mRNA_H-paniculata_contig87.16633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig87.16633.1
Unique NamemRNA_H-paniculata_contig87.16633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE)

HSP 1 Score: 459 bits (1180), Expect = 1.470e-150
Identity = 230/467 (49.25%), Postives = 302/467 (64.67%), Query Frame = 2
Query:   83 TMNATPVS--SAQSDPATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIMPYAMVTDATGYLQFLQDVFGATPSMEPMKQSNGKIMWSQVSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
            T +ATP S    +  P T RG++V ++V+S DK  + M K   A+EYFR  D + KIMHLA+D+GGV++Y+EE+G+++  GA    H RLHLN ++P  V  KLV  G+K + +  +QFWGA +GV++DPFG IWSVS++TN IED+PKEL  KI+P+  V D + Y+ FL D  GA     P K   GKIM +++ INGG   +GD C  DAS+ T A +TI + + K +A  + ++FK  GG +L   +  FWGQVWGRC D FGQ   +CE   G PP+ EDMA D+++G KY       +ED+P +YC G + T  A   A++  I   LPAA A A   GL + GPP S YY+WD   GG T FT GP VAG  ++   ++   DD GLG R+ GG KCVT  H GPYDEL KCYEAT EW+ AKGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct:    5 TGSATPASPCDGRKHPPTRRGIIVDVMVESADKFVDFMGKAAKAKEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASK-TEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPAAFAGAAAAGLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGGASALMKDVNGDDIGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 470          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 6.260e-137
Identity = 204/410 (49.76%), Postives = 270/410 (65.85%), Query Frame = 2
Query:  248 MHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIMPYAMVTDATGYLQFLQDVFGATPSMEPMKQSNGKIMWSQVSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
            MHLA+D+GGV++Y+EE+G+++  GA    H RLHLN ++P  V  KLV  G+K + +  +QFWGA +GV++DPFG IWSVS++TN IED+PK+L  KI+P+  V D + Y+ F+ D  GA     P K   GKIM +++ INGG   VGD C  DAS+ T A +TI H + K +A  + ++FK  GG +L   +  FWGQVWGRCKD FGQ WG+CE  +G   + EDMA D+++G KY      ++ED+P +YC G + T  A   A++      LPAA A A   GL + GPP S YY+WDP  GG T FT GP VAG  ++   ++   DD GLG R+ GG KCVT  H GPYD+L KCY+AT EW+  KGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct:    1 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASK-TEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPAAFAGAAAAGLAMAGPPASAYYTWDPSPGGTTKFTCGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDQLMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 409          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 4.720e-85
Identity = 137/272 (50.37%), Postives = 177/272 (65.07%), Query Frame = 2
Query:  659 VSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
            + INGG   +GD C  DAS+ T A +T+ + + K +A  + ++FK  GG +L   +  FWGQVWGRCKD FGQ WG+CE   G  P+ EDMA D+++G KY       +ED+P +YC G + T  A + A++   +  LPAA A A   GL + GPP S +Y+WDP  GG T FT+GP VAG  ++   ++   DD GLG R+ GG KCVT  H GPYDEL KCYEAT EW+ AKGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct:    1 MKINGGIVMLGDHCSKDASK-TEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPAAFAGAAAAGLAMAGPPASAFYTWDPSPGGTTKFTSGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 271          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.340e-36
Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 2
Query:   83 TMNATPV--SSAQSDPATLRGVVVSLVVDSTDKVKETMNKTIGAR-----------------------------------EYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKI 538
            T +ATP   S  +  P T RG++V+++V+S DK  + M KT  A+                                   EYFR  D + KIMHLA+D+GGV++Y+EE+G+++  GA    HARLHLN ++P  V  KLV  G+K + +  +QFWGA +GV++DPFG IWSVS++TN IED+PKEL  KI
Sbjct:    5 TESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKIWRLTDGGGDALSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 194          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A0F2QEV7_9PROT (VOC domain-containing protein n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A0F2QEV7_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 2
Query:  122 PATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGG-VSMYLEEIGHRVYKGADK---AHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIM 541
            P    GVV  LV     K  +       A E  R    + +++H ++ +   + M ++E    V +  +        +HL+V + K V ++ V+AG+K I   ++QFWG +YG+ EDPFG  WS++          + L+  +M
Sbjct:    6 PGEGHGVVPHLVCKDAAKAIDFYKAAFDAEEMIRLPGPDGRLVHASVLINSNMVMLVDEFPDMVVQSPETLGGTPVTIHLSVTDAKGVVDRAVKAGAKLIMPVERQFWGDLYGMVEDPFGHKWSIATPGENAPRTSEALQEAMM 149          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: V9GF54_9BACL (PhnB protein n=1 Tax=Paenibacillus sp. JCM 10914 TaxID=1236974 RepID=V9GF54_9BACL)

HSP 1 Score: 63.2 bits (152), Expect = 3.650e-8
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  125 ATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVS 487
            A L G V+S+         +T  +  G +E  +     +K+MHL+L  GG+ MY+ +   +     +  H  L    ++    A   + AG K I     QFWGA++GV ED +GV+W V+
Sbjct:   22 AALGGEVISV---------QTHGEIPGTKEEMK-----DKVMHLSLVAGGIPMYMADTVFQKLDRGNGIHLSLSFESDDEAHGAFDRLAAGGKVIDPLKIQFWGALFGVLEDKYGVLWQVT 128          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A5S5BM94_9BACL (PhnB protein n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BM94_9BACL)

HSP 1 Score: 59.7 bits (143), Expect = 6.200e-7
Identity = 26/86 (30.23%), Postives = 43/86 (50.00%), Query Frame = 2
Query:  239 NKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTT 496
            +K++HLA   GGV+ ++ +            H  L    +     A   + AG + +    +QFWG+++GV ED FGV+W V+  T
Sbjct:   46 DKVLHLAFVAGGVTFFMSDSPFNAVTRGSGMHLSLEFATDAEAHDAFDKLSAGGRVVDPLKQQFWGSLFGVLEDKFGVLWQVTTPT 131          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: UPI000F83A009 (GyrI-like domain-containing protein n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F83A009)

HSP 1 Score: 59.7 bits (143), Expect = 9.490e-7
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 2
Query: 1115 GPPLSGYYSWDPKE-GGETSFTTGPMVAGDSSTEEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPI 1444
            GPP + YY+ D ++   E  F     + G    +    ++T  G       K V+  H+GPY ++   Y A  +WI   GYE      E+Y NDP  T P KL TK+ +PI
