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Homology
BLAST of mRNA_H-paniculata_contig8754.16678.1 vs. uniprot
Match: A0A6H5KKX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX4_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.420e-34 Identity = 97/212 (45.75%), Postives = 119/212 (56.13%), Query Frame = 1
Query: 172 EEETLEKYFRPGKFNADTSQLNEACLVVKQFIAQE-CGNLANTSGMDQLCRCFHYMVMTIFGVQDAAAAASAGNGSGSDGGLG-ESSWMFAATSFYSVDDNLSGQAHRPMNRGSSLDRLPVK-------DLRSCCMDPRGKQLLSLLLAMPTDYSA--SKNLFGLLTEPRETWYYLSFTSPPLPPQTVAKLRHEPGCASLLFGNSRLYTHVL 774
EE+TL +F +TS+L AC V+QFIAQE CG +AN D+L F ++ IFG QDA +G S G E+SWMFA TSFYSV LS A +P G S R D R C M+P LLSLLLA P + S +KNLF +L EP++ WY + TSPP+PP T+A LRHE +LF NSRLYTH L
Sbjct: 9 EEQTLHTFFGEHIPGGETSKLRPACTFVQQFIAQELCGTIANDPTFDELWMHFQAILGGIFGKQDATKGPESGVTSRICGSTTFENSWMFATTSFYSVS-GLS-DALKPTRAGGSSSRNSNSRRRNRPGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEPQKVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCL 218
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 791 |
| Cds size | 678 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8754.16678.1 >prot_H-paniculata_contig8754.16678.1 ID=prot_H-paniculata_contig8754.16678.1|Name=mRNA_H-paniculata_contig8754.16678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MNRSTGPSSAMGPVLGEELEEEETLEKYFRPGKFNADTSQLNEACLVVKQ FIAQECGNLANTSGMDQLCRCFHYMVMTIFGVQDAAAAASAGNGSGSDGG LGESSWMFAATSFYSVDDNLSGQAHRPMNRGSSLDRLPVKDLRSCCMDPR GKQLLSLLLAMPTDYSASKNLFGLLTEPRETWYYLSFTSPPLPPQTVAKL RHEPGCASLLFGNSRLYTHVLRWSHH back to topmRNA from alignment at H-paniculata_contig8754:2080..9973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8754.16678.1 ID=mRNA_H-paniculata_contig8754.16678.1|Name=mRNA_H-paniculata_contig8754.16678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7894bp|location=Sequence derived from alignment at H-paniculata_contig8754:2080..9973+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGGTCTGAAATGTAGTTAAGATTGGTGGGGAAGAACATGTTTTTACTTT
CATACTAATAGTACCACATCGGTGAACATCCTTCCGGCTAGTACAGGCCA
CCCTCCCGAGGATGAACAGGTCGACTGGGCCGTCGTCGGCCATGGGCCCG
GTGCTGGGAGAAGAACTAGAGGAAGAAGAGACACTGGAAAAGTACTTCCG
CCCGGGCAAGTTTAACGCTGATACATCGCAGCTGAACGAGGCGTGCCTCG
TCGTGAAGCAGTTCATTGCTCAGGAATGGTCAGTGCAGAGAGAGTATAAC
TGTTAGTACTGAAAGTACAGTACAGATGTACAAGAGGACACCAGCACATT
GCAATCTCCTAAGTCCTTGGCTGCTGGCAGGATTGCTGCACATCAATAAT
GTGTTGTTGTGACGAACGTTTACTTGTGCTGGGCTGATCTTAGTGCAGGT
AGGGTCATGATGAGGTAAATCATGAATAGTACCTCCTGTACTGTACGGTA
CTATACTGTTGCTTCCCAATCTCTGGATTCACCCTGTTCTCTCGACGAGC
TAGATCCAAGCACTGACTGTCTGTCGTCGCAACTCGTCTGTCCTTTCACG
CAAATCTCCACGAACTTTTGCGAGATAACAACTCTGTCGTATCACTACAC
AGCCGTACAGCCTCCATAATTTTCGAGAACGTGGAGTATGGACAAATATT
TACAAAAAAGGGTGTTAAACAACGTACATATATATGTATATCTGGTGCCG
TATCGCGCCAAACAGAGGCTAACGTCTGCAGCAGAGTAAGGTCTAATATC
CGAGCTAGTAGTTTGGGCACTTTGTTTCTCTCTGCATGTTGTTTTGGGAC
TATCTGCGTTTGTGGTGTTTCCCAAGTCCTTTCCATGTTGCAACGTGGCA
ACTACTAGTATACCATCTGTAACTGTCATGATCAGTAGAAACCTCGACAT
GTACAGACATAACTAATTTGCTCAACATGACTATCGTGTTCCTGAAGAGA
ATCATTTCGTCTTCCCTTTCCTCGATACAACACCCCCCTAACCAAGAAAA
GGTGTGGTTGATCGACATCTACTTGTTATGAGATGTTGATAGCGGGACGT
GACAATCATTGTCTAAAGTTACGGTTCCGTCCCCAATCCCCGGGGTTATG
TAATGTAACCTCAATTCGAGTTCGGAGCGGCAAGCAGACAGCGCCGCCGC
CCCTTCTCCTGTCAGACTTGCGACAACCCAGGGCTGGTACTGAAAGTACA
GCAATAGTCAGCTAATACAAGAGACTAGACCACTGACAGGACCTACAACA
TAGTCAGTAACAGGACACAGTAACCTTAGGCGTGTGAGATAATCCGTAGG
CCCAATTTTAGTTATCATCACATTCTTGAGTACGAATAAAAAAAAATGCG
TACATCCTACTTACTCTATACCTACAACACGATGGATGATGACTTTTAAA
AAAACGATGATGCCGAGAAGAATCAAACCCCTACATTGTAGATTGTGAAG
TTGTTCTATACTATCCGAAAAGTGCGTCTATCCAATGATGGAGCGCAACC
CCCCCCCCCCCCAGCATTTTGGACAAGAATAGCAAAAACATCCAATTATC
GATAGAGTACTTCAGCCGATAGTGTAGATTGGGTGATGAAGACATCACAA
TGGCAACGCAGGGACATAAGATGAAGAAATGAGACATGATGCAGAGCGAC
AGCTACGCTAACCGGCGCAGCTTGTGTGTTGTCCTTTCCCCACCCACAAT
AGCCCGCTGCGCATTCACCAAAGATTTGTTTTTCAAAAGTAACTTAATTA
TAGAATTGAAATTTATGTTCCGAATCGTTGATCGTCACAACACCTCAGCG
TATTCATGAGCAAGAGACACCTGAGTAGGTCGGAACTTTGGGCTTTAGGC
TTTATGCTTGACCTTTATTGGAATATTGAAATAAAACTACACGTGTACAT
