 Tax=cellular organism... [more]
A0A7S0ZL16_9RHOD2.040e-5655.43Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S0XI96_9RHOD1.420e-5554.64Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A2V3IRU9_9FLOR3.380e-5557.69TATA-box-binding protein n=1 Tax=Gracilariopsis ch... [more]
A0A507CSA2_9FUNG5.820e-5550.00Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A7S3T7H9_EMIHU9.820e-5554.97Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
TBP_ACACA1.040e-5451.71TATA-box-binding protein n=2 Tax=Acanthamoeba cast... [more]
A0A1J5WKV9_9MICR1.140e-5450.24TATA-binding protein (TBP) n=1 Tax=Amphiamblys sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig880contigH-paniculata_contig880:27272..30717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1.1e-82
Seed eggNOG ortholog2880.D7FV81
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Ec32 ortholog descriptionBeta2-adaptin/TBP, C-terminal domain
Ec32 orthologEc-14_000120.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Exons4
Model size1928
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig880.16712.1prot_H-paniculata_contig880.16712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig880 28161..30422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.2013478-UTR-H-paniculata_contig880:27271..281601622931103.2013478-UTR-H-paniculata_contig880:27271..28160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig880 27272..28160 -
1691481591.565695-UTR-H-paniculata_contig880:27271..281601691481591.565695-UTR-H-paniculata_contig880:27271..28160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig880 27272..28160 -
1622931103.282877-UTR-H-paniculata_contig880:30422..307171622931103.282877-UTR-H-paniculata_contig880:30422..30717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig880 30423..30717 -
1691481591.6210093-UTR-H-paniculata_contig880:30422..307171691481591.6210093-UTR-H-paniculata_contig880:30422..30717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig880 30423..30717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.2172034-CDS-H-paniculata_contig880:28160..283011622931103.2172034-CDS-H-paniculata_contig880:28160..28301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 28161..28301 -
1691481591.5832229-CDS-H-paniculata_contig880:28160..283011691481591.5832229-CDS-H-paniculata_contig880:28160..28301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 28161..28301 -
1622931103.2289808-CDS-H-paniculata_contig880:28672..288591622931103.2289808-CDS-H-paniculata_contig880:28672..28859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 28673..28859 -
1691481591.5924811-CDS-H-paniculata_contig880:28672..288591691481591.5924811-CDS-H-paniculata_contig880:28672..28859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 28673..28859 -
1622931103.247474-CDS-H-paniculata_contig880:29552..297161622931103.247474-CDS-H-paniculata_contig880:29552..29716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 29553..29716 -
1691481591.602772-CDS-H-paniculata_contig880:29552..297161691481591.602772-CDS-H-paniculata_contig880:29552..29716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 29553..29716 -