Sbjct:   51 GPPFAIYYNMDMQDLDVEFGFPISTNLTG---RDNIHSNETPSG-------KSVSCLHIGPYSDVESTYNALFKWIKDSGYEATGVAYEMYLNDPDQTPPEKLETKIFLPI 151          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: UPI0010C0C5DE (VOC family protein n=1 Tax=Paenibacillus sp. SY21-1 TaxID=2562315 RepID=UPI0010C0C5DE)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-6
Identity = 26/90 (28.89%), Postives = 46/90 (51.11%), Query Frame = 2
Query:  239 NKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIE 508
            +K+MH++L  GG+S ++ +   +  +  +  H  L  + E         +  G K +    KQFWG+++G+ ED FGV+W V+      E
Sbjct:   46 DKVMHMSLIAGGISFFMSDSPFQPIERGNGMHLSLEFDDEAEAYSRFDKLAEGGKVLDALKKQFWGSLFGLVEDKFGVLWQVTTEAKPAE 135          
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A1R1AUM0_PAELA (3-dmu-9_3-mt domain-containing protein n=14 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1AUM0_PAELA)

HSP 1 Score: 58.5 bits (140), Expect = 1.500e-6
Identity = 25/86 (29.07%), Postives = 45/86 (52.33%), Query Frame = 2
Query:  230 DANNKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVS 487
            +  +K+MHL+L  GG+ +++ +   +  +  +  H  L    +     A   +  G K +     QFWGA++G+ ED FGV+W V+
Sbjct:   43 ELKDKVMHLSLVAGGIPIFMSDSIFQTLERGNGIHLSLSFESDAEAHEAFDRLAEGGKVLDPLKTQFWGALFGLLEDKFGVLWQVT 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L888_9PHAE1.470e-15049.25VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JNL3_9PHAE6.260e-13749.76AraC_E_bind domain-containing protein n=2 Tax=Ecto... [more]
D8LJ97_ECTSI4.720e-8550.37AraC family transcriptional regulator n=1 Tax=Ecto... [more]
D8LJ96_ECTSI4.340e-3642.11Glyoxalase family protein (Partial) (Fragment) n=1... [more]
A0A0F2QEV7_9PROT1.090e-927.08VOC domain-containing protein n=2 Tax=Hyphomonadac... [more]
V9GF54_9BACL3.650e-830.58PhnB protein n=1 Tax=Paenibacillus sp. JCM 10914 T... [more]
A0A5S5BM94_9BACL6.200e-730.23PhnB protein n=1 Tax=Paenibacillus methanolicus Ta... [more]
UPI000F83A0099.490e-733.33GyrI-like domain-containing protein n=1 Tax=Sulfur... [more]
UPI0010C0C5DE1.120e-628.89VOC family protein n=1 Tax=Paenibacillus sp. SY21-... [more]
A0A1R1AUM0_PAELA1.500e-629.073-dmu-9_3-mt domain-containing protein n=14 Tax=Pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig87contigH-paniculata_contig87:12800..19700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.2
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog469383.Cwoe_4179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial transcription activator, effector binding domain
EggNOG OGs2GMG7@201174,4CRYM@84995,COG0789@1,COG0789@2,COG4978@1,COG4978@2
COG Functional cat.KT
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
Exons8
Model size2476
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig87.16633.1prot_H-paniculata_contig87.16633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig87 13846..19669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.6348743-UTR-H-paniculata_contig87:12799..134561622931091.6348743-UTR-H-paniculata_contig87:12799..13456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 12800..13456 -