GCCGAATAATGTTTGGAACAACGATTTAACTTTCCTTGTCGGGGCGAGTT
GGATCATGACAGTACTTACAGTTCGATTTGCTAGTCGTCATATTCCTTGT
GCTATTAGAGGACGTGGGAATAAATCCCCTCCCCTCCCCCCCCTCCCATG
CGCATCCCTTCGTTTTTGGCCGCTGCATGGACGCCTCCAACTTTAGTGGA
AACCTCGCCAACACGTCTGGCATGGATCAGCTTTGCCGTTGTTTTCACTA
CATGGTGATGACGATATTCGGCGTGCAGGATGCGGCCGCAGCTGCATCCG
CAGGCAACGGGAGTGGAAGCGACGGGGGGCTAGGGGAAAGCAGTTGGATG
TTTGCTGCGTGAGTTATGAAGACCTCTTGTTAGATTGGGTGGTCCTCGAA
GGGTTTTTAATGAGATACAGACAGAAGATACTTTCATCAAACTAGTAGGC
AAGATACCACAAACTACGCCAGTGGCGCGTGCCCCTTAAAAAGACGCCTG
GATTGAAAATGGAAACTGTTCTGAGAGGAATATTATCGTTGTCGTTATTA
TCGTCATCATTATTACCGCTTTATGTAACAAGCACTACTTGTCATTTCAC
ATGCATATATCTACATATATCTATGGAGAGCAAGAACGTTCTTGGGGTTC
CTGGAGTTCCTGAACGTCGACCCCCCTACACAACTACAAGTTCCATTTTT
TCCCACTGTTGAAACATCGTTTCTAGCTGCTTTGGACCCTGGATGATGAC
CAGTTTATCAGCTACAGAACTAAACTCAAGTGCATCCTCCGCACTACTCC
CCAAGATTTGGAACCAACCCTCGCAAGAGGCGGTCTCCCCTCGAGAGCCT
GTTTCCCCTGGGAGCATCGTCTCACCATGTATATATATATATATATAAAT
ATATCCCGGTCGGGAGCGTCATGTCTCCCTCTTCCCGCGCCAGTGACCTG
TAAATAGTCGAACAAACGGGTGCGACGCGTAGTTAGCGTACTATTTCATA
CAACGAATCCTGAATACTTGTCTGCCATCGTGTTTATTATCCCGCAAGGT
ATATATATATATACCAGGAAATCGGTATATGTATTAGAAGGCACTCGGTC
AATTGTGTTTCAAGTGTACGATCGTGTTGTCTTCTGGATGATAACTTGTA
TATATGTATACTTTTCGTAACTACACAAATCTTCAATATAATGAAGAAAA
CTGACGAGCTAGCTTGCATTTTTTTCTTTTCCCCTTTTAAGAGCTGTCCA
ACGCACCGATTTAGTATTTACGATGGAATCAGATGAGCGATATCTCGAAA
CGTTGGAGGTTTATTGTGTACATCGTAAACACCGAACCGATGATCCTTAA
CTTTCGGAGGTGGCTGTTACGTGCTTAGTTTTTGTTGTATATGACGCACG
GGACCCTAGTGGATAAACAAGGTGGCATTGCACCTCTGCCGCGAGCGTTG
TTTTACCGCTCGAGACTTCAACGCGTACCCTACCGTGCTGTGCAGGATAG
GGATAATACAAAGCGGCACATGCACAAGATGCTTTGCTCTTGGTGTGTAG
CCTCAACATGGATTCAACAACGTCACGACTCTGACTGTGCTCTGGCATGT
ATAACAGCGAGTTAATTTTGATGAAAAAAAAAATTCCATGTTCGGTCAGT
AAGTCGGCTAGATGGTTGTTTAATTGCGGTCACTTTTGTGGAAGGTCATG
GCACGTTTGTGTAGAGTGTACACGCGGATGATATGTTGATGCTTTCTGGT
GAAGGCAATAAGCCGCGCGCCCCCGCCTCCCTCACTAATTTGGTTTTATT
TTGAATGATGACGGTACACAAGTGCGATTTGAAGTCAGCTGCATAACCTT
GACTTTGTTACGATGGAGTTATCATATGGGCGTTATAGATCTACTAAAAC
