mRNA_H-paniculata_contig8735.16661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8735.16661.1
Unique NamemRNA_H-paniculata_contig8735.16661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A6H5JFY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY6_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 7.690e-95
Identity = 140/183 (76.50%), Postives = 161/183 (87.98%), Query Frame = 1
Query:  247 RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYVPG 795
            RSH FRNL+ GQRINSFPRT+ECTRKDALSRNMNRMS+VHG RHF F PRGFVLPAERE LR+AML T+E EAWIVKPA+SACGRGI++T+ F+DMP  T ++GNWIAQ+YV +P+LLDGLKFDLRLYVAVTSFRPLRVYLH+EGLCRLATE Y  D  SF N+F+HLTNYSIN+++ RY  G
Sbjct:  174 RSHVFRNLKRGQRINSFPRTYECTRKDALSRNMNRMSEVHGARHFSFAPRGFVLPAEREALREAMLNTSEGEAWIVKPANSACGRGIYITKNFADMPVGTGADGNWIAQQYVEDPMLLDGLKFDLRLYVAVTSFRPLRVYLHDEGLCRLATETYRPDAPSFGNKFIHLTNYSINRRSNRYEHG 356          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: D8LTG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG1_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 5.050e-93
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 1
Query:  247 RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYVPG 795
            RSH FRNL+ GQRINSFPRT+ECTRKDALSRNMNRMS+VHG RHF F PRGFVLPAERE LR+AML T+E E WIVKPASSACGRGI++T+ F+DMP  T  +GNWIAQRYV +P+LLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATE Y  D  SF N+F+HLTNYSIN+++ RY  G
Sbjct:  159 RSHVFRNLKRGQRINSFPRTYECTRKDALSRNMNRMSEVHGARHFSFAPRGFVLPAEREALREAMLNTSEGETWIVKPASSACGRGIYITKNFADMPVGTGPDGNWIAQRYVEDPMLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATETYRPDAPSFGNKFIHLTNYSINRRSNRYEHG 341          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A7S3XKD1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKD1_HETAK)

HSP 1 Score: 222 bits (565), Expect = 1.890e-66
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 1
Query:  247 RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKN 777
            +++AF+  R  QR+N FPRT+E TRKDAL+ N+NRM ++HG+R F F+P  FVLP ERE L +AM +      WIVKPA SACGRGI++  + S MP     EGNWI   Y+  PLL+DG KFDLR+YVAVTSF PLR+Y+HEEGLCRLA+  YS+D S   +RF+HLTNYSINKKN
Sbjct:    2 KAYAFKAFRPWQRVNQFPRTWELTRKDALAHNLNRMREIHGDRSFSFMPLCFVLPKEREALAEAMRK--RQRTWIVKPAGSACGRGIYLATKLSQMPEM--KEGNWIVSEYIDRPLLIDGFKFDLRIYVAVTSFHPLRIYVHEEGLCRLASRQYSNDPSLVRDRFIHLTNYSINKKN 174          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A7S1CKS8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKS8_9STRA)

HSP 1 Score: 226 bits (577), Expect = 8.310e-66
Identity = 126/263 (47.91%), Postives = 159/263 (60.46%), Query Frame = 1
Query:    4 SYHVASCMCELCRRARAKRKPGPPTRPTFKIVGPEPTLVSATLEAHGFKRGGGKNGRGARRGKGTGSTPWRILCYSLLSLH-RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            S HV++C C  CR+    R  GP  R T+K+      LV A   +HGF++              T    W  L     S H +S+ F+ L   Q++N FPR++E TRKD L+RNM RM Q+HGERHF F+P+ FVLPA+  E R A         WIVKP++SA GRGIF+TR +    +  R E      RY+ NPLLLDG KFDLRLYVAVTSF PLR+Y+HEEGL R AT+PY  D   + N FMHLTNYSINK + ++V