1691481585.9829516-UTR-H-paniculata_contig87:12799..134561691481585.9829516-UTR-H-paniculata_contig87:12799..13456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 12800..13456 -
1622931091.6477118-UTR-H-paniculata_contig87:13482..138451622931091.6477118-UTR-H-paniculata_contig87:13482..13845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 13483..13845 -
1691481585.9923618-UTR-H-paniculata_contig87:13482..138451691481585.9923618-UTR-H-paniculata_contig87:13482..13845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 13483..13845 -
1622931091.7751594-UTR-H-paniculata_contig87:19669..197001622931091.7751594-UTR-H-paniculata_contig87:19669..19700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 19670..19700 -
1691481586.0714877-UTR-H-paniculata_contig87:19669..197001691481586.0714877-UTR-H-paniculata_contig87:19669..19700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 19670..19700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.6622736-CDS-H-paniculata_contig87:13845..142891622931091.6622736-CDS-H-paniculata_contig87:13845..14289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 13846..14289 -
1691481586.0022147-CDS-H-paniculata_contig87:13845..142891691481586.0022147-CDS-H-paniculata_contig87:13845..14289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 13846..14289 -
1622931091.67627-CDS-H-paniculata_contig87:14626..147991622931091.67627-CDS-H-paniculata_contig87:14626..14799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 14627..14799 -
1691481586.0122733-CDS-H-paniculata_contig87:14626..147991691481586.0122733-CDS-H-paniculata_contig87:14626..14799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 14627..14799 -
1622931091.6933684-CDS-H-paniculata_contig87:15355..155511622931091.6933684-CDS-H-paniculata_contig87:15355..15551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 15356..15551 -
1691481586.0216115-CDS-H-paniculata_contig87:15355..155511691481586.0216115-CDS-H-paniculata_contig87:15355..15551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 15356..15551 -
1622931091.7123365-CDS-H-paniculata_contig87:15816..160181622931091.7123365-CDS-H-paniculata_contig87:15816..16018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 15817..16018 -
1691481586.0311341-CDS-H-paniculata_contig87:15816..160181691481586.0311341-CDS-H-paniculata_contig87:15816..16018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 15817..16018 -
1622931091.7290068-CDS-H-paniculata_contig87:16890..170031622931091.7290068-CDS-H-paniculata_contig87:16890..17003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 16891..17003 -
1691481586.0409687-CDS-H-paniculata_contig87:16890..170031691481586.0409687-CDS-H-paniculata_contig87:16890..17003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 16891..17003 -
1622931091.7460017-CDS-H-paniculata_contig87:18223..184301622931091.7460017-CDS-H-paniculata_contig87:18223..18430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 18224..18430 -
1691481586.0502865-CDS-H-paniculata_contig87:18223..184301691481586.0502865-CDS-H-paniculata_contig87:18223..18430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 18224..18430 -
1622931091.7615058-CDS-H-paniculata_contig87:19579..196691622931091.7615058-CDS-H-paniculata_contig87:19579..19669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 19580..19669 -
1691481586.0632772-CDS-H-paniculata_contig87:19579..196691691481586.0632772-CDS-H-paniculata_contig87:19579..19669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 19580..19669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig87.16633.1

>prot_H-paniculata_contig87.16633.1 ID=prot_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp
MASFDTKAEGSIAEQEATMNATPVSSAQSDPATLRGVVVSLVVDSTDKVK
ETMNKTIGAREYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGADKA
HARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWS
VSDTTNQIEDIPKELESKIMPYAMVTDATGYLQFLQDVFGATPSMEPMKQ
SNGKIMWSQVSINGGNFAVGDQCDASEGTGAEITIIHTIPKGQAETVCQA
FKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAI
DVKLGEKYKWKWSWSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAV
AEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSSTEEAAKDD
TGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEI
YENDPKDTEPAKLRTKVSVPIVLK*
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mRNA from alignment at H-paniculata_contig87:12800..19700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig87.16633.1 ID=mRNA_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6901bp|location=Sequence derived from alignment at H-paniculata_contig87:12800..19700- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTTGGATCGCGAATACCAACTATCATCATGGCTTCTTTCGACACAA AAGCCGAGGGCTCTATCGCTGAACAGGAAGCGACCATGAACGCCACCCCA GTGAGCTCTGCACAAAGCGACGTAAGATATCACTCACTCCCAAATATATT GTTTTGGATTGCGCCATCCCCCACTGCAACAGTAAGCAGGTATATGCTTG GCTCTCACAGTTGTCCTGAGGATAATCCTCCGGCGCAACTCCTAGCGGTC GTTACCCATGGGACCAGGGGCGTTGAACCGGCTTTTCCATTCGACACCGA CCTGACGGAACTATTATTGCAGTAGGCGTTTTGCCCAGGATCGCAAGTAG GACTTGTTTTGTGCCCTGAGTGCAAAATGTATCATGTTCTGGTGGGTGAG AGGACAGCCTCATGGATGACCTAGTCGGGCTTAACAGTACACAAAACAGC AGAAAATGAAAAATATGGTACAGCATATTTTGAACAGTCAGAAGAAAAAA TAACTTGACTATCATATCTGTTGAAGCTAAAGCTTTGCAACCTCCACCCC TTCGACAAGGTTCGCGCGCCAATAATTAAAACTTGGTCGGTATTGGAACG ACTTGCACAGTCCTCCTGGTACTCCTTGCTTGGGAGTGCTACATGTTTTT CCGGAATCGGAGGGACAAGTCACCTCTGCATGTTCGTTTCGTGCCTCCCA CGTGAGCTACCGCATGTGTGTTGCAAAGCCTTGGCATTTTTTATTATGCC AGCGCGCCAAAATACGAGTACAAATATAACAAAATTTGACAAATTATGAA AATCCGCAACACCCGAGTACTGTACAGTCCTTGCTAAGATAACAGTTTAT ATCCTTGGAGTATCATAAATACATCGTAAATGCGCCAATGTGTCATTGCC GTGTCCTCATGTCATGGGCATGGGTTGATAGCACCAACGTAAATCTGGGA CTACTGTAAACCCAGCGGAGCTCTGGTAATGTCACTGTCGCACGATATTT GCGTATTGACGAGGCCCGCGTGCCAAAATATCAAACTTCAAAATGAATCT TCAACATGGACTGAAAATACGTGCATAATCTCCGTTGTCTGGACCTACTC ATCTAGTAGATAAGCAGGCACTCACGCAAGCGTATGAGGCCACAAGAACA TGAGCGGACACCCGGGAGAGACGTGGCCGTATTAATGCCCATCAATGAAC CTTTTCCTTCATGTGTTGCCGGTATGCTGCCTTGGCCCGACTCTCACGTG CCCCATGGTCGTATTCTTAGCCAGCTACTCTCCGTGGTGTCGTGGTGAGC