1622931103.2643557-CDS-H-paniculata_contig880:30170..304221622931103.2643557-CDS-H-paniculata_contig880:30170..30422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 30171..30422 -
1691481591.6115744-CDS-H-paniculata_contig880:30170..304221691481591.6115744-CDS-H-paniculata_contig880:30170..30422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig880 30171..30422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig880.16712.1

>prot_H-paniculata_contig880.16712.1 ID=prot_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MSRQGSAETGGSGAADAAVPVGPKSEAEKAMEPQKIGPLLEHGGCELRIV
NVTATANVGCTLDLQRVVMRARNAEYNPKRFSACVIRLIDKREPKATALV
FKTGKVVVTGARSNRAVDYACSKFAAILGKLGNDTSKFTLEADRRVHNMV
ATTDLGFPIRLEGLVASAHGEHCNYEPELFPGLIYRLAQPKICLLIFVSG
KVVLTGGKTAEDLETAFKAIYPVLCSFKKATVLMQSSATRPHKRAKI*
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mRNA from alignment at H-paniculata_contig880:27272..30717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig880.16712.1 ID=mRNA_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-paniculata_contig880:27272..30717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATAGATAACGACGCTGTCAAGTGCCAGCAGAGGTACTGCACATCACG CACCACTCGCCGCAGAGATTCAACTCTGCCAGAGACGCCCTATCTACTGG TGTTCGTCGGCGTCGCCTGGAGTGGTACGCCCTGCCGGGGCAGGGGAAAG GCAGCAGAAGCCAACAGCCTGCTTAGTTGTTGCCTTGGGGTTGCTTAGTA CAGAGCAAAACGTTGGCGACAGCTCCTCGCGTGCCTGAGACCTCGCACAA TCGATACTCGATAGCCTTGCAGCTGTGCTGTGCTTCTCTGTCATCATGTC TCGTCAGGGCTCTGCGGAGACGGGCGGCTCAGGTGCAGCAGACGCAGCGG TCCCAGTAGGGCCCAAGTCGGAGGCAGAAAAAGCGATGGAGCCACAGAAG ATTGGGCCATTACTTGAACATGGCGGATGCGAGCTCCGCATCGTCAACGT GACAGCTACCGCGAACGTGGGCTGCACGCTGGACCTGCAGCGCGTAGTGA TGCGCGCTCGTAACGCGGAGTATAACCCCAAGCGCTTCTCTGCCTGTGTG AGTCTTGTAAACTTGTTTTCTCTGTCGTCGTATGCTGGTGTGCTGTATCT GATGGGTGTGCTATTTTACAGTCTGTACATTGGGCCCGCAGCAGGCCCTG GATGAATGTGTGTCAACTTGATCGACGAGCCTTGCTGACAATCAACATTG GAACCGGTTCTATATATCGTTGTAGCAACGATCGTAGATCCACCACAGTC AACGCGTGATCATCTACCATTATGACCACAGTTGTTCGATGCGGTGTATT GACTATACTGACTGTAGTACTCTGCGGGTGTTGGTAACCCAGCGGCATTT GCGCCTTTGTCTACGTTCACAAATATAGCCTGTACATAGCATGTGGGGAT GAATTGCCAGGCATTGATCATGCGAGGAGAACTGTCTGGAGCACACGACC ACATGCTCTTGTGACCTCCACCTTTCGAATACACTATTTAAACCGACACA GGTTATTCGATTGATCGACAAGAGAGAGCCCAAGGCAACTGCGCTAGTTT TCAAGACGGGCAAGGTGGTGGTTACCGGAGCCCGCAGCAACAGGGCTGTG GACTACGCTTGCTCAAAATTTGCTGCTATTCTGGGCAAACTTGGCAACGA TACCAGCAAGTTCACGTGAGCGTCCAACATTACCTGCCGTACACAACTGT AGTTTCTCCTTTTGTCGAACAACTGAAGTTACATTGATAGTACAGCTACA GCTGCGTTAACCCGCACAGCCCGTGCCTTGTCCTTACCACACGCAAAATG ATTCACTGCGCTCACAGGCATCCCCACAGGCATCCATCATTTGGAAGAAG ATGCCTTCTTTAGAAGCTACTTGAGTGCAGTAGAGACTAAAGAATTGACA TCAAAACTGTTCCGAGATGATCATGCCTAATCGATAGTATTCTATATATA TATCAGCAATAGGGTTGAGAGGGAGAGACGGAATCGCGAACAAGCGTGAG GCATTCAGTCGTTGTAGGGTTGATTTGGTCAACAGCTCTACATTACTGTA CAGCAGAGCTACAATACGCCTGCAGCAGGCAAGTTCCCTTGCGTGATTGT CGGCACCACTCCCTTGCCGTGCTTCCCAAAGGCCGTGCAACTAACGAGCT ATGCTCGAGAGAACAAATTGCGCAAAGTCGACTGAGTAGGGGCTCTGTAC CCCCCGTCACATGCTATGAAGACCAAAGTCTTAAATATATTATTGATAAG CCTCACTTGACGTTCGGTTGCACTGTGGTTTTGATAAGCGTCCATTCACT ATCATAATTCCATCCCCTTATGAAACCGTCTGCTGCCCACTCCCCTGCCG TTGGATAGTCTGGAGGCTGATCGGCGGGTGCACAATATGGTTGCCACAAC GGATTTAGGATTTCCCATACGCCTGGAAGGTCTAGTGGCCTCGGCGCACG GCGAGCACTGTAACTACGAACCCGAGCTCTTTCCGGGCTTAATTTATCGT CTCGCACAGCCCAAGATATGCCTACTAATCTTCGTGTCGGGCAAGGTGGG TAGCGAAGGCTGGTGTATGAGGCGCCACCGAAACCATCTGCGACACTCGA GTGCTTGCTGCAGTAAGGCAACTTTTGAGTACTGTGGCACGCTGAACCAC