Sbjct:   12 SRHVSTCTCPACRKRVRSRLTGP-LRLTYKMNHSGVGLVHAIFRSHGFRQ--------------TTKDGWNALW---TSAHLKSYVFQGLNRYQKVNQFPRSYEVTRKDNLARNMRRMEQMHGERHFEFMPKSFVLPADIAEFR-AEWAAQRGSPWIVKPSASARGRGIFLTRDWD--VATERFEDGCTVSRYIDNPLLLDGYKFDLRLYVAVTSFHPLRIYVHEEGLARFATDPYDPDPRHYENHFMHLTNYSINKHSKKFV 253          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A2R5GCY3_9STRA (Tubulin polyglutamylase TTLL5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCY3_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.120e-64
Identity = 119/278 (42.81%), Postives = 165/278 (59.35%), Query Frame = 1
Query:    1 TSYHVASCMCELCRRARAKRKPGPPTRPTFKIVGPEPTLVSATLEAHGFKRGGGKNGRGARRGKGTGSTPWRILCYSLLSLHRSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAES---------------EAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            T  HV+SC C  C +A+   +   P +  +K       L+ ATLE+  F +              T    W +L  S     R H +++L   Q++N FPRT+E TRKD L RNM RM ++HG+RHF F P+ FVLPA+R E ++   ++ +                E WIVKPA+SACGRGI++T   +++P     +GN +  RY+ANPLLLD  KFDLR+YVAVTSF PLRVY+++EGL RL TE Y +D  S  NR++HLTNYS+ KK+ ++V
Sbjct:  125 TRSHVSSCTCAQCVKAKRAAR-NAPIQLRYKAG---IRLIEATLESSKFVK--------------TTKDDWNVLWVS--GALRPHIYQSLLRHQKVNQFPRTYEITRKDQLCRNMRRMQELHGKRHFDFFPQSFVLPADRSEFQRMAKDSLQRQQPPATSSRPDEETPELWIVKPAASACGRGIYLTDNLAEIPLSGGEDGNVLVSRYIANPLLLDQRKFDLRIYVAVTSFDPLRVYIYQEGLVRLTTEEYRNDAESLKNRYVHLTNYSVQKKSKKFV 382          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: UPI001EF8769F (tubulin monoglutamylase TTLL4-like n=1 Tax=Diprion similis TaxID=362088 RepID=UPI001EF8769F)

HSP 1 Score: 187 bits (475), Expect = 6.260e-52
Identity = 95/181 (52.49%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  247 RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            +S  F++LR  Q++N FP TF+  RKD L RN++RM   HG++ FGF+PR FVLP E   LRQA  + A  E WIVKP +SA G GI V  R+S +P     +   I Q+Y++ P+L+ G KFDLRLYV VTSF PLR+Y++ +GL R A+E Y DD +  SNRFMHLTNYSINK +  Y 
Sbjct:  130 KSLTFKSLRESQKVNHFPGTFQLGRKDRLWRNLSRMIMKHGKKEFGFVPRTFVLPQELRGLRQAWEKAAGREKWIVKPPASARGTGIRVVHRWSQIPK----KKPVIVQQYLSKPMLIGGAKFDLRLYVLVTSFNPLRMYIYPDGLVRFASEKYVDDLNCLSNRFMHLTNYSINKASATYT 306          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A8C1E4Q8_CYPCA (Tubulin tyrosine ligase-like family, member 5 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1E4Q8_CYPCA)

HSP 1 Score: 181 bits (458), Expect = 4.200e-51
Identity = 100/234 (42.74%), Postives = 140/234 (59.83%), Query Frame = 1
Query:   88 FKIVGPEPTLVSATLEAHGFKRGGGKNGRGARRGKGTGSTPWRILCYSLLSLHRSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            FKIV  E  LV   L  HGF                  S  + ++     S  + +  R+L+  Q++N FPR+FE TRKD L +N+ RM Q HG ++F  +P+ FVLPAE +E   +   + +  AWI+KP +S+ GRGI++    S +P     + N +  RY++NPLL+DG KFD+RLYV VTS+ PL +YL+EEGL R AT  Y   T++  N+FMHLTNYS+NKK+  YV
