mRNA_H-paniculata_contig8748.16670.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8748.16670.1
Unique NamemRNA_H-paniculata_contig8748.16670.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A6H5LR46_9PHAE (Sec15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR46_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 8.170e-103
Identity = 169/197 (85.79%), Postives = 184/197 (93.40%), Query Frame = 2 
Query:  332 SRADRKKDRAKREAIDSLVQEVCQGPAADVTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQRLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            SR+ RKKDRAKREA+D LVQE+C GPAADVTTVIRTALERG+R DLQ AL+EFE KK +EISRVCHRHYSEFIDSVE+LMKM A+MV +KDQ+VDL+ RVQATGGSAL+TAKELLQQRHA RNVEAA+QVI QCDGVVNMVM+AFVHIHEERYYSALNTVDQINQRLDA+DS KFASQLRRWMPSLTEMINKATKEE
Sbjct:   22 SRSTRKKDRAKREAVDLLVQELCTGPAADVTTVIRTALERGYRADLQVALKEFEAKKGSEISRVCHRHYSEFIDSVEDLMKMKAEMVGLKDQVVDLDARVQATGGSALSTAKELLQQRHATRNVEAASQVIRQCDGVVNMVMEAFVHIHEERYYSALNTVDQINQRLDALDSVKFASQLRRWMPSLTEMINKATKEE 218
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A835YRQ1_9STRA (Exocyst complex component 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ1_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.580e-32
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 2 
Query:  575 MTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQRLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            M  D+  +  Q+ DLN  VQ TG +AL  AK LL+QRHA  NV A   V+ +C G+V+ VMDAFVHIHEERYY+ALNT+D I + L ++   +FA+QLR WMPSLTEMI++ATKEE
Sbjct:    1 MRQDLADLSSQVHDLNDGVQGTGRTALVAAKTLLRQRHAVSNVAATAAVVARCRGIVSTVMDAFVHIHEERYYTALNTLDAIQRSLSSLGGIRFAAQLRCWMPSLTEMIDQATKEE 116
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A6A5CHW5_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5CHW5_NAEFO)

HSP 1 Score: 95.9 bits (237), Expect = 2.730e-18
Identity = 52/161 (32.30%), Postives = 85/161 (52.80%), Query Frame = 2 
Query:  419 VTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQRLDAMDSAKFASQLRRWMPSLTEMI 901
            +T  I+T  ERG      N+L  F  K+K EI  +C  +Y EF+ SV +L  + +D  ++K +I+ LN  VQ  G  AL   K+L+   + A N+++A QV+  C  V  +       I E++Y+SAL T+D + + +  +    FA  L + +P   + I
Sbjct:   76 ITGSIKTVYERGKEDSFYNSLDVFLEKQKTEIEHICSENYEEFLKSVSQLKSVRSDGKTLKKKIISLNEDVQKAGREALECGKQLVMYHNIADNIQSAMQVVDLCKHVSTLASKVHTQIQEQKYFSALKTLDNLEKSVRTVHLFSFAQYLEKQIPIFRKKI 236
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BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A1Y1Y464_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y464_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 2.370e-17
Identity = 51/165 (30.91%), Postives = 85/165 (51.52%), Query Frame = 2 