CTTGTCGTGGACAGCACAGACAAGGTTAAGGAAACTATGAACAAGACTAT AGGGGCAAGGGAGTATTTCCGGGCTTCCGACGCCAACAACAAGATTATGC ATCTCGCTTTGGACGTCGGCGGTGTGTCGATGTACTTGGAGGAGATCGGG CACCGCGTGTACAAGGGAGCCGATAAGGTAAGGTCTTTTCTTTCAGAAAG AACCTAAAATTTTCTGTGCCGCGGTGTAAGTGTCAAAATCCGAACTAAAG CCCTTGTCCGACCTTCCCTCACGTCCCCTCCACAAAATATTTTGGGCAGT TGGCTTTTGTACAGACCAACTTTGAGAGGTCGCGACTGGTTTTGATTTGT GTTGAAATGGTTCAGGAAGAGTTTCGGCGGCGTTCAGGTCGGAAATTTAG GGCATGTTCGCGATTAGCAAAGGAACACATAGCATCGTTGTTGAACCTTC CGAATTACATCGAACTCTCTGCCAGAATGTGCCTTCCCCCCGCCGACCAA GAAAAAACTATGACCTCTCAGCCCCCAAAACAACCAAAAACATTTGTTGA CCTGTCTATTTAACCTGATTTTGAAGAGAGAACGGTCATCATCAATACAA CACATGCATTTACATGTTGGTTTAGAAAAGGTGGCGAAGCCATGCCCAGG GAAGGGAGGCGCTAGGTCGAATATAATAGAGTTGACCTTTGGAACGATCA GCAGCATAGTGGCTATGTACATAGCAACCAAGCGCAACCATGGGCCCAAC GTGTCCACCGAAGGTCGTGAATTGCAAACGATTGACAAAGGAATGCGGTG CTGGCCATGGTACGAGTGATAGCTTCACTCCCCCCGAAACAACAGAACGT ATATCGGACTGTCGGTCTTGATCAACTGAGCATCGTGCAGTTGCTTTTGG TAGAATCGTCCCAGATATGAAGAGCAGGTGTTCCGCGTGCACACGAACGC AAGCCAGACGCGGACAAAGAGGCAGAAATAGCACTTTTTTCGATTACAAA TGAACGTGATATGCTGTACCTCCCCCAAAACAGAAGGGATTCGCGCGAAA CAAAAGCTGGCTTGTCCAGCAAGGTCTATGGTCGAGGTAGTGCGCATGTA CTCTGTATCCCTGGGCGCGTTGCCCTTGGACTCTCTGCAGTTGTGATTTT TCCGGAGTCCTGTAAATATTGCACCCTGTTCACTGAAGCATGTGCAACCG CCATCCAGAGAACAAATCCGACATCCGCCAACACAGCTCGTGTACTTGGT AGGACTCAAAGCAAGATATTCGGAAGAGAAAAAACAACAACTTTTCTTGA GATCGAAAATTTCGTTTTTGTATGCTTCGACTAAAACACGAACAAGCCAC ACCGCGATGTTTTGCCCACTCGCCTGTGCTCTTGTTGGACGAATCAGGCA CATGCCCGTCTTCACTTGAACGTGGAAAATCCGAAGGATGTCGCGGAGAA GCTCGTAAGGGCTGGTTCGAAGACAATCCAGGAATGCGACAAGCAATTTT GGGGGGCCATGTGAGTACGTGGATGGACTAAAACGTATTCATTAGATGAA AATTAGTTGTTTTTTTCCCGCAAATTTCAATGGGAAGATGGTATTACTAA GAAAAAAGTGTCAACTGAATTTTTGTTTTTCACTTGGATGACCATATTTT TTTAGTCTGCTCTTTTAATGCTGCTGTGAAGCAGTTTTTGGTCGCCTGTC CTAGAGACTTGCGAGAAACTCCCGAAATATGGTCTGAGAAAACGTGTTGT TGGTGCCAAAATGTCAGGTTTTGTTCGTTAATTGTCAGTTTTCATTCGTC AGCATATTTCTAGGTAAAATTCTCGCACATGCTCCGCGATTTAGCTGTTC ATGCTCATGCCGAATCGGAGGGCGTAAACAAGTAGTTTCGTTTTTGTTTT TGTTTTTTAACCCCCTGAAGGCTGAGGTAAAAACCTTGTCCGCTGCTTCC ATATCCAGGCTTTCACCCGCCTATGTCTACACTTCCTTTACAAGTAGTTT CGTGACGCGAACACAAACCTCGGTGGTGCGTCCGCCCACGCAAAGTCGTG CGCAGTGCTGTTGTGATATCAAAATGGAGTGAGTGAAAAAATATTCGATA GGCGTAGTGGGTGTCCAAACAGACGCTCATGGGACTTATTTACTATCAAG AAAAGCGACCTTCGCTATGGTATGTCCTGTGACCCTTCACATTGTGTCTT CTCAATATGAAACAGGGCACAGGGCACTCTTTTTCTGCTGGTAAATACCA CCTTTCAATCCAGCCTTTCGCGAAGTTTACAATATTTATGTTCTGAAACA TACTGCAAAAAGCTTAGGCAGTGATTTTTTCTCTCTTAATCAAACCCCTC TACTCGGATGTGTCCCATTTTCACCACTTCAGATATGGCGTATTCGAGGA CCCCTTCGGGGTGATCTGGAGTGTGTCAGACACTACAAATCAAATTGAGG ACATCCCCAAGGAACTTGAGAGCAAGATCATGCCCTACGCCATGGTGACC GATGCGACCGGTTACCTCCAATTTTTGCAGGATGTGTTCGGTGCGACGCC TTCCATGGAGCCTATGAAACAGTCCAACGGGAAGGTGAGAGTAAACCCAG GGGAGCTATGATGCATATAATGTCATGGATTGAGGATATGGCCATGCACT GAAGGATAGGGACAACAGAAACGATGCGCCATGTGTTCTACGTTGTAGTC AGTTAATGTAGGAGCGTTGTAAGCCCTGGCTCTTGTATTGTTCGCGACAA TTGCTACGATTTCGCTCTGCAAGCATGAGATAACACGAGTTACCATGGAT TACTATAGCTTGACTACCGCCCTGCGCCGCTCTGCCGCATTTTGCGTAGA TAATGTGGTCACAGGTAAGCATCAATGGCGGCAACTTCGCAGTTGGTGAT CAATGTGATGCCTCTGAAGGAACGGGAGCGGAAATCACAATCATCCACAC AATTCCTAAAGGGCAAGCTGAGACAGTGTGTCAGGCATTCAAGGCTACGG GTGGGAATATACTGTGTCCGCCAGCCCCAATGTTTTGGGGGCAGGGTGAG TGTCTCCATCTTTCGTTCTGGAAGCGGTAAGTTGTTCGAAGACACTTAAA CTGTGCTGAACATCGCAGGATGTTGCAGGATATTAGTTGTTGTGATTCGC GCATACTCAGTGCTCGGATATCAACTTTTTACTCAGTAGTGGTGCTGGAT TTGCGCTCTTGCAGCAGGCTGTTTTTGTTTACCTCGTCGCCTGTTTTGCT TGAACGAGAGGCGGTCGACAGAAGTCCCGCCCCCGCTGGAACAGGTAAGC CATTGCCTTGCCAAAGATCACCCTTTCCTTCAGAAAGCAGACTATATCTG AGGGTTGAACGTGTTACCATAACCAAGAAACACATATGTTCTCCACTCAA TATTTTGTTTGCGCTCACGAAGCAGTCTATCCTGGCCGATCCTATCAGAG GCAATTAGAGCAACGGTAATAGAAATCCATGGTTGATTCAGCCCTCTCGG TCACCGCTAGTCGCACGCTCTCACTCTAATATTACGCTTCACCGACTCAT TGACATGCCCCTACCTCACCCGCCCCTCTTCGCACGCGGCGTGTTCTTTA GTCTGGGGCCGGTGCAAAGATGCGTTTGGCCAATCCTGGGGAATTTGTGA ACCGCCCTCTGGAACTCCTCCGACTAAAGAGGACATGGCGATCGACGTGA AGCTGGGCGAGAAGTACAAGTGGAAGTGGTCCTGGTCGATCGAAGATGTG CCTAAGATATATTGCTTGGGGGAGGTGAGGAACAGGCACATACGTTCGTT TGTTCTGGGGTTCTCTTGGTTCGAAACGATTGAAAATTATATGTTCCTAC TGTGTTGGTGGGATACGACAGGACGTGTGAAAGCTCTGCGCAAAGCGATG GGCCAAGTTTTCAGTTCGTCACGATCCATGATCGTGTGTCATGGTCCAAT ACCGTACTCCTGACATCCAGTTAGCCTAGCCAGTGATTACACCGATTACA ACTGTTTCTCAAGTTCTCAATTCAAGCCGCTCACACCTGGTCCCACCCAC CCCCAACCGTTCCCCGTTTTTCTTGGTTCCCTTGTACGAAATCACAAACG GTCACGAACAGGTGCGCACATGTCTGGCGAAGTCGTCTGCCGTTGCACCT CTCATAGAGAGCCTCCTTCCTGCCGCCGTCGCCGAGGCAGGAAAACGGGG CCTCGAGATCGTGGGGCCTCCCCTTAGCGGCTACTACTCATGGGATCCCA AAGAAGGCGGCGAGACGTCCTTCACGACAGGCCCCATGGTTGCCGGTGAT TCGTCGACCGAGGAGGCTGCGAAGGACGATACCGGATTGGGCTTCCGCTC GCTTGGCGGGGTGAAGTGTGTGACGGTGACGCACGTGGGACCGTACGACG AGCTGGGAAAATGCTACGAGGCCACTTTGGAGTGGATTGCTGCTAAGGGA TACGAGGACAAGTGTCCCGTGACGGAGATATACGAGAACGATCCCAAGGA CACCGAGCCGGCAAAGCTCAGGACCAAGGTGTCTGTGCCCATCGTGCTCA AGTAGACAGTGATGACGGGACAATCCCGTCGCCAGGTTGTGGCATTGTTC GTACAGGGAGAATCAGAAGAGAGAGGACGCGTGAGAAGGGGAGGAGAGAA AGGGACGTGAGATGGTTTGGATATGCGAGTGGCATTGATTCCTGTCTTGT TGTTTCGTGGCTGCCACAAAGATCCTCTGCACGAGCGGTGTGCCGTCAAT CTTTTTCTGGGACAGTACCTTGGCTGTCCATTCATGGATTGTATTTGTAG AGAGATTATTGATTGTACCTGTTATGCGTCGAAGTGACCCACCTGTAGTA GTTATTCGCTACCTGTAGCAATTTGCAGCCATGGCAGGGCTCAGATGTTG TGCTCGTATCTGCTGCTGCTGCTGCTGCTGCTGTTATTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTAAAACTATAGGGGCGTCCAATGTCATTGCTGT ATATTAGAGATGTAGAGTGTGTCGCATGTGCTCTTGACACCACACGTTGC AACTATAATCGTGGCTGTTGTGCATGTAGTCAAGAAACGTGAATGTGTTT CTCGTTTAAATATTTTGTTGCATGGTACTTTTTTCCTTTCTTTTTTGCTT TCGTTACATGTTTTTTTTCACTTTCCTTCCTCTTGATGGTGTCCATGCCA AATCTCGATCACGGAGGTTTCTCGGGCGTTAGGCTCAGTAGCGATGTAGA GCATGGTGCTTCAGCGGCGGAATTGTCCGGTATTTCCTCAAATGTGGTGG GATGCACAGGTTGATACTTGGTGCAGCATGCCGTGTATTGTACGTGATTT TTTTTATCTTCTGACGCTGGCTCTCTCCTATTTAGCCATTTCGTTCAGTG TACTAACTATTAATAGTATCTTGTTGGGCTTCTTTAGACGCAATCCGGAT ATTCCCTCTTGATTCTCGTGCCTCGTTACCACTTTACATACACACGTCGA TTATGGGATACCGTGGGCACGTAGGTGACCGATTTTTGTGTGCGGTGTTG CTGCGAATGGTTTGACAACGTCTTGACACGTTGAACAGGGTTCGGTCAGG C
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Coding sequence (CDS) from alignment at H-paniculata_contig87:12800..19700-

>mRNA_H-paniculata_contig87.16633.1 ID=mRNA_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig87:12800..19700- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTCTTTCGACACAAAAGCCGAGGGCTCTATCGCTGAACAGGAAGC
