mRNA_H-paniculata_contig8692.16629.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8692.16629.1
Unique NamemRNA_H-paniculata_contig8692.16629.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.570e-28
Identity = 70/165 (42.42%), Postives = 107/165 (64.85%), Query Frame = 1
Query:    1 DTKLSADEKTRFPVNLLVLKAMHDRERLATLAASVVVVGGDTSDDDTLDASDREAMAKAAHFSSFAAAAY-GVMGNFAKLKELVAKEESMPPAELLYDMAL-LKKWYVSRHTSIATEDVKGIVTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVCNS 489
            D ++SA+E  R P+N L++KAMHDR+ LA  + +      +    D L   DR  + K+AH++ FAAA+Y GV+     +KE++A+ +++PP +L       L+KW +S+ T +   DVK + T+ SL+ R   VAVDH++RSVV+SIRGTY+  D MVDL+CN+
Sbjct:   73 DIQISAEEGKRLPLNFLMVKAMHDRQLLARRSRTAKTSARNRPRVD-LSPRDRRTLRKSAHYARFAAASYDGVVDT---VKEILAEGDTLPPPDLFAKSNDDLRKWCISKRTGVDPSDVKELATSDSLETRTHFVAVDHASRSVVISIRGTYSFTDTMVDLLCNT 233          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A7S3BEX3_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BEX3_9VIRI)

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-10
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  148 ASDREAMAKAAHFSSFAAAAYGVMGNFAKLKELVAKEESMPPAELLY-DMALLKKWYVSRHTSIATEDVK-GIVTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVCNS 489
            A+ RE +A+A H   FA AAYG +     +  L   + S+PPA ++   +   ++W V+ H  I   DVK   +  GSL   ++ VAVDHS+RSVVL++RGT  + D +VDLV +S
Sbjct:   68 AAPRELVARARHLMRFADAAYGSV----LMSALGTYQGSLPPAGVVARGVEATERWCVASHLGIDEADVKESHLVGGSLDLPSYYVAVDHSSRSVVLAVRGTSTLEDVLVDLVADS 179          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A7S1HE54_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HE54_HEMAN)

HSP 1 Score: 67.0 bits (162), Expect = 4.150e-10
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  175 AAHFSSFAAAAYGVMGNFAKLKELVAKEESMPPAELLYDMALLKKWYVSRHTSIATEDVKGIVTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVCNS 489
            A  ++  A AAYGV GN    KE V  E S+PP    +     ++WY+S  T I  ED+  I    S+  RA  +AVD     +VLSIRGT  + DA+ DL+ +S
Sbjct:  154 ALRYAKLARAAYGVAGNDKICKERVFAEMSLPP----WSKDEQEQWYISYDTGIPKEDILEIQMADSVGSRAHFLAVDRKHGEIVLSIRGTATLNDALADLLFDS 254          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A835YZP1_9STRA (Intra-flagellar transport protein 57-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.890e-9
Identity = 30/64 (46.88%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  301 LKKWYVSRHTSIATEDVKGIVTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVCNST 492
            L++WY+S    IA EDV  I  T S++ R+  VAVDH+++SVV++IRGT ++ D+M+DL+ ++T
Sbjct:  451 LERWYISDQVGIAVEDVILIEPTDSVEMRSHFVAVDHNSKSVVVTIRGTMSIVDSMLDLLLDTT 514          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A7S1Z4C1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4C1_TRICV)

HSP 1 Score: 54.3 bits (129), Expect = 3.400e-6
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  118 GDTSDDDTLDASDREAMAKAAHFSSFAAAAYGVMGNFAKLKELVAKEESMPPAELLYDMALLKKWYVSRHTSIAT---EDVKGIVTTGSLK-ERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVC 483
            GD S+D  +D    +A+  A H+  +A+AAYG       +  L+   + +PP  L  D+AL  +W V+ H        EDVK +  + S        VAVD   + VVL IRGT N+