Query:  431 IRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQI-NQRLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            I+T    G +      L  F +KK+ EI ++C+ HY EF+ SV++L+K+    VS+K++IV  N  +Q  G S +   KEL++ R    N++ A + +  C  ++N+     V I E +YY AL T++++ N  L  +    FA  +    P +   I  A   E
Sbjct:   32 IQTIYRTGKQETFLEQLTSFIIKKEREIEQMCNSHYQEFVQSVDQLLKVRQGTVSLKNKIVGFNDELQQAGSSIIEQKKELIETRKVLLNIDTAIETLQTCLHILNLANRVNVQIDEHKYYPALRTLEELQNVHLQEVSHYDFAKYIAECTPVIQNKIKDAVTTE 196
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BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A0L0HS39_SPIPD (Exocyst complex component SEC15 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HS39_SPIPD)

HSP 1 Score: 90.9 bits (224), Expect = 1.290e-16
Identity = 50/169 (29.59%), Postives = 93/169 (55.03%), Query Frame = 2 
Query:  419 VTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQ-RLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            ++ VI+  L+ G      + L  F  +K+ EI ++C  HY EF+ SV++L+K+    V++KD+I DLN ++Q++G   +   KE+++ R    N+E A + +  C  V+++       I   +YYSAL  ++++    L  +    FA  ++ ++P + E I +A  EE
Sbjct:   45 ISYVIKQILQTGKEDVFADQLTGFIHRKEAEIEKMCVFHYQEFVQSVDQLLKVRQGTVTLKDKIKDLNEQMQSSGSKTIAKKKEIIESRQTLLNIELAVESLQSCLFVLDIANKVNASIESRKYYSALKMLEELQATHLRPVTQYSFAKHMQEYIPIMQENIREAVLEE 213
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A1S8VSP5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VSP5_9FUNG)

HSP 1 Score: 89.4 bits (220), Expect = 2.990e-16
Identity = 44/166 (26.51%), Postives = 89/166 (53.61%), Query Frame = 2 
Query:  428 VIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQ-RLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            +I+   + G        L  +  +K+ EI R+C+ HY EF+ SV++L+K+ A   +++D+I  +N  +Q +G   +    EL++ R    N+E + + +  C  V+++     + ++ ++YYSAL  +D++    L  +    FA+Q+  W+P +   I +A  +E
Sbjct:   61 IIKQIFQTGREDAFGEQLSHYCARKEGEIERICNLHYQEFVQSVDQLLKVRAGTATMRDKIKAMNDDMQLSGSKIIEKKSELIENRRILLNIETSLETMQSCLFVLDITNRVSIQVNNQKYYSALRMLDELKSTHLALVSQYSFAAQISDWIPYMQNAIREAVVDE 226
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: D2W2L7_NAEGR (Exocyst complex family protein, subunit Sec15 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W2L7_NAEGR)

HSP 1 Score: 89.0 bits (219), Expect = 5.550e-16
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 2 
Query:  419 VTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQRLDAMDSAKFASQLRRWMP 883
            +T  I+T  ERG       +L  F  K+K EI  +C  +Y EF+ SV +L  + +D   +K +I+ L+  VQ  G  AL   K+L+  R+ A N+ +A QV+  C  V  +       I EE+Y+SAL T++ + + +  +    FA  + + +P
Sbjct:   67 ITGSIKTVYERGKEDTFYESLDNFLDKQKTEIETICSSNYEEFLKSVSQLKSVRSDGKILKKKIIGLDEEVQKAGKEALECGKQLVLYRNIAENIHSALQVVDLCKHVSTLATKVHQQIQEEKYFSALKTLEHLEKSIRTVHKFNFARFIEKQIP 221
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A433PMF6_9FUNG (Exocyst complex component SEC15 n=2 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PMF6_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 5.700e-16
Identity = 50/166 (30.12%), Postives = 89/166 (53.61%), Query Frame = 2 
Query:  428 VIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQI-NQRLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            +IR   E G +    + L  F  KK+ +I R+C+ +Y EF+ SV++L+K+    + +KD+IV LN  +  TG       KEL++ R   +N++ A + +     V+ +      H+  ++YYSAL T+D++ +Q L  +   +F++ L   +P +  MI  A   E
Sbjct:   57 IIRQVTETGKQDAFLDHLDTFIRKKETDIERMCNNNYQEFVQSVDQLLKVRQGTIKLKDKIVGLNTEIHKTGSRLAAKKKELIETRRTQQNIDQAIETLQTSLLVLELANKVNTHMENQKYYSALKTLDELQSQHLRHVMQFEFSTYLSNSIPVMQSMIKDAVTNE 222
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A507EAS9_9FUNG (Exocyst complex component SEC15 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAS9_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 5.730e-16
Identity = 47/169 (27.81%), Postives = 94/169 (55.62%), Query Frame = 2 
Query:  419 VTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQ-RLDAMDSAKFASQLRRWMPSLTEMINKATKEE 922
            +  +I+  L+ G      + L  F  KK+ EI ++C  HY EF+ SV++L+K+    V++KD+I+DLN ++QA+G    +  +++++ RH   N+E   + +  C  V++M      ++   +YY+AL  ++++ +  L  +    FA  ++ ++P + E I +   EE
Sbjct:   47 IAYIIKQILQTGKEDLFADQLTIFIGKKEAEIEKMCAFHYQEFVQSVDQLLKVRQGTVTLKDKILDLNDQMQASGSKIASKKRDIIENRHTLLNIELGVESLQACLFVLDMANKVNANVENRKYYTALKMLEELQKAHLRPVMHYTFAKHMQDYIPVMQENIREVVLEE 215
[Close]
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Match: A0A507CHU9_9FUNG (Exocyst complex component SEC15 n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CHU9_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 1.430e-15
Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = 2 
Query:  488 FEVKKKNEISRVCHRHYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQRHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQ-RLDAMDSAKFASQLRRWMPSLTEMI 901
            F  +K++EI R+C+ HY EF+ SV++L+K+ A  V +K+ I++LN  +Q TGG  +   +E++  R    NVEA   +  QC  V+ +     +HI   ++Y+AL  +++I    L  +   +FA  +   +P L E I
Sbjct:  114 FIHRKESEIERMCNFHYQEFVQSVDQLLKVRAGAVHLKNNILELNQDLQVTGGRIIEKKREVIDYRRRMLNVEATIDMFQQCTFVLEIANKVNLHIENRKFYAALRLLEEIQSTHLRTVAQYEFAKHMMDCIPKLRENI 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8748.16670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LR46_9PHAE8.170e-10385.79Sec15 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YRQ1_9STRA3.580e-3257.76Exocyst complex component 6 n=1 Tax=Tribonema minu... [more]
A0A6A5CHW5_NAEFO2.730e-1832.30Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A1Y1Y464_9FUNG2.370e-1730.91Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A0L0HS39_SPIPD1.290e-1629.59Exocyst complex component SEC15 n=2 Tax=Spizellomy... [more]
A0A1S8VSP5_9FUNG2.990e-1626.51Uncharacterized protein (Fragment) n=1 Tax=Batrach... [more]
D2W2L7_NAEGR5.550e-1631.61Exocyst complex family protein, subunit Sec15 n=1 ... [more]
A0A433PMF6_9FUNG5.700e-1630.12Exocyst complex component SEC15 n=2 Tax=Endogone s... [more]
A0A507EAS9_9FUNG5.730e-1627.81Exocyst complex component SEC15 n=1 Tax=Powellomyc... [more]
A0A507CHU9_9FUNG1.430e-1533.09Exocyst complex component SEC15 n=2 Tax=Synchytriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8748contigH-paniculata_contig8748:3930..9479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog2880.D7G8J1
Preferred nameEXOC6
KEGG koko:K19985
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000145,GO:0000902,GO:0000904,GO:0001505,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002262,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0005911,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006903,GO:0006904,GO:0006928,GO:0006935,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008037,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009453,GO:0009506,GO:0009605,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009875,GO:0009888,GO:0009932,GO:0009987,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016049,GO:0016079,GO:0016080,GO:0016081,GO:0016192,GO:0016197,GO:0016477,GO:0017016,GO:0017137,GO:0017156,GO:0019899,GO:0019953,GO:0022008,GO:0022406,GO:0022412,GO:0022414,GO:0022416,GO:0023052,GO:0023061,GO:0030030,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030424,GO:0030707,GO:0030855,GO:0031175,GO:0031267,GO:0031410,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034101,GO:0034613,GO:0040007,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043679,GO:0044306,GO:0044421,GO:0044424,GO:0044444,GO:0044448,GO:0044456,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0045055,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0048278,GO:0048468,GO:0048477,GO:0048489,GO:0048513,GO:0048534,GO:0048544,GO:0048588,GO:0048589,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048868,GO:0048869,GO:0048870,GO:0048872,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0055037,GO:0055044,GO:0060321,GO:0060429,GO:0060560,GO:0061564,GO:0065007,GO:0065008,GO:0070062,GO:0070177,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090130,GO:0090132,GO:0090522,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098793,GO:0098916,GO:0099003,GO:0099022,GO:0099023,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140029,GO:0140056,GO:0150034,GO:1903561,GO:1990778
