mRNA_H-paniculata_contig8799.16707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8799.16707.1
Unique NamemRNA_H-paniculata_contig8799.16707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8799.16707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8799contigH-paniculata_contig8799:4601..4930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.606741-CDS-H-paniculata_contig8799:4600..49301622931102.606741-CDS-H-paniculata_contig8799:4600..4930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 4601..4930 +
1691481591.2775571-CDS-H-paniculata_contig8799:4600..49301691481591.2775571-CDS-H-paniculata_contig8799:4600..4930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 4601..4930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8799.16707.1prot_H-paniculata_contig8799.16707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8799 4601..4930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8799.16707.1

>prot_H-paniculata_contig8799.16707.1 ID=prot_H-paniculata_contig8799.16707.1|Name=mRNA_H-paniculata_contig8799.16707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
FRNNSEKIARRGTNKTALFGSILSGCATPGGRQSVPLSPQNLSAPHKELY
ASRTASRPSAARVSQPTLPLRRARHLLPRAHQPEANMRAERRRSKRVGRM
VRFSAISRS*
back to top

mRNA from alignment at H-paniculata_contig8799:4601..4930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8799.16707.1 ID=mRNA_H-paniculata_contig8799.16707.1|Name=mRNA_H-paniculata_contig8799.16707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig8799:4601..4930+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGTAATAATTCCGAAAAAATTGCGAGAAGGGGAACTAACAAGACGGC
CCTTTTCGGCTCCATTTTGAGCGGCTGCGCTACGCCCGGCGGCCGACAAA
GCGTCCCCCTATCGCCACAAAACCTCTCAGCACCTCACAAAGAGTTGTAC
GCCTCTCGTACAGCTTCCCGACCGTCTGCGGCGCGAGTATCGCAACCAAC
ATTACCACTCCGGCGAGCCCGACATCTTTTGCCGAGAGCCCATCAGCCCG
AGGCAAACATGCGAGCTGAGCGAAGAAGGTCGAAACGTGTTGGCCGTATG
GTACGCTTTAGCGCTATCTCCCGGTCATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8799:4601..4930+

>mRNA_H-paniculata_contig8799.16707.1 ID=mRNA_H-paniculata_contig8799.16707.1|Name=mRNA_H-paniculata_contig8799.16707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig8799:4601..4930+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGTAATAATTCCGAAAAAATTGCGAGAAGGGGAACTAACAAGACGGC
CCTTTTCGGCTCCATTTTGAGCGGCTGCGCTACGCCCGGCGGCCGACAAA
GCGTCCCCCTATCGCCACAAAACCTCTCAGCACCTCACAAAGAGTTGTAC
GCCTCTCGTACAGCTTCCCGACCGTCTGCGGCGCGAGTATCGCAACCAAC
ATTACCACTCCGGCGAGCCCGACATCTTTTGCCGAGAGCCCATCAGCCCG
AGGCAAACATGCGAGCTGAGCGAAGAAGGTCGAAACGTGTTGGCCGTATG
GTACGCTTTAGCGCTATCTCCCGGTCATGATTCCGTAATAATTCCGAAAA
AATTGCGAGAAGGGGAACTAACAAGACGGCCCTTTTCGGCTCCATTTTGA
GCGGCTGCGCTACGCCCGGCGGCCGACAAAGCGTCCCCCTATCGCCACAA
AACCTCTCAGCACCTCACAAAGAGTTGTACGCCTCTCGTACAGCTTCCCG
ACCGTCTGCGGCGCGAGTATCGCAACCAACATTACCACTCCGGCGAGCCC
GACATCTTTTGCCGAGAGCCCATCAGCCCGAGGCAAACATGCGAGCTGAG
CGAAGAAGGTCGAAACGTGTTGGCCGTATGGTACGCTTTAGCGCTATCTC
CCGGTCATGA
back to top