Sbjct:   60 FKIVRTESRLVRGILVNHGFHE------------VHPNSNDFNLMWTG--SHLKPYLLRSLQDFQKVNHFPRSFELTRKDRLYKNIQRMQQTHGFQNFHIVPQTFVLPAEYQEFSSSF--SKDKGAWIIKPVASSRGRGIYLVSSPSQIPL----DENILVSRYISNPLLIDGFKFDVRLYVLVTSYDPLLIYLYEEGLARFATVKYDHATANIKNQFMHLTNYSVNKKSSDYV 273          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A8C2JM79_CYPCA (Tubulin tyrosine ligase-like family, member 5 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2JM79_CYPCA)

HSP 1 Score: 182 bits (461), Expect = 4.500e-51
Identity = 101/234 (43.16%), Postives = 140/234 (59.83%), Query Frame = 1
Query:   88 FKIVGPEPTLVSATLEAHGFKRGGGKNGRGARRGKGTGSTPWRILCYSLLSLHRSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            FKIV  E  LV   L  HGF                  S  + ++     S  + +  R+L+  Q++N FPR+FE TRKD L +N+ RM Q HG ++F  +P+ FVLPAE +E   +   + +  AWI+KP +S+ GRGI++    S +P     E N +  RY++NPLL+DG KFD+RLYV VTS+ PL +YL+EEGL R AT  Y   T++  N+FMHLTNYS+NKK+  YV
Sbjct:   68 FKIVRTESRLVRGILVNHGFHE------------VHPNSNDFNLMWTG--SHLKPYLLRSLQDFQKVNHFPRSFELTRKDRLYKNIQRMQQTHGFQNFHIVPQTFVLPAEYQEFSSSF--SKDKGAWIIKPVASSRGRGIYLVSSPSQIPL----EENILVSRYISNPLLIDGFKFDVRLYVLVTSYDPLLIYLYEEGLARFATVKYDHATANIKNQFMHLTNYSVNKKSSDYV 281          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: A0A1R2CL98_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CL98_9CILI)

HSP 1 Score: 184 bits (466), Expect = 4.570e-51
Identity = 103/238 (43.28%), Postives = 150/238 (63.03%), Query Frame = 1
Query:   70 PPTRPT----FKIVGPEPTLVSATLEAHGFKRGGGKNGRGARRGKGTGSTPWRILCYSLLSLHRSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINK 771
            PP++P     FK +G E  L+   LE +GFK G  KN              W ++ +S  ++ RS  ++NL   Q++N FPR+ E T+KD L +N+ +M  ++G+RH+ FIP  ++LP +   L + M   +ES  WI+KPA+ + GRGIF+T R SD+P         +A RY++NPLL++ LKFDLR+Y+AVTS  PLR+Y+ +EG+ R ATEPY  D  +  NRF+HLTNYS+NK
Sbjct:   83 PPSQPNVGYMFKFLGGEVKLIRWLLEDNGFKEG--KNN-------------W-LIGWSNTAM-RSQIYQNLTPFQKVNHFPRSHEITKKDNLFKNITKMQSLYGKRHYNFIPETYILPNDSMRLSEEMDRDSES-LWIIKPAAGSQGRGIFLTNRISDVPQAQAM----VASRYISNPLLINMLKFDLRIYIAVTSMDPLRIYIFKEGIARFATEPY--DLKNPRNRFVHLTNYSLNK 296          
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Match: UPI00062564CD (tubulin polyglutamylase TTLL4-like n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI00062564CD)

HSP 1 Score: 181 bits (458), Expect = 2.130e-49
Identity = 92/181 (50.83%), Postives = 121/181 (66.85%), Query Frame = 1
Query:  247 RSHAFRNLRHGQRINSFPRTFECTRKDALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIVKPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLRLYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKKNGRYV 789
            +S AF++LR  Q+IN FP TF+  RKD L RN++RM   HG++ FGF+PR +VLP +    RQ   +T   E WIVKP +SA G GI V  R+S +P     +   I Q+Y++ P+L+ G KFDLRLYV VTSF PLRVY++ +GL R A+  Y DD +  S+RFMHLTNYSINK +  Y 
Sbjct:  140 KSMAFKSLRESQKINHFPGTFQIGRKDRLWRNLSRMMIKHGKKEFGFVPRTYVLPQDLRGFRQVWEKTGGKEKWIVKPPASARGTGIRVVHRWSQIPK----KKPVIVQQYLSKPMLIGGAKFDLRLYVLVTSFNPLRVYIYPDGLVRFASVKYRDDINYLSDRFMHLTNYSINKTSSTYT 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8735.16661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFY6_9PHAE7.690e-9576.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTG1_ECTSI5.050e-9377.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XKD1_HETAK1.890e-6659.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CKS8_9STRA8.310e-6647.91Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GCY3_9STRA5.120e-6442.81Tubulin polyglutamylase TTLL5 n=1 Tax=Hondaea ferm... [more]
UPI001EF8769F6.260e-5252.49tubulin monoglutamylase TTLL4-like n=1 Tax=Diprion... [more]
A0A8C1E4Q8_CYPCA4.200e-5142.74Tubulin tyrosine ligase-like family, member 5 n=1 ... [more]
A0A8C2JM79_CYPCA4.500e-5143.16Tubulin tyrosine ligase-like family, member 5 n=2 ... [more]
A0A1R2CL98_9CILI4.570e-5143.28Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
UPI00062564CD2.130e-4950.83tubulin polyglutamylase TTLL4-like n=1 Tax=Athalia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8735contigH-paniculata_contig8735:5940..9953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.9
Seed ortholog evalue7.3e-80
Seed eggNOG ortholog2880.D8LTG1
Preferred nameTTLL5
KEGG koko:K16601,ko:K16602,ko:K16610
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001578,GO:0001654,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006464,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007423,GO:0008150,GO:0008152,GO:0009566,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0032501,GO:0032502,GO:0032504,GO:0035082,GO:0036211,GO:0040011,GO:0042995,GO:0043010,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060041,GO:0060271,GO:0070739,GO:0070740,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0097722,GO:0120025,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein polyglutamylation
EggNOG OGsKOG2156@1,KOG2156@2759
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-02_006230.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons6
Model size816
Cds size792
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.8386412-UTR-H-paniculata_contig8735:5939..59631622931095.8386412-UTR-H-paniculata_contig8735:5939..5963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8735 5940..5963 +
1691481588.0770657-UTR-H-paniculata_contig8735:5939..59631691481588.0770657-UTR-H-paniculata_contig8735:5939..5963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8735 5940..5963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.8589027-CDS-H-paniculata_contig8735:5963..61631622931095.8589027-CDS-H-paniculata_contig8735:5963..6163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 5964..6163 +
1691481588.0888445-CDS-H-paniculata_contig8735:5963..61631691481588.0888445-CDS-H-paniculata_contig8735:5963..6163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 5964..6163 +
1622931095.8752282-CDS-H-paniculata_contig8735:6722..68001622931095.8752282-CDS-H-paniculata_contig8735:6722..6800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 6723..6800 +