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsKOG2176@1,KOG2176@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons5
Model size922
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8748.16670.1prot_H-paniculata_contig8748.16670.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8748 4162..9479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.4043365-UTR-H-paniculata_contig8748:3929..41611622931097.4043365-UTR-H-paniculata_contig8748:3929..4161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8748 3930..4161 +
1691481588.8249276-UTR-H-paniculata_contig8748:3929..41611691481588.8249276-UTR-H-paniculata_contig8748:3929..4161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8748 3930..4161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.4238262-CDS-H-paniculata_contig8748:4161..42991622931097.4238262-CDS-H-paniculata_contig8748:4161..4299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 4162..4299 +
1691481588.8369563-CDS-H-paniculata_contig8748:4161..42991691481588.8369563-CDS-H-paniculata_contig8748:4161..4299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 4162..4299 +
1622931097.439857-CDS-H-paniculata_contig8748:6810..69121622931097.439857-CDS-H-paniculata_contig8748:6810..6912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 6811..6912 +
1691481588.847876-CDS-H-paniculata_contig8748:6810..69121691481588.847876-CDS-H-paniculata_contig8748:6810..6912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 6811..6912 +
1622931097.4582198-CDS-H-paniculata_contig8748:8291..84261622931097.4582198-CDS-H-paniculata_contig8748:8291..8426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 8292..8426 +
1691481588.8589635-CDS-H-paniculata_contig8748:8291..84261691481588.8589635-CDS-H-paniculata_contig8748:8291..8426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 8292..8426 +
1622931097.4711661-CDS-H-paniculata_contig8748:8781..89041622931097.4711661-CDS-H-paniculata_contig8748:8781..8904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 8782..8904 +
1691481588.86951-CDS-H-paniculata_contig8748:8781..89041691481588.86951-CDS-H-paniculata_contig8748:8781..8904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 8782..8904 +
1622931097.4832938-CDS-H-paniculata_contig8748:9287..94791622931097.4832938-CDS-H-paniculata_contig8748:9287..9479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 9288..9479 +
1691481588.879588-CDS-H-paniculata_contig8748:9287..94791691481588.879588-CDS-H-paniculata_contig8748:9287..9479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 9288..9479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8748.16670.1

>prot_H-paniculata_contig8748.16670.1 ID=prot_H-paniculata_contig8748.16670.1|Name=mRNA_H-paniculata_contig8748.16670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MPPATIATSSSRPSEARRGSGNNSSRTVKASLESRADRKKDRAKREAIDS