GACCATGAACGCCACCCCAGTGAGCTCTGCACAAAGCGACATGGCTTCTT
TCGACACAAAAGCCGAGGGCTCTATCGCTGAACAGGAAGCGACCATGAAC
GCCACCCCAGTGAGCTCTGCACAAAGCGACCCAGCTACTCTCCGTGGTGT
CGTGGTGAGCCTTGTCGTGGACAGCACAGACAAGGTTAAGGAAACTATGA
ACAAGACTATAGGGGCAAGGGAGTATTTCCGGGCTTCCGACGCCAACAAC
AAGATTATGCATCTCGCTTTGGACGTCGGCGGTGTGTCGATGTACTTGGA
GGAGATCGGGCACCGCGTGTACAAGGGAGCCGATAAGCCAGCTACTCTCC
GTGGTGTCGTGGTGAGCCTTGTCGTGGACAGCACAGACAAGGTTAAGGAA
ACTATGAACAAGACTATAGGGGCAAGGGAGTATTTCCGGGCTTCCGACGC
CAACAACAAGATTATGCATCTCGCTTTGGACGTCGGCGGTGTGTCGATGT
ACTTGGAGGAGATCGGGCACCGCGTGTACAAGGGAGCCGATAAGGCACAT
GCCCGTCTTCACTTGAACGTGGAAAATCCGAAGGATGTCGCGGAGAAGCT
CGTAAGGGCTGGTTCGAAGACAATCCAGGAATGCGACAAGCAATTTTGGG
GGGCCATGCACATGCCCGTCTTCACTTGAACGTGGAAAATCCGAAGGATG
TCGCGGAGAAGCTCGTAAGGGCTGGTTCGAAGACAATCCAGGAATGCGAC
AAGCAATTTTGGGGGGCCATATATGGCGTATTCGAGGACCCCTTCGGGGT
GATCTGGAGTGTGTCAGACACTACAAATCAAATTGAGGACATCCCCAAGG
AACTTGAGAGCAAGATCATGCCCTACGCCATGGTGACCGATGCGACCGGT
TACCTCCAATTTTTGCAGGATGTGTTCGGTGCGACGCCTTCCATGGAGCC
TATGAAACAGTCCAACGGGAAGATATGGCGTATTCGAGGACCCCTTCGGG
GTGATCTGGAGTGTGTCAGACACTACAAATCAAATTGAGGACATCCCCAA
GGAACTTGAGAGCAAGATCATGCCCTACGCCATGGTGACCGATGCGACCG
GTTACCTCCAATTTTTGCAGGATGTGTTCGGTGCGACGCCTTCCATGGAG
CCTATGAAACAGTCCAACGGGAAGATAATGTGGTCACAGGTAAGCATCAA
TGGCGGCAACTTCGCAGTTGGTGATCAATGTGATGCCTCTGAAGGAACGG
GAGCGGAAATCACAATCATCCACACAATTCCTAAAGGGCAAGCTGAGACA
GTGTGTCAGGCATTCAAGGCTACGGGTGGGAATATACTGTGTCCGCCAGC
CCCAATGTTTTGGGGGCAGGATAATGTGGTCACAGGTAAGCATCAATGGC
GGCAACTTCGCAGTTGGTGATCAATGTGATGCCTCTGAAGGAACGGGAGC
GGAAATCACAATCATCCACACAATTCCTAAAGGGCAAGCTGAGACAGTGT
GTCAGGCATTCAAGGCTACGGGTGGGAATATACTGTGTCCGCCAGCCCCA
ATGTTTTGGGGGCAGGTCTGGGGCCGGTGCAAAGATGCGTTTGGCCAATC
CTGGGGAATTTGTGAACCGCCCTCTGGAACTCCTCCGACTAAAGAGGACA
TGGCGATCGACGTGAAGCTGGGCGAGAAGTACAAGTGGAAGTGGTCCTGG
TCGATCGAAGATGTGCCTAAGATATATTGCTTGGGGGAGTCTGGGGCCGG
TGCAAAGATGCGTTTGGCCAATCCTGGGGAATTTGTGAACCGCCCTCTGG
AACTCCTCCGACTAAAGAGGACATGGCGATCGACGTGAAGCTGGGCGAGA
AGTACAAGTGGAAGTGGTCCTGGTCGATCGAAGATGTGCCTAAGATATAT
TGCTTGGGGGAGGTGCGCACATGTCTGGCGAAGTCGTCTGCCGTTGCACC
TCTCATAGAGAGCCTCCTTCCTGCCGCCGTCGCCGAGGCAGGAAAACGGG
GCCTCGAGATCGTGGGGCCTCCCCTTAGCGGCTACTACTCATGGGATCCC
AAAGAAGGCGGCGAGACGTCCTTCACGACAGGCCCCATGGTTGCCGGTGA
TTCGTCGACCGAGGAGGCTGCGAAGGACGATACCGGATTGGGCTTCCGCT
CGCTTGGCGGGGTGAAGTGTGTGACGGTGACGCACGTGGGACCGTACGAC
GAGCTGGGAAAATGCTACGAGGCCACTTTGGAGTGGATTGCTGCTAAGGG
ATACGAGGACAAGTGTCCCGTGACGGAGATATACGAGAACGATCCCAAGG
ACACCGAGCCGGCAAAGCTCAGGACCAAGGTGTCTGTGCCCATCGTGCTC
AAGTAGGTGCGCACATGTCTGGCGAAGTCGTCTGCCGTTGCACCTCTCAT
AGAGAGCCTCCTTCCTGCCGCCGTCGCCGAGGCAGGAAAACGGGGCCTCG
AGATCGTGGGGCCTCCCCTTAGCGGCTACTACTCATGGGATCCCAAAGAA
GGCGGCGAGACGTCCTTCACGACAGGCCCCATGGTTGCCGGTGATTCGTC
GACCGAGGAGGCTGCGAAGGACGATACCGGATTGGGCTTCCGCTCGCTTG
GCGGGGTGAAGTGTGTGACGGTGACGCACGTGGGACCGTACGACGAGCTG
GGAAAATGCTACGAGGCCACTTTGGAGTGGATTGCTGCTAAGGGATACGA
GGACAAGTGTCCCGTGACGGAGATATACGAGAACGATCCCAAGGACACCG
AGCCGGCAAAGCTCAGGACCAAGGTGTCTGTGCCCATCGTGCTCAAGTAG
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