1691481588.0988295-CDS-H-paniculata_contig8735:6722..68001691481588.0988295-CDS-H-paniculata_contig8735:6722..6800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 6723..6800 +
1622931095.8911273-CDS-H-paniculata_contig8735:7439..75521622931095.8911273-CDS-H-paniculata_contig8735:7439..7552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 7440..7552 +
1691481588.1093476-CDS-H-paniculata_contig8735:7439..75521691481588.1093476-CDS-H-paniculata_contig8735:7439..7552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 7440..7552 +
1622931095.905961-CDS-H-paniculata_contig8735:8156..82791622931095.905961-CDS-H-paniculata_contig8735:8156..8279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 8157..8279 +
1691481588.1203609-CDS-H-paniculata_contig8735:8156..82791691481588.1203609-CDS-H-paniculata_contig8735:8156..8279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 8157..8279 +
1622931095.918669-CDS-H-paniculata_contig8735:9314..94351622931095.918669-CDS-H-paniculata_contig8735:9314..9435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 9315..9435 +
1691481588.1342998-CDS-H-paniculata_contig8735:9314..94351691481588.1342998-CDS-H-paniculata_contig8735:9314..9435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 9315..9435 +
1622931095.9327908-CDS-H-paniculata_contig8735:9796..99531622931095.9327908-CDS-H-paniculata_contig8735:9796..9953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 9797..9953 +
1691481588.1444037-CDS-H-paniculata_contig8735:9796..99531691481588.1444037-CDS-H-paniculata_contig8735:9796..9953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8735 9797..9953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8735.16661.1prot_H-paniculata_contig8735.16661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8735 5964..9953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8735.16661.1

>prot_H-paniculata_contig8735.16661.1 ID=prot_H-paniculata_contig8735.16661.1|Name=mRNA_H-paniculata_contig8735.16661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MCELCRRARAKRKPGPPTRPTFKIVGPEPTLVSATLEAHGFKRGGGKNGR
GARRGKGTGSTPWRILCYSLLSLHRSHAFRNLRHGQRINSFPRTFECTRK
DALSRNMNRMSQVHGERHFGFIPRGFVLPAEREELRQAMLETAESEAWIV
KPASSACGRGIFVTRRFSDMPSCTRSEGNWIAQRYVANPLLLDGLKFDLR
LYVAVTSFRPLRVYLHEEGLCRLATEPYSDDTSSFSNRFMHLTNYSINKK
NGRYVPGSAGYAY*
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mRNA from alignment at H-paniculata_contig8735:5940..9953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8735.16661.1 ID=mRNA_H-paniculata_contig8735.16661.1|Name=mRNA_H-paniculata_contig8735.16661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4014bp|location=Sequence derived from alignment at H-paniculata_contig8735:5940..9953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCATACCATGTAGCGAGTTGTATGTGCGAGCTTTGTCGCCGGGCCAG GGCGAAGCGAAAACCGGGACCACCCACGCGACCAACATTCAAGATCGTAG GCCCAGAGCCGACGCTCGTCTCAGCAACTTTAGAGGCTCACGGGTTCAAG AGGGGAGGTGGGAAAAACGGGCGGGGGGCTCGAAGAGGCAAAGGGACTGG GTCCACTCCGTGGCGCATATTATGGTCTTCGCAACATCTCAGGCGAGGAA CGCTTTGAAGTCTCCCTTAAGTAGCTGGAAACCTAAATGGGAGCATTAAG AACGTTGGATCTCATTAATTAATAGTTGTCGTCGTTCCTTCGCGAGGTTT GAGGTTTATACTTGGCACGGGAAAATGAGGGAGGGAGGGTTAGAGGTAGG GTGGATGCGTGCAGTTCGATTGAACTTCGGCGGTCTTTCCCCAGATGATT GGCCTTGTATTGTCTTTATTTGGTCAAATACTCCAGAGTACAGCATGTCA TTCACCCGGAAACTTGTGTTTCAGCGGATCACCTTCTTAAAGGTAATACA GGGAGAAGCTTTCTACACACAAACGCCAAAATATCTTATGTAATTTCGAG GAAACTATTGTCGCGTAGGTTCTCAAAGGTCAACGAGGGCTATGCAGTCG TGACCGAGTTGCCAAACAGCTGCATCGTAGATAATTTGCTAAACAGGTGA TTGCTCATCAGCGATCCAATCTATTCTATAGTTCATGTGGAGCCAAGCAA GCGACAAGTACGACAGATATATGCCCGCGTTAGCTACTCGTTACTCTCTC TCCACAGGTCTCACGCTTTCCGTAACCTGAGGCACGGCCAGAGAATCAAC AGCTTCCCCAGGTGAACAGGCGTCACATTAGCGGGATGTCAGGGTCGGCG CAAAGAAGCGGCGTGTAGCAGAAAGCAGCTCACCATTGAGCTATAGAGTC AGCGCTGACTCTATAGCTCAATGGTGAGCTGCTCTCTTCTACAGCCGTAA GTCGTGTTGTTCTTAAACGCGTGAGCACTCGGAACCAAATCGACTCTTAT CAAGCCAACACGGCAGGCTGCAAGCCGTGGGTTTTCATTAAAGCAAATGA TCGCGAAGTACGGCAGCAATGCTTCCAGTTGCAGGACTTGACGCTTGAAT CCGACCGTCTAAGCGCGTATTTTCTCGGGAATACAATTGGGGATTGTCGG GAAGATTTTAGGCTTTGTTGGCGCGTTTTGGGGTTGATATCATCGCACGC AGTCATAACTGAGATGGTAATGCTTTGTAGAAGGAGCTTTCCCGCAGACT TCAGAGCCAGTTACAATAGTTCTGCACTTGCGGGCACGCTGCTCGCTTTG GCGTTACGTGGGTATCACATTTGAGAGCATGTGGAGGAGGCTACTGCTTT GAGGTACTGTAGTCCCGACACAGATCATACTTCCAAAGGACACAAGAAGA AACTGCAAGCACGATGTCGCTGTTCGTCCCTTCTTAACCTGTCACGACAG GACGTTCGAGTGCACGCGAAAGGACGCACTATCTCGAAACATGAACCGCA TGAGCCAGGTGCATGGCGAACGGCATTTTGGATTCATTCCTCGAGGTTTC GTGCTGCCAGCCGGTGAGCGGGTGGCCATCTCCCCCCCCCCCTCCCCCTC CCCTCCCTTCCCCAACGATTCACTTCAATATTCCATTATGAAAATAAACT ACATGCAGATTGTAGAGGAATTTGTTTTCATCACTGTCGTTGTGTCGTGT TCAACATCCGTCTTGACAATGGTTTTGACAAAGAGGTCTTTATAGAGGCA CTGGTCGGTATACAATAAAAGGGACGACATAAAAAGAGTATGAGAGCATC TAGCTGGACCATGACGAGGCCATGATTTGCCCTGTCACAACGTACCTGAC CTTAGCTCGCTTCGTGCCATGTGCTTATGGTGTCGTTACTTCTCAAATTT TATGCTGCGTAGTTCGTGGATATGTAGGGATGATTCTTGCCCGGCTAGGT CATGTATTGCGAACTATAGAATATAGACGAGCGAGAGCTTCGATAAAACA TGAAGTGACTTCTTCTGCAGCGTTGATACAAAATACAGAAACAGTCTCGG TTGAAATATTGCGAGGCTCCACTTGAGTCGAGTGGGTGAACAAATCTGCT CCTTGACAAAACAGGCAGAGTGAGCATCCCTCTCATTGTACCCGAAAACC AATCAATGTTGCTGCAGAGAGGGAGGAATTACGCCAAGCAATGCTGGAGA CGGCGGAATCTGAGGCTTGGATAGTAAAGCCGGCTAGCTCGGCGTGCGGG CGTGGAATTTTCGTCACGAGGCGTTTTTCCGACATGCCATGTGAAGACCG CTAGTGATTTCTTAATATTCAAGCCTAATATGCATTTTCCGCGTCACAAC GTACAGCATACACACGAAGTGTAGCACCGAAGGTTGCACTTTTAATCAAG TTGCTTCGTGCTTCGTATGCAGTGGCGCTGCTTCTCGTAGTTATGAGGCT AACTAGCGGGATCCACACGGTCGAATGCCCTAAACAAGGATTACTAGCGC TATCCAGTAGAGAACAACCAGCTTGTTGCCCTCCCTAACAGCTATTCTGC AGCCAGCTTTTCTGTCCGTCCCTCACGCGGGGAAAATCCCCCCCCCCCTC CTCCCACCTCCCCTCCCAAGCACAAACAACATCAATCTTCGCGTATGGAA TATTGCGTACACGGGCGAGGAATGCTGTCGGTAGGATAGTGCGGGAAAAG ACTCACGATTGGAGAAGCAAAAAGAAGCGACTGGAAATGACCATCATTGC CAAGAGAACAGTGCCACGTCTCCTCGAGGGCGCGCGGTCATACGAAAACA TGAATCCCTGTCCTGGTCTATGAATTAAATAGTGCCTCTACGTACTCACA CGTACCAATGGAGGCACGCCTAAATTTTTCTATCAAAATTAAGGCTGGAG GTGTTGTCTGCAGAAACGTAGGAAGTGGTAGGGTGTGCCATAACCGAAAT ATTTTAGTTGGAAAACGCCCTCAGGGAAATAAGGAGAAATATATGTAGGT