LVQEVCQGPAADVTTVIRTALERGWRLDLQNALREFEVKKKNEISRVCHR
HYSEFIDSVEELMKMTADMVSIKDQIVDLNGRVQATGGSALTTAKELLQQ
RHAARNVEAATQVIIQCDGVVNMVMDAFVHIHEERYYSALNTVDQINQRL
DAMDSAKFASQLRRWMPSLTEMINKATKEE
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mRNA from alignment at H-paniculata_contig8748:3930..9479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8748.16670.1 ID=mRNA_H-paniculata_contig8748.16670.1|Name=mRNA_H-paniculata_contig8748.16670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5550bp|location=Sequence derived from alignment at H-paniculata_contig8748:3930..9479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAAGGCATTATAGTGTGCTAGTTAGAGAAAACGGTCTTCTTTGAAGC
TTCTGCTTCAGGGTGAATATATTCAGATGATAGGAGTATTGTCTTATGCG
TGAACTTTTGTCTACGTAGGGTTTTCTTCTGACTGCGGGTCTGCGCGGAC
ATAACCATCCGCAGATTGCCTGTCGGCATAAATTGGCCTTCCTCGAGTAC
ATCGAAGCGGTCGTAACTCCCCTGTTACGCCGATGCCGCCGGCCACGATT
GCGACTAGCTCTTCGCGTCCATCAGAGGCAAGAAGAGGGAGTGGAAACAA
CAGCAGCAGGACGGTCAAGGCGTCCCTGGAGAGTCGCGCAGACCGGAAGA
AAGACCGTGCTAAGAGGGAGGTAAGCTGTTGCTCTTGAACAGGGTTCAAT
GGAACAAAACACCCTTGGGTAGTATTACAGATAGTATAGTAGTACGGGGC
AGCTGTTGCAGTTAATAGTATACATTTGTCTGTAGCTTCTGCTGCGTTTC
CGGATTGCGGCTCACTGCTGCTGGTAATGACATTTTCTGCCGTCCCGGTA
GTGCGTGTACGATACCTAAATTGCAAGTGATTCCACCTACTTTATATCCC
GGTCAAGACAATTCCAGTACAACAGCAATCTACGTAGATCTTGGATTCCC
TGCTACATGAGCAGTGCAGCCGAGCGGCCACAATCTACCCTTCTCCATGT
CCACTGCGTAAAAAAATTCAGTAATTTCACACCCTGATGTCTCTTACATG
AGGGAATATTTATAGTCAGAAACCCTTTGAAAGCTGAACTAGTGGAATGG
CCGCCAGTAAAGTACAGTACAGCAATGGTCTGTCACATGTACATTGTCTC
AAACTCGAGTAAGTGCGCAAATAGCAAATAGAGGGTATACTTATGAGTAT
TTAGTAGAACCACGACTACTACTTATAAGACCATGTAGCCTGTGTTTTAT
CCTCGACTCACGGAGAACGCCTCGCTGGGAAATTAGGGGACTGTGTCCAT
GAAGATTCATTTTTAGAAGTGACTTGATTACAAAGATGAAAAAAGTATTC
CGGAGCGACGATCATCGATACCTTGGAGCCCTCTAATTTGGGATATGGGA
TTTGGGCTTGTTTCATGCCAAGCATTCTCATCGCTTGCTATTAATAACCG
CGAAAAAAAATGAATCCGTCAAGTGTTCTGAAAAATTTAGAGTTTTCCGT
GGCCAATCATCTATGTAATCGCCCCAGAGGCAACAACTGTGTGTACGTGT
TTTTTGGGGGGGTTTTAACCCCCGGAAGGCTGAGGCGAAAACCTTTTCCG
CTGCTTCCACATTCAGGCATTCGCCCAAACATGTCTACATTTCCTTTAAC
AGAACAGAGTTGTTTATTCCTCTGCGGGGTAGGCGCCACCCTGATTCGGC
TGAACCAAGTAGGCAGTGTAGGACTTTCACCTACTAAAAGACCTCATACT
TTGTGTTTGCTTGAGTAACCCACAAATGAAGGGTAAAATACTAACTTATA
CCTGTACCATGGTATTCCAAAAACAGAGCCACGACTTCCGTACTTGTATC
TACACGTCCATGCAACCTATTTATTTATTTATTTATTTATTTATTTATTT
CATCCTCGACTCATGCACAGCAGCTTGCTGCTAGGTAAAGTGAGAACAAG
CGTCGTTGTGCCTGTGAAGATTGGTTTTTAGAAGTTACTTGGGTACAGAG
TACAAAGTGAAAAACTGTTCCGCAACACGACCATCACTGCACAGTACAGT
ACATGCGTGCTGGAAAGGAAAAGAAATGCGCTTATATGGCAGGGCGTTGC
AAACGCATTTCGAAAGTTGGGAATATTGTCAGCGATCTATGTACATAACG
TACTGTAACAGTTCCCCTATCGCTGTTTTCCCCTATCTGATCTTGGAGTG
TATATAGGCTGGGCCCAGCTGAAGATCCCAATGACTTTGAGCGGGGACTG
