mRNA_H-paniculata_contig873.16658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A6H5K3N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3N2_9PHAE) HSP 1 Score: 413 bits (1061), Expect = 6.210e-134 Identity = 256/457 (56.02%), Postives = 299/457 (65.43%), Query Frame = 1
Query: 130 QNAALLAAVPTVLAV--ALLGYHMGRLSVQAQQKDGEAGGKARRQRSTGGMQHHRPLHQLIYEATGRGFGVVKRVYIVPGGGPGSAKDGGYPPWTAQRVAKALQRYNPKEAETTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFARMAIEALLDVAFRSGDSLNELHAIRP----APAA--APPVLPPSPRNLPYAGSALKGLKVGNRGETGSTTFPA----SRQDYFRKKSCLALIPNTDEELDRETKNRDIFCAVAVSMSVVKVASLPLSSPGEEKAPLLPAARAGEAYEGGEIRQWMFKYKAKRAKARRGPLNVTVFVSDFHAERMDTVFQWVFGLEPSLLTNLSTTVTTVSIDTPVEMWARGPEQRQARVAHEREATEQARIRATEIRTVEEMRAFMTLGAHKGYFNLSHGRYKASAGGGWGGAA 1464
Q++ L+ VP AV AL+GY G ++ + ++++ +A G MQHH L +LI ++TGRGFG VKRVY+VPGGGPGS KD GYP WTAQRVAKALQR++ K +TTAFLALGAGSMNAPSARGGNGHVIFESTRIAEEL R MA+EA+LD++FR GD NE HA P APAA AP VL SPR LPY GSA+ + G GE S T A F + A L +ETK D GE+ LPAARAGEAY GGE+R+WM+ +K K+A+ARRGP+N+TVFVSDFHAERMD VFQWVFGLEPSLL TTVTTVSI+TPVEMWARG EQR+AR AHEREA EQAR RA EIRTVEE RAFM LG H+GYF+L+HGRY+AS GGGWGGA+
Sbjct: 10 QHSLLVLVVPLGCAVCAALVGYQAGAVAWRHKREEDQAKG----------MQHHHALRRLISDSTGRGFGTVKRVYVVPGGGPGSVKDAGYPSWTAQRVAKALQRFDMKYGDTTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELVR-------------------------MAVEAMLDMSFRHGDRANE-HAAPPXXXXAPAAGVAPSVL--SPRKLPYPGSAVV-TESGGTGEGESETAAALGGVEEPGLFSARREAAAAAARGLTL-KETKRADAXXXXXXXXXXXXXXXXXRKGGGEK----LPAARAGEAYGGGEMRKWMYDWKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRG-KTTVTTVSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMMLGGHRGYFDLTHGRYQASPGGGWGGAS 421
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A061RFM9_9CHLO (DUF218 domain-containing protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RFM9_9CHLO) HSP 1 Score: 111 bits (277), Expect = 3.660e-23 Identity = 58/127 (45.67%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 292 LHQLIYEATGRGFGVVKRVYIVPGGGPGSAKDGGYPPWTAQRVAKALQRYNPKEAETT--AFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFARMAIEALL 666
L + I E G VK++ +VPGGGPGS +D G PPWT R AL+ Y +A A AGSMNAP +G + H++FES+ IA L GVP ++ D+A WDTVGNAW RM ++ LL
Sbjct: 34 LRRQIQEHVGSDLSQVKKLIVVPGGGPGSPEDKGVPPWTVSRSDAALELYRSCKATGVRCAVFCTSAGSMNAPQPKGEDSHILFESSLIASLLHSKGVPEEDLLCDFAPWDTVGNAWSVRMVVQGLL 160
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A661WR31_9CHLR (DUF218 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661WR31_9CHLR) HSP 1 Score: 65.5 bits (158), Expect = 2.910e-8 Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 352 IVPGGGPGSAKDGGYPPWTAQRVAKALQRYNPKEAETTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFARM 648
++PGGG DG P WT R+ KAL + E + L G+++ P G G+ +FES + AE L G+ P I+ + +S+DT+GNA+FAR+
Sbjct: 10 VIPGGG--LLGDGSLPEWTRARLEKALAIHQHAEW----IITLSGGTVHKPPPIDGEGYPVFESRKAAEFLIESGIHPRRILTETSSYDTIGNAYFARV 102
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A7C8AHT6_9BACT (YdcF family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8AHT6_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.420e-6 Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 352 IVPGGGPGSAKDGGYPPWTAQRVAKALQRYNPKEAETTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFARM 648
++PGGG + G P WT +R+ KA++ N + + L AG+++ P G+ +FE + A+ L + G+ P I+ + +S+DT+GNA+FAR+
Sbjct: 9 LIPGGG--LLEGGSLPVWTKRRLDKAIEIQNDEH-----IITLSAGTIHKPPQLNRRGYPMFECVQAADYLMKKGLSPRKILTERSSYDTLGNAYFARV 100
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A7T5UM08_9ARCH (YdcF family protein n=1 Tax=Candidatus Aenigmarchaeota archaeon TaxID=2093792 RepID=A0A7T5UM08_9ARCH) HSP 1 Score: 57.0 bits (136), Expect = 2.220e-5 Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1
Query: 367 GPGSAKDGGYPPWTAQRVAKALQRYNPKEAETTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFARM 648
G G DGG P WT R+ +AL+ Y + + LG S++ P+ + +FE+ A+ LTR GV P ++ +AS+DT+G A+F R+
Sbjct: 12 GGGLTSDGGLPKWTVARLEEALKLYTGQY-----VVVLGGMSVHVPAVLDADKFPVFEAFVEADYLTRRGVDPLRVLKQWASFDTIGEAFFTRV 100
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Match: A0A8J7JZC0_9GAMM (YdcF family protein n=1 Tax=Pontibacterium sp. N1Y112 TaxID=2781979 RepID=A0A8J7JZC0_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 7.260e-5 Identity = 33/98 (33.67%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 352 IVPGGGPGSAKDGGYPPWTAQRVAKALQRYNPKEAETTAFLALGAGSMNAPSARGGNGHVIFESTRIAEELTRGGVPPGSIIADYASWDTVGNAWFAR 645
++PGGG + DG P WT +R+ AL + ++ L AG+ + P G I+ES A+ L G+P ++ + +S+DT+GNA+FAR
Sbjct: 11 MIPGGGVSA--DGQLPAWTLRRLEAALSSEPARY-----YICLSAGTFHKPLPSDREGFPIYESVVAAQYLREAGIPEERLLFETSSYDTLGNAYFAR 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig873.16658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig873.16658.1 >prot_H-paniculata_contig873.16658.1 ID=prot_H-paniculata_contig873.16658.1|Name=mRNA_H-paniculata_contig873.16658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp MRPSAQNAALLAAVPTVLAVALLGYHMGRLSVQAQQKDGEAGGKARRQRSback to top mRNA from alignment at H-paniculata_contig873:10087..21173- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig873.16658.1 ID=mRNA_H-paniculata_contig873.16658.1|Name=mRNA_H-paniculata_contig873.16658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11087bp|location=Sequence derived from alignment at H-paniculata_contig873:10087..21173- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig873:10087..21173- >mRNA_H-paniculata_contig873.16658.1 ID=mRNA_H-paniculata_contig873.16658.1|Name=mRNA_H-paniculata_contig873.16658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig873:10087..21173- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |