mRNA_H-paniculata_contig8711.16648.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8711.16648.1
Unique NamemRNA_H-paniculata_contig8711.16648.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8711.16648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8711contigH-paniculata_contig8711:3745..5308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size237
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8711.16648.1prot_H-paniculata_contig8711.16648.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8711 3745..5303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.9293578-CDS-H-paniculata_contig8711:3744..39551622931093.9293578-CDS-H-paniculata_contig8711:3744..3955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8711 3745..3955 +
1691481587.1927614-CDS-H-paniculata_contig8711:3744..39551691481587.1927614-CDS-H-paniculata_contig8711:3744..3955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8711 3745..3955 +
1622931093.945842-CDS-H-paniculata_contig8711:5277..53031622931093.945842-CDS-H-paniculata_contig8711:5277..5303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8711 5278..5303 +
1691481587.2023976-CDS-H-paniculata_contig8711:5277..53031691481587.2023976-CDS-H-paniculata_contig8711:5277..5303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8711 5278..5303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.96185-UTR-H-paniculata_contig8711:5303..53081622931093.96185-UTR-H-paniculata_contig8711:5303..5308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8711 5304..5308 +
1691481587.2134986-UTR-H-paniculata_contig8711:5303..53081691481587.2134986-UTR-H-paniculata_contig8711:5303..5308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8711 5304..5308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8711.16648.1

>prot_H-paniculata_contig8711.16648.1 ID=prot_H-paniculata_contig8711.16648.1|Name=mRNA_H-paniculata_contig8711.16648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
FFGRVSNSQDVECSQAPSSGPDGRKRKTREEANTEYDEDASSSTPAAGKF
TSGIDLPTLSVVSLRLMKGAGSATSGSC*
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mRNA from alignment at H-paniculata_contig8711:3745..5308+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8711.16648.1 ID=mRNA_H-paniculata_contig8711.16648.1|Name=mRNA_H-paniculata_contig8711.16648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1564bp|location=Sequence derived from alignment at H-paniculata_contig8711:3745..5308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCGGCAGGGTAAGTAATAGTCAGGATGTCGAATGCAGCCAAGCACC
TTCAAGTGGTCCTGACGGTAGGAAACGGAAGACGAGGGAGGAGGCGAACA
CCGAATACGATGAAGATGCGAGTTCAAGTACGCCCGCGGCAGGAAAATTT
ACGTCTGGGATTGACTTACCAACTTTATCGGTGGTGTCACTGCGGCTGAT
GAAGGGCGCAGGTGAGCCTTCAAGCAGACGGGAGTTGAAGGGACGTCGAC
GCGATTACTATGACCAGCGTGTGATGGTATCTGCGCAGAGCGAAGAGCAG
ATTAAGCGGCAGACAGTATCGGACACAACACGCGAGAATATGCTGATTTG
CATGGAGAGCATCTCGACCAGCGCAAGTGCAATAGCGATAGCGGTAGGGG
AGTAAGTGATTCTTGACAATAGAAAAACGACAATAACGGAATTGGAAGTC
AACGTCAAATCGTGCCGGGAAGAACTCCACTTATTGCAGGAAGTAGGGTC
ACCCGATGCCGCTGAAGAGGCTGTCAACAGCCTAAGAGAGGCATTGAAGG
CACTCCGCGCAGCGGTGAAGCCTGCTGAGATGACAGCTGTACGAAGCGGG
CGTGAAGGGTCGGGGGTAGGTGGTACCGGTGGTAACAGGCCAACAGGCGA
TGAAGCGGCGGCCTCTAGGAAGGATGGCTGTGGACCTGAAAGGGGCGGAG
CTGTTGGAGGGCACCACGAAAGCGCAGCCTCATTAGGCAAAGATGATTGC
ATCATAACTGTCATTTGAGTGTGCGACATGATGCCTGTCAATACTGGAGA
TGACTCAAATGCTTTTTTGTCGGGGGAGGGGGTTAAACGATGTGTAGATA
TGTTTGAAGGAATGTTGATTTAAGTCGTGGTTTATCGAGAGATAATGTGC
GTGGTAGACCGTACACTTCTTGGTGTGATTCGTTTTGTGTTGGTCATGGG
ACATTTCTCTGCTGCATTATTTTAGAGGTGTCAGGGTGGTTTGCATTTTA
CATTATCAATTTTTATGCGTGACGCATCGTTCGACATAACAATCGTGCCA
CACACTTTGTGTAGAAAAAAACATTAAAACGTCAAGCATCGTCATGGCGG
CGGTTGAACTCCTTTCCCATGAAGTCACCACCCGACAGCTAGAGGGGTGA
ATGAACAGTGCAACACTCTTCGCTCGAATTCACGACCACGTCAACGTTCC
CTTTAATACAGTATATAACATAGGCTTGACGGCATTGTTACCTCTCGAAA
CTGTGCCGAGCTTGCAATATCAACGACAAAGGCTTGCGAGCGTAAACCAA
TCAAAGCAAAAACTCTTCCTGTATTCTCCACGATTCAACCTCGATTTCCT
CCCGTATTCTGCCGGCGATGACTACAACGCCTACCTAGCAAGGCACATGA
TGTCATTTTTCGTCCTACGGTATGAGAAATGTGCGATCAAATCCTTCTTC
AGGACCTTGTGGTCTGACTCCGCTTCATGCCCGTCGTCCGCCAAAGTTGC
GCCTGAACCCTACCCACCCGTGGTCTGTCTCAGGCTCAGCAACCTCAGGG
TCATGTTGACCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig8711:3745..5308+

>mRNA_H-paniculata_contig8711.16648.1 ID=mRNA_H-paniculata_contig8711.16648.1|Name=mRNA_H-paniculata_contig8711.16648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig8711:3745..5308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCGGCAGGGTAAGTAATAGTCAGGATGTCGAATGCAGCCAAGCACC
TTCAAGTGGTCCTGACGGTAGGAAACGGAAGACGAGGGAGGAGGCGAACA
CCGAATACGATGAAGATGCGAGTTCAAGTACGCCCGCGGCAGGAAAATTT
ACGTCTGGGATTGACTTACCAACTTTATCGGTGGTGTCACTGCGGCTGAT
GAAGGGCGCAGTTCTTCGGCAGGGTAAGTAATAGTCAGGATGTCGAATGC
AGCCAAGCACCTTCAAGTGGTCCTGACGGTAGGAAACGGAAGACGAGGGA
GGAGGCGAACACCGAATACGATGAAGATGCGAGTTCAAGTACGCCCGCGG
CAGGAAAATTTACGTCTGGGATTGACTTACCAACTTTATCGGTGGTGTCA
CTGCGGCTGATGAAGGGCGCAGGCTCAGCAACCTCAGGGTCATGTTGAGC
TCAGCAACCTCAGGGTCATGTTGA
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