CTTCCGTGTACTTTTGGGTTCTTGATCTGGCACTTTTGAGGGTGGATGGG
CAACAAAATTGAGCTTGCATTGTGTTCAATGTCAACTTTCAACACATGCC
CCTCCCTCGCTTAGTGTAAAGTGTCCTCAAAGACTCTTGCATTCAAGTTC
TGATCTTATATCAGACTAGGACCTCAAGGAAAATATTTATTTATCAGCTT
ACTGTATGTACGACAAAAAATATTGATTCAGTTACAGTGAATGAAAAGGG
GCTGAGTCTTGCGTGAATGCTGTTGCCATTACAAACGCTTGCTGGTTGGT
AGGGAGTCCCTTGAGTTTGTTGCAAACTGTCTCCCTGTTTCGCCATGTTT
CGAAACGAGTGAAAACAAACAGCCAGAAACAAATTCATTGTACACAATAT
TGATATTATCAACCAGCGCTGAAAGCCTTTGGTAAAAAAGAAAAATGCTA
CCATATGCGCTTCCCGTCCCAAACACACAAGTGTACTGCATGTTTCCCCG
TAATTGATTCAATTTATGGACAATGGCTAAGTATCCCTGCATCTTGAAGA
TGCCGAGCATACCTCCGTTTTGTTTTAAGTACCTCCCGCCGGAAATGAGC
TTCGTCCTCACGAGGATGGGTGATCAGTAGTCTAACAAGTGCCACATGTG
AAACGTGAAAACGCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCGAAAA
TAGAAAAACATGCCATGTCTGCTTCGGCGTTCAAAAAGCAATATGGGTAG
GGGAACGGTGTACGTTGTCATGTTCTCTTTTAGCACGATTTGTTATGCTG
TGCACTTCGCTGCTGTGTATTCGTGATGTTATGCGGGTAAGATTTATTCA
CCGCCCGTTTTTTTTTTCTACGTTTTATGCATTTTGCTGCTCGCTTGTTT
GTTTGGTTGTTGTTGCCCTCGTCGTCGATAGGCGATAGACTCATTGGTGC
AGGAGGTCTGCCAAGGACCCGCTGCCGATGTCACCACCGTTATCCGCACG
GCCCTGGAGCGCGGGTGGCGCTTGGACCTTCAGGCACGTTGTCTTGCTGT
ATTAATGGATAGATAGATGGATGGGTAGGTAAGTAGATAGACAGATAGAT
TGACTTCATGTATGTTGATCAGTTGGTTGATGAATAAATAGATAGATCTT
GGGTGTTTTGGCCAAAAATAATCGAATCAAGGAACGAGAACAAAAAACAG
AAGGAGGACGAACTACTAGTGTGTATGATGAAAGCATTTGGATAAAGTGT
GTTGCTGTTCGAGGAATGCAGTCAGTGTGTGTGTGTGTGTGTGTGCGAAA
AGAGAGGCGGGGAGGCGTTACTTGTGCGAACCTGATTACCTCACGAGCTA
TTGACGTGTGCGTTAATAAGGGACAGAGGTGGGCGTTGCAGAGCTTGTAC
ACTATACTACGTGTGACACATGCATTAGTATTTTCAAAGGTAAAATGAAA
AATTCGGGAGGGGGGGCAGGGGGAGGGGTTGCATCGTGATGATGTAACTT
TGTTATATCTGATGATGATTGCACCGACGAAGACAAATGTCAAGGCCTGC
TAGACACATTGGTCACAGAACGGTTCGGTGTTTCTACGTCCTCAATTTGC
TTGTTTTTCGCATAGCACAGTGGGGGTAGCCATCCTAGTCACTCGTGGTC
TCTGACGGTTTGCTATTTTCACTCCAAAGGTCTGTATATGTCGAACTATA
GAGTTCCTATCCAAGCTGGCCTTCGCTTTTTTCCTTTGTCTTTTTTCACA
AGAGTACATTGTAGTCGTTTGCTGTTGACTATCAGGATTAGGAAACAGGC
AGGGTGCCGAATTAGTCCTGGAGTTGTGCTGCTGCTTCCATCGCGCCGCG
GTGACATCAAAGACCATCCTCGAACTGTGCTGTGCCGTGTAACGCAACTT
TTAACACCGCTCCACAGAGTTCGCTCGATTTTTGAATCTATGACGCACTG
TAGCTGCTGCGCAAGTACGTTTTTAGCTTAATCTTTCCAGAAACGATGTG
ATGATGATGGCTCGCTGCGTTCATAATGTCTGCATTGTTGTTTTAGTTTG
TAATAGTGGTGCTTTGAAACAATTTGTTTTCATCCTTGGGTGACTGAAAA
AGTAAGAGCCAGACGGGAAAAGTCAGTGCGCTCTCTTTTCTGTGACTTTG
TTCGGATTTAGAGTAAGTAAGCAGTCTATCCAAATCATATTTTGAATGGA
AAATGATGAAGAACAACATGTATCTCTGGGTGGGAGGTATGTATGCCCCC
CGAATAGATTATTATAGACCATGATTTTTGTCTTTTTCAAGTGCTTAGGT
GATGAAGTGCTGCCTGCCTGCCTGCCTGCCTGTCTGCCTGCTTGCTTGCT
TGCTTGCCTACATCCCTGGTGTAACGAACGGGGGCTTGGTCGCTTGTTCC
TCTGCAAGGCAGAACGCGCTGCGAGAGTTCGAGGTAAAGAAAAAAAATGA
AATTTCTCGCGTTTGCCACCGGCACTACTCTGAATTCATCGACAGCGTGG
AGGAGCTCATGAAGATGACAGCCGATATGGTCAGCATTAAGGATCAGGTA
CAGACAATTTAAAAAAAGGGGGGGGGGAGGAACAAAAAAAATGCAGTAAG
TAGGAGCTGGAATTTGGAAGGAATCCGGTTTGTTCAGACTCTGAATGCCG