TTTGGCAATCCTATCTACCTCCCTCCCCCCCCTCCCTCGCCTCTCCCTCA
CACATATGTGTGCGGTGCATTAACTCCCCTCCAACCTGTCATACATGACC
TTGTCACTGATGTTTGTTCCCATTGCACCGTGTCCCTTGCATGTTGATGT
TCACTCTTTTTTTTTTTGCCAGCACATCTTTCTACTCTGTGGATGATAAC
CTCAGCGGGCAGGCTCATAGACCAATGAACAGGGGTTCTTCCCTTGACAG
GTAGTGCACCGTATTGTGTACTGTAGTGTACAAAGGCGTAAGTTCTACCG
TAGACTGTAGCAGGGATACAACGATGTTCGTGGTATTGAGTTTCACCTAG
CAGTAACGGTTTAGTACCATATATTTATTATTAAAAAAAGGATGGTCTTT
CTCCAATTCAATCGTCAGCAATTCACTTGCTCAGACCCGCGGACACAGGT
AACTGTGTAAATGTAACAATGAGGATAGGTAACATCTGGTCTTTCTCCAA
TCCAGTAGTGAGTAGTTCACTCGCTCAGACCCGCGGTCATAGGCCACTGT
TTAAATATAAGAATCAAGACATGTGACACTTGGTCTTCCTCCAATCCAGT
AGTCAGTAGTTCACTCGCTCAGACCCGCGATCATAGGCCACTGTTTAAAT
ATAAGAATCAAGACATGTGACACTTGGTCTTCCTCCAATCCAGTAGTCAG
TAGTTCACTCGCTCAGACCCGCGGTCATAGGCAACTGTTTGAAAGTGAGA
ATGAGGACATGTGAAACTTGGTATTTCTCCAGTCCAGTGGTCAGTGGTCC
ACTTGGTCACATCCGCCTTCCGAGGATGGAAGTTCCCACAGGTGTGAATT
CACCGTACATCTACAGTGACACCGGAAGTTGTGTCGTTGAAAAAGATCTT
GTGAAGGTATATCTGTCATTAGATAGACGTGTTCTTCGTAACATTCATGG
ACTTTTTCGTTTTCGAGAGAATTGGGCCCGGAGAAAATTCGCCCTCGGGG
CGTTCTGACAGCACCCTACGATATGTGGGCCGTGTCCAGTGGACCTTCCC
CTTCTGGTGATGCACCAAGGCTTGACGGCTATCAACACGCGCCATCGGGA
ATACACTTGGATATAGAAATGTGCTACCAAAACAATCGCCCGTTATTGTT
TCATCATGTTGCGGCATGGGGCGATTGTGCTGAAAAACGCGTGAAAAAAA
ACGTAGATTTTGGTCAGCCGTTCGACCTCTGGGTTGCTACCATAGGTGCT
TGTGGTGTGGTGTATTGGGTCATACTCCAAGCGCGCGGCACTAGTTTATT
TTTCGCGGCCGATAAGACGCCATATTGTCTGTCTACATATACATTGTTGC
ACCCCTTGGAAAAATACGAATACTTGCGAATGATTCTCACAATAAACTGA
AAGTATTTGCTTGAGTTTGAGAACGAGTGGATAGATGAAATAAAGTACTC
ACCCCTGTCCATTCGATTTACGAGTATTATCAGCAGTCGTGGACGGTCCG
GGTCACATCGAATACGCGAGCTCATTCTGAAACTCACGCGAATACTTCCA
GTTTTTTGTGAAAAATCATATGCAAGTATTTGTTATTGTCCCGGGGGTGG
ATTGTTGCCATCCGATCATACTCCAAACTAGCGGGGTACCTTTTTTTTTT
CGAAGCTGATCTTACACACTTGACCCGGACACTTCAAAAACATGCTTATG
AAACGTTTCCGTAGTTTTGTGAAGAATTCACAATAGTGCCAGGAATAGAC
CCCATAGCTTGAAAGATCCAGCGTTTTTTTTGTTGTTTTTTTTGCTTGAA
GATCCAGTGTATATAATTTCCGGAACGAAAAAATGGCCAAATATGCCCTG
TCAGGCGTAAAAGCCTACCTAACGTCATGTTTCATTTTTGCTGCTCTTAC
CACCATGTCATCCGTATTGTTTGTATCGTGAACCGTCAGGCTACCTGTGA
AAGATTTGCGATCCTGCTGCATGGATCCACGTGGGAAGCAGCTTCTATCG
CTCCTTCTGGCCATGCCCACTGACTACTCGGCCAGCAAAAATCTATTCGG
GTTGCTCACGTACGTCCGTAGACTAGTAAGCATGGGGATTAGCAGCCACA
TTGTTGGGTGCAAGTGTCACAATTCAGACAGTACGGACAGCGTAAAAGGG
CGTGCAGACAAAGGCTTTGGAGACACGTAATTGTTTGTACAGTGCTTCCG
TGACCACCGCAAGGCACTGTACAGCTATCGCACGCATGAGCAAAGTGTGC
TGTGCGCCTTGCGCTCGATAAACGTGGTCTGCCCCGGAAATGCGCAAAGG
TTAAAATTAGACTTGAAATCTTGCATTGATTTATCAGTGTGAACTTAACA
TGAAATTTGCACTGCCTGCTTGGAGCGGTCTTGAAATAAGATGCGTATTT
GTGGGGAGAAATTATAAACTACTGGAGAGACCTCCAAAGTTCAGGGCAGA
GGTAGGTTTGACCTGATCTTTCAGTGAACTAACTTGTGGGCTGTGGAAGC
AGTGCGCAAAGTAACGGACCTGCAAACGTATCGGATAAAGATGGAGGAAA
ATCTACGAATTTCTGAAAAATTCGAAATAAAATGTGGCCTCGAGGCTTCA
TATCCGCCGCACGTGGTATAGATGTGCAGCTTGTTTTCCACACTCTAGCG
CGCACATTCAGGGAAGTAGTGAAGATGTCGAGTGTCACATTTCGCCCCCG
AACTCGGAAGGACGCCGGCTCTAATCCAAAAATAAACAGTGTTTTCCTGC
TCTCGTGACCATTATTGAAGAGAAAATAACGAGGCATTTGACCGCGGTGG
CGAGTGCGGGACACGGGTTTTTGGGCTTCCTCACACTTTTTTTTTTTTTT
GACGAAACTTCACACAGGTGTTCCTTACTTCATCCCCTATGTTGGCGCCT
CGTTGCCGGTATTACTAGTAGTGACGTTTTCCCTCGCCATTTTTCGGGGG
TCATATGTCACTGTACCGTCTGAAAGTGCCTTGGAACCCCCGTTGGAGGA
ATGCGCGATAAGTACAGGCGACAAGCCGTCAACTTCGGAATTTTAGTGAG
GATCCCGTGTTCGAAATTTCGATTCCAAAGTCGCAGAAACACCGGCTACT
TTCATCCAGAAACATTTTTTTTTTTTTTTCACGCTTGCACGGCCTATACC
GAAGTCAGTATAATAACGCATTCAACCGCAGTTGCGAGTCCTCTGTATGT
TTTTTGGATTTTTCGTTCGCGTTTTTTGAGTTTTTGGACGAAACTTCGCA
CGCGTGTTTCATGGTTGGTTCCTGAGATCATCCGCGTTTGTTCTTTTTTT
TTTTTTCTTGCGGTTTCGATCGCCGGTTCTCTGGGGTCCCACCGGTTCCT
TAGGCCGGTAAATACACTAGAAACCCAGAAAACAGGTCAACAAAGCCGAA
AGAAAAAAAAGGACCAACACGGGTGACTTCGGGCACCTAAAAAGGAACAC
GTCTGCAAAGGCTCCTCTAAAAAAAAAGAAAAATGTAAAAAACGAACAAA
AAATCGCAAAAACACGTTATTCTGGATTTCTATCGTAAACCAGCCGTGAC
TAATGACGAATACGTCGACAAAAATGATCAACCAGCTCTAGGCAAACGAT
AAGTGCATCTCAGGTGCACAAGGGGATTGTTTTTTCGTTATTCGGGTCAT
TCATCTGTTGCGTTCGTCTGGCACACTTGAGCGACACCAATAACGCCATA
ATCCTATTGGGTGTCGGACTTGAAAAATCGCAGATGAGCATACTTGTATG
TCGTATTTATATAGTCAGGATTATGGCCTAAACAAACTCAGTATTAAACG
TGCTTTATTACGTAAAATTGAAGTATAGCCCCCCCCCCCCCGCGCGCACT
CCTGGGGGGCTCGGAATCGCCTTGAAAAACGTCCTTGTTGCAGAGAACCG
CGCGAGACTTGGTATTATCTTTCGTTCACCAGCCCACCTCTCCCACCTCA
AACTGTGGCCAAGCTACGGCACGAACCAGGGTGTGCCTCGCTGCTCTTCG
GCAACTCGAGGTTGTACACGCATGTTCTGCGTTGGAGTCATCAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig8754:2080..9973+ >mRNA_H-paniculata_contig8754.16678.1 ID=mRNA_H-paniculata_contig8754.16678.1|Name=mRNA_H-paniculata_contig8754.16678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig8754:2080..9973+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAACAGGTCGACTGGGCCGTCGTCGGCCATGGGCCCGGTGCTGGGAGA AGAACTAGAGGAAGAAGAGACACTGGAAAAGTACTTCCGCCCGGGCAAGT TTAACGCTGATACATCGCAGCTGAACGAGGCGTGCCTCGTCGTGAAGCAG TTCATTGCTCAGGAATGATGAACAGGTCGACTGGGCCGTCGTCGGCCATG GGCCCGGTGCTGGGAGAAGAACTAGAGGAAGAAGAGACACTGGAAAAGTA CTTCCGCCCGGGCAAGTTTAACGCTGATACATCGCAGCTGAACGAGGCGT GCCTCGTCGTGAAGCAGTTCATTGCTCAGGAATGTGGAAACCTCGCCAAC ACGTCTGGCATGGATCAGCTTTGCCGTTGTTTTCACTACATGGTGATGAC GATATTCGGCGTGCAGGATGCGGCCGCAGCTGCATCCGCAGGCAACGGGA GTGGAAGCGACGGGGGGCTAGGGGAAAGCAGTTGGATGTTTGCTGCTGGA AACCTCGCCAACACGTCTGGCATGGATCAGCTTTGCCGTTGTTTTCACTA CATGGTGATGACGATATTCGGCGTGCAGGATGCGGCCGCAGCTGCATCCG CAGGCAACGGGAGTGGAAGCGACGGGGGGCTAGGGGAAAGCAGTTGGATG TTTGCTGCCACATCTTTCTACTCTGTGGATGATAACCTCAGCGGGCAGGC TCATAGACCAATGAACAGGGGTTCTTCCCTTGACAGCACATCTTTCTACT CTGTGGATGATAACCTCAGCGGGCAGGCTCATAGACCAATGAACAGGGGT TCTTCCCTTGACAGGCTACCTGTGAAAGATTTGCGATCCTGCTGCATGGA TCCACGTGGGAAGCAGCTTCTATCGCTCCTTCTGGCCATGCCCACTGACT ACTCGGCCAGCAAAAATCTATTCGGGTTGCTCACGCTACCTGTGAAAGAT TTGCGATCCTGCTGCATGGATCCACGTGGGAAGCAGCTTCTATCGCTCCT TCTGGCCATGCCCACTGACTACTCGGCCAGCAAAAATCTATTCGGGTTGC TCACAGAACCGCGCGAGACTTGGTATTATCTTTCGTTCACCAGCCCACCT CTCCCACCTCAAACTGTGGCCAAGCTACGGCACGAACCAGGGTGTGCCTC GCTGCTCTTCGGCAACTCGAGGTTGTACACGCATGTTCTGCGTTGGAGTC ATCACAGAACCGCGCGAGACTTGGTATTATCTTTCGTTCACCAGCCCACC TCTCCCACCTCAAACTGTGGCCAAGCTACGGCACGAACCAGGGTGTGCCT CGCTGCTCTTCGGCAACTCGAGGTTGTACACGCATGTTCTGCGTTGGAGT CATCAC back to top
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