CGAAATGACCAGTTTTTTTAGAGCAACTTGCTCTCTTTCTTGTTCACTCT GTACACTAGCAATGCACAACTCCCTCTGTAAGTGGCATCCTCGCACCGGG ACTCGCCAGAAGGCTCAGACGACGGGCGACCTATTCTGCTTTAGTTTCTA CGGTGCTCGATGGAATGAATATGCGTGACAAGCAAGCCCCCCATATCCCA TGACACGTTGCTACCTCTCCCTTGTCATTACCCTACGGGCTTATACGTTT AACGGCCCGTGTCCAGGTCGTGCTCACAGGGGGCAAGACCGCCGAGGATC TAGAAACGGCCTTCAAGGCCATATACCCCGTTTTATGCTCCTTCAAGAAG GCGACAGTGCTAATGCAAAGTAGCGCCACACGCCCGCACAAAAGGGCTAA AATATGAAAATAATTGAAGGGATGTGTGCGTGCGGGAGATACTGGGCATG AGTCATAGGTTTTGCTGTGAACTATGTCGCCTGTTGCGTACCAGTATCCT TTCTGGTATTGATCACAGCTACCAGGTTTGCGGAAGAGCTCTTCATGTAG ATAAATAACGCGAACATACAACTTTGGAAGCACGAGGTAAACGTCGGCTT AGGGAAACCCCAATTTTGGACGTAAATGATTGACGAGGTAGAGCACTTGT GGTGATATATATATTCCTGGAAACGATGGGAGCCAGTCATGTTTCGTGTG GCATATAACCCGGCTTGGTACGGTGATGCTTTTCACTCACCAGCCTTTCG GGTTTCGTAGGACATTCAACATGGTTTCGAAGATAGAGAACATGTTTGTT TTTGGGTTTAGCTGTTTGTTTCTGTACCTTTTGTGTCGGGGGTGATTAAA AATATCGTCAGTAGTACAGTGAAAAACAGGATGTGTTATGAGCATCCATA TGGTGTAATTGTGATACACAAGGTTTGGTCCAAATCCATCTTCGTTAGAC CATTTCTTAGCCAAGAAGTCGCTGGGCGTACATATTTTGATTGTTCTTTT TGCTTGAGACCAAGAAATCTCGCAAATTCGTATCGGGGTCCGGAAATAGT AACAGTCATATTGAATCGGGCGATAGAGTATCGGAAGAATAATATATTTC ACACCACCGTGAATATTCTTCGCTGTTGCGGGTGGGCTTCGGTCTGAATA CGAAAGGCTTGTCGTTTTAGGTGTCAAACATGTTGCCATCGTGGTGTTAC TGGAGAGCGTGTTTCCAGGTGAGGCAAGAACGTGCAGCAGATGGAACTCG CCGCGTGTATTACGTGCAGCACACCGTAAACAAAATATTTTCCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig880:27272..30717-

>mRNA_H-paniculata_contig880.16712.1 ID=mRNA_H-paniculata_contig880.16712.1|Name=mRNA_H-paniculata_contig880.16712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig880:27272..30717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCGTCAGGGCTCTGCGGAGACGGGCGGCTCAGGTGCAGCAGACGC
AGCGGTCCCAGTAGGGCCCAAGTCGGAGGCAGAAAAAGCGATGGAGCCAC
AGAAGATTGGGCCATTACTTGAACATGGCGGATGCGAGCTCCGCATCGTC
AACGTGACAGCTACCGCGAACGTGGGCTGCACGCTGGACCTGCAGCGCGT
AGTGATGCGCGCTCGTAACGCGGAGTATAACCCCAAGCGCTTCTCTGCCT
GTATGTCTCGTCAGGGCTCTGCGGAGACGGGCGGCTCAGGTGCAGCAGAC
GCAGCGGTCCCAGTAGGGCCCAAGTCGGAGGCAGAAAAAGCGATGGAGCC
ACAGAAGATTGGGCCATTACTTGAACATGGCGGATGCGAGCTCCGCATCG
TCAACGTGACAGCTACCGCGAACGTGGGCTGCACGCTGGACCTGCAGCGC
GTAGTGATGCGCGCTCGTAACGCGGAGTATAACCCCAAGCGCTTCTCTGC
CTGTGTTATTCGATTGATCGACAAGAGAGAGCCCAAGGCAACTGCGCTAG
TTTTCAAGACGGGCAAGGTGGTGGTTACCGGAGCCCGCAGCAACAGGGCT
GTGGACTACGCTTGCTCAAAATTTGCTGCTATTCTGGGCAAACTTGGCAA
CGATACCAGCAAGTTCACGTTATTCGATTGATCGACAAGAGAGAGCCCAA
GGCAACTGCGCTAGTTTTCAAGACGGGCAAGGTGGTGGTTACCGGAGCCC
GCAGCAACAGGGCTGTGGACTACGCTTGCTCAAAATTTGCTGCTATTCTG
GGCAAACTTGGCAACGATACCAGCAAGTTCACTCTGGAGGCTGATCGGCG
GGTGCACAATATGGTTGCCACAACGGATTTAGGATTTCCCATACGCCTGG
AAGGTCTAGTGGCCTCGGCGCACGGCGAGCACTGTAACTACGAACCCGAG
CTCTTTCCGGGCTTAATTTATCGTCTCGCACAGCCCAAGATATGCCTACT
AATCTTCGTGTCGGGCAAGTCTGGAGGCTGATCGGCGGGTGCACAATATG
GTTGCCACAACGGATTTAGGATTTCCCATACGCCTGGAAGGTCTAGTGGC
CTCGGCGCACGGCGAGCACTGTAACTACGAACCCGAGCTCTTTCCGGGCT
TAATTTATCGTCTCGCACAGCCCAAGATATGCCTACTAATCTTCGTGTCG
GGCAAGGTCGTGCTCACAGGGGGCAAGACCGCCGAGGATCTAGAAACGGC
CTTCAAGGCCATATACCCCGTTTTATGCTCCTTCAAGAAGGCGACAGTGC
TAATGCAAAGTAGCGCCACACGCCCGCACAAAAGGGCTAAAATATGAGTC
GTGCTCACAGGGGGCAAGACCGCCGAGGATCTAGAAACGGCCTTCAAGGC
CATATACCCCGTTTTATGCTCCTTCAAGAAGGCGACAGTGCTAATGCAAA
GTAGCGCCACACGCCCGCACAAAAGGGCTAAAATATGA
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