CCCAACATCTGAAAAATACTTGCAGAAGCGTCGGACTTTTATCCGTTATT
GTAGGTGACCTACTACATATTCCTCGATGACTTGTTTTGTCTCCTCTGTC
CAGTCGCCTAGCGGCACACCTGTGCACACATGTGTTGTGTTTGTTTCCTA
TTGACGATGAATTTCGTTCGATTGTATGTTTTGTGTGTTGTACGTTTACA
TATAATGTAACGTAATGTAATGACGATGGGATGGGATGGGATGGGATGGC
AGATAGTGGATCTTAACGGGAGAGTACAGGCGACGGGAGGGTCTGCTTTG
ACAACTGCCAAGGAGTTACTGCAGCAGAGGCATGCCGCACGAAACGTGGA
AGCTGCCACGCAGGTCATCATCCAGGCAAGATTTCTTTACCGTATGGGCA
TGCTGTTATCTTCGTCGTCGTATTTGTTGTTGTTGGTGGTCGTAGTTGTG
TTCGTGGTGGTTGTGATGATGGTGGTGGTGGTGGTCCTGGTCGTCATAGT
AGTTGCAATGGACTTCATATGCGCCGCGAGACTTCACCATGCCTTTGGTA
TACATTGCGTACAGTTGCCTGCTGCGTTGTGTATGTGCGTGCCTATGTGT
GCGTGTCTGTATGTGCATATATTCTGCCTATTCCTTCACTTGTACTTGTT
TTCTCCCTCTCTATTCCAGTTTTCCGTTATCGTCTATTTTATTTTTTTGC
TTTCCTTACTTTGCCCCCATATATATTTTTTCTTGGTATGTGTGCGTGTA
TGTTTCAGTGCGACGGGGTAGTAAACATGGTAATGGACGCCTTCGTGCAC
ATTCACGAGGAACGCTACTACTCGGCGCTGAATACGGTGGACCAGATAAA
CCAGCGGCTCGACGCGATGGACAGCGCCAAGTTCGCCTCGCAGCTGCGGC
GGTGGATGCCGTCTCTGACGGAGATGATCAACAAAGCCACGAAGGAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8748:3930..9479+

>mRNA_H-paniculata_contig8748.16670.1 ID=mRNA_H-paniculata_contig8748.16670.1|Name=mRNA_H-paniculata_contig8748.16670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig8748:3930..9479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCGGCCACGATTGCGACTAGCTCTTCGCGTCCATCAGAGGCAAG
AAGAGGGAGTGGAAACAACAGCAGCAGGACGGTCAAGGCGTCCCTGGAGA
GTCGCGCAGACCGGAAGAAAGACCGTGCTAAGAGGGAGATGCCGCCGGCC
ACGATTGCGACTAGCTCTTCGCGTCCATCAGAGGCAAGAAGAGGGAGTGG
AAACAACAGCAGCAGGACGGTCAAGGCGTCCCTGGAGAGTCGCGCAGACC
GGAAGAAAGACCGTGCTAAGAGGGAGGCGATAGACTCATTGGTGCAGGAG
GTCTGCCAAGGACCCGCTGCCGATGTCACCACCGTTATCCGCACGGCCCT
GGAGCGCGGGTGGCGCTTGGACCTTCAGGCGATAGACTCATTGGTGCAGG
AGGTCTGCCAAGGACCCGCTGCCGATGTCACCACCGTTATCCGCACGGCC
CTGGAGCGCGGGTGGCGCTTGGACCTTCAGAACGCGCTGCGAGAGTTCGA
GGTAAAGAAAAAAAATGAAATTTCTCGCGTTTGCCACCGGCACTACTCTG
AATTCATCGACAGCGTGGAGGAGCTCATGAAGATGACAGCCGATATGGTC
AGCATTAAGGATCAGAACGCGCTGCGAGAGTTCGAGGTAAAGAAAAAAAA
TGAAATTTCTCGCGTTTGCCACCGGCACTACTCTGAATTCATCGACAGCG
TGGAGGAGCTCATGAAGATGACAGCCGATATGGTCAGCATTAAGGATCAG
ATAGTGGATCTTAACGGGAGAGTACAGGCGACGGGAGGGTCTGCTTTGAC
AACTGCCAAGGAGTTACTGCAGCAGAGGCATGCCGCACGAAACGTGGAAG
CTGCCACGCAGGTCATCATCCAGATAGTGGATCTTAACGGGAGAGTACAG
GCGACGGGAGGGTCTGCTTTGACAACTGCCAAGGAGTTACTGCAGCAGAG
GCATGCCGCACGAAACGTGGAAGCTGCCACGCAGGTCATCATCCAGTGCG
ACGGGGTAGTAAACATGGTAATGGACGCCTTCGTGCACATTCACGAGGAA
CGCTACTACTCGGCGCTGAATACGGTGGACCAGATAAACCAGCGGCTCGA
CGCGATGGACAGCGCCAAGTTCGCCTCGCAGCTGCGGCGGTGGATGCCGT
CTCTGACGGAGATGATCAACAAAGCCACGAAGGAAGAGTGCGACGGGGTA
GTAAACATGGTAATGGACGCCTTCGTGCACATTCACGAGGAACGCTACTA
CTCGGCGCTGAATACGGTGGACCAGATAAACCAGCGGCTCGACGCGATGG
ACAGCGCCAAGTTCGCCTCGCAGCTGCGGCGGTGGATGCCGTCTCTGACG
GAGATGATCAACAAAGCCACGAAGGAAGAG
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