GACTTGGGGGGAGGGTTGAAGGGTACGATGGAGAGGACTTTGAAATCATG GGATGGCGAAACGAAGGCGATATCGATTGTAGAGAATGGAAAATGACCTA AAAAGGCGGCAGCTGATGTAGACAGGATCTGTGAAATCGTTGTGAGCCAC CTTGACAAATTAGGAAGGAGTGATTGGCCATTGGAGATAGATCTTGGAGA AACAGTGCTCCGTCCTCTCGAGGATGCGTGGGTATTCGTCTAACAGCTAA GGCATGAATACGCCCCCCGCCCCATGCCGCAGCCCCCGCCCCGATTCATG CCATTGAACCAACTGCGCGTATCAGCGTGTACCAGGTCAGAGGGGAATTG GATCGCTCAGCGTTACGTTGCGAACCCTCTTCTACTAGATGGCCTCAAGT TTGATCTCAGACTCTACGTCGCTGTCACATCGTTCCGACCTCTTAGGTAC GACTAACGCAGCGCAAAAATGGTGAGGAGGGAGAAGGGGTACATTGAAAT CCCTGGAGAAGCACAGGCTGATTTTTTCAGCCACCGTCCTATCCGTATTC TTCGTGTTGAAGAATTAGTATGTTGGTTCATGAAGTTCTAACTAGCTAAT TAGCTAATCATCGACAACATCTGCAGTAGCGGGGTCCCAGGGGTGGGAGA GGGATCCACCTATATGTTATTGGATCATACCCTATGAAAATTGAGCGACG CCCACCCCACCCTCGAGTGACACCCCCCTCCCCCTCCCGTCCTCCCCGCT TCGTCTTTTCGGGTTCCCGTTCGTATTTGGAATCATACGCACTAACACAC GGAAAAGGGTGTATCTACATGAAGAGGGACTCTGTCGCTTAGCCACAGAG CCTTACAGCGACGATACCTCAAGCTTCAGCAACAGATTTATGCACCTTAC CAACTACAGCATCAACAAGAAGAATGGTCGCTACGTGCCTGGATCAGCGG GGTACGCTTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8735:5940..9953+

>mRNA_H-paniculata_contig8735.16661.1 ID=mRNA_H-paniculata_contig8735.16661.1|Name=mRNA_H-paniculata_contig8735.16661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig8735:5940..9953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGAGCTTTGTCGCCGGGCCAGGGCGAAGCGAAAACCGGGACCACC
CACGCGACCAACATTCAAGATCGTAGGCCCAGAGCCGACGCTCGTCTCAG
CAACTTTAGAGGCTCACGGGTTCAAGAGGGGAGGTGGGAAAAACGGGCGG
GGGGCTCGAAGAGGCAAAGGGACTGGGTCCACTCCGTGGCGCATATTATG
ATGTGCGAGCTTTGTCGCCGGGCCAGGGCGAAGCGAAAACCGGGACCACC
CACGCGACCAACATTCAAGATCGTAGGCCCAGAGCCGACGCTCGTCTCAG
CAACTTTAGAGGCTCACGGGTTCAAGAGGGGAGGTGGGAAAAACGGGCGG
GGGGCTCGAAGAGGCAAAGGGACTGGGTCCACTCCGTGGCGCATATTATG
CTACTCGTTACTCTCTCTCCACAGGTCTCACGCTTTCCGTAACCTGAGGC
ACGGCCAGAGAATCAACAGCTTCCCCAGCTACTCGTTACTCTCTCTCCAC
AGGTCTCACGCTTTCCGTAACCTGAGGCACGGCCAGAGAATCAACAGCTT
CCCCAGGACGTTCGAGTGCACGCGAAAGGACGCACTATCTCGAAACATGA
ACCGCATGAGCCAGGTGCATGGCGAACGGCATTTTGGATTCATTCCTCGA
GGTTTCGTGCTGCCAGCCGGACGTTCGAGTGCACGCGAAAGGACGCACTA
TCTCGAAACATGAACCGCATGAGCCAGGTGCATGGCGAACGGCATTTTGG
ATTCATTCCTCGAGGTTTCGTGCTGCCAGCCGAGAGGGAGGAATTACGCC
AAGCAATGCTGGAGACGGCGGAATCTGAGGCTTGGATAGTAAAGCCGGCT
AGCTCGGCGTGCGGGCGTGGAATTTTCGTCACGAGGCGTTTTTCCGACAT
GCCATAGAGGGAGGAATTACGCCAAGCAATGCTGGAGACGGCGGAATCTG
AGGCTTGGATAGTAAAGCCGGCTAGCTCGGCGTGCGGGCGTGGAATTTTC
GTCACGAGGCGTTTTTCCGACATGCCATCGTGTACCAGGTCAGAGGGGAA
TTGGATCGCTCAGCGTTACGTTGCGAACCCTCTTCTACTAGATGGCCTCA
AGTTTGATCTCAGACTCTACGTCGCTGTCACATCGTTCCGACCTCTTAGC
GTGTACCAGGTCAGAGGGGAATTGGATCGCTCAGCGTTACGTTGCGAACC
CTCTTCTACTAGATGGCCTCAAGTTTGATCTCAGACTCTACGTCGCTGTC
ACATCGTTCCGACCTCTTAGGGTGTATCTACATGAAGAGGGACTCTGTCG
CTTAGCCACAGAGCCTTACAGCGACGATACCTCAAGCTTCAGCAACAGAT
TTATGCACCTTACCAACTACAGCATCAACAAGAAGAATGGTCGCTACGTG
CCTGGATCAGCGGGGTACGCTTATTAGGGTGTATCTACATGAAGAGGGAC
TCTGTCGCTTAGCCACAGAGCCTTACAGCGACGATACCTCAAGCTTCAGC
AACAGATTTATGCACCTTACCAACTACAGCATCAACAAGAAGAATGGTCG
CTACGTGCCTGGATCAGCGGGGTACGCTTATTAG
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