mRNA_H-paniculata_contig873.16659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig873.16659.1
Unique NamemRNA_H-paniculata_contig873.16659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig873.16659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig873contigH-paniculata_contig873:27722..28296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig873.16659.1prot_H-paniculata_contig873.16659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig873 27738..28040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.225907-UTR-H-paniculata_contig873:27721..277371622931095.225907-UTR-H-paniculata_contig873:27721..27737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 27722..27737 +
1691481587.8477356-UTR-H-paniculata_contig873:27721..277371691481587.8477356-UTR-H-paniculata_contig873:27721..27737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 27722..27737 +
1622931095.257979-UTR-H-paniculata_contig873:28040..280621622931095.257979-UTR-H-paniculata_contig873:28040..28062Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 28041..28062 +
1691481587.8662634-UTR-H-paniculata_contig873:28040..280621691481587.8662634-UTR-H-paniculata_contig873:28040..28062Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 28041..28062 +
1622931095.2870276-UTR-H-paniculata_contig873:28079..282961622931095.2870276-UTR-H-paniculata_contig873:28079..28296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 28080..28296 +
1691481587.8740575-UTR-H-paniculata_contig873:28079..282961691481587.8740575-UTR-H-paniculata_contig873:28079..28296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig873 28080..28296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.243738-CDS-H-paniculata_contig873:27737..280401622931095.243738-CDS-H-paniculata_contig873:27737..28040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig873 27738..28040 +
1691481587.8583298-CDS-H-paniculata_contig873:27737..280401691481587.8583298-CDS-H-paniculata_contig873:27737..28040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig873 27738..28040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig873.16659.1

>prot_H-paniculata_contig873.16659.1 ID=prot_H-paniculata_contig873.16659.1|Name=mRNA_H-paniculata_contig873.16659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MKKKRCACAGPFFDTSERRRVYLSSSHIGTFGFVCTYLVHDLECPDASQT
TAGKVPVIQTLTPIHEPRASWSRSLERCAASRRGTNLGARFVEESNCSSQ
*
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mRNA from alignment at H-paniculata_contig873:27722..28296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig873.16659.1 ID=mRNA_H-paniculata_contig873.16659.1|Name=mRNA_H-paniculata_contig873.16659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig873:27722..28296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCGGCCATCAAGAATGAAGAAGAAGCGCTGCGCGTGTGCAGGGCCCT
TCTTCGACACGAGTGAGAGGAGAAGGGTTTACCTCAGTTCGTCACATATA
GGAACATTCGGTTTCGTTTGTACATATTTGGTTCACGATTTAGAGTGCCC
GGATGCAAGCCAAACGACGGCTGGAAAAGTACCCGTAATCCAGACTCTGA
CCCCGATCCATGAGCCCAGAGCGAGTTGGTCAAGGTCACTCGAACGCTGT
GCCGCTTCGCGGCGCGGCACCAACCTAGGAGCCAGATTCGTGGAGGAATC
GAACTGTAGCTCACAGTAAAACCAAGTGAGACACGAAAAACGTCATGATG
ACTACCAGAAAAGCCTTTGATATCGTTCCCCGCTTTTTTTTTTTTATAAA
CTTGATTTTCTCGATAACGACGTCGTTTGCCCATAACACCAATAACAGTA
TCGTTGGAAAGGTTTCGTTGGGATCTTCTGATAGACCCTATGTTTCGGCA
GTTGAGGCTCTTCCTTGCTTATCGAGAACGTCTTGGGGGGTTGGAAAATA
ATGCTAGGGGGTGCGATATCACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig873:27722..28296+

>mRNA_H-paniculata_contig873.16659.1 ID=mRNA_H-paniculata_contig873.16659.1|Name=mRNA_H-paniculata_contig873.16659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig873:27722..28296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGAAGCGCTGCGCGTGTGCAGGGCCCTTCTTCGACACGAGTGA
GAGGAGAAGGGTTTACCTCAGTTCGTCACATATAGGAACATTCGGTTTCG
TTTGTACATATTTGGTTCACGATTTAGAGTGCCCGGATGCAAGCCAAACG
ACGGCTGGAAAAGTACCCGTAATCCAGACTCTGACCCCGATCCATGAGCC
CAGAGCGAGTTGGTCAAGGTCACTCGAACGCTGTGCCGCTTCGCGGCGCG
GCACCAACCTAGGAGCCAGATTCGTGGAGGAATCGAACTGTAGCTCACAG
TAAATGAAGAAGAAGCGCTGCGCGTGTGCAGGGCCCTTCTTCGACACGAG
TGAGAGGAGAAGGGTTTACCTCAGTTCGTCACATATAGGAACATTCGGTT
TCGTTTGTACATATTTGGTTCACGATTTAGAGTGCCCGGATGCAAGCCAA
ACGACGGCTGGAAAAGTACCCGTAATCCAGACTCTGACCCCGATCCATGA
GCCCAGAGCGAGTTGGTCAAGGTCACTCGAACGCTGTGCCGCTTCGCGGC
GCGGCACCAACCTAGGAGCCAGATTCGTGGAGGAATCGAACTGTAGCTCA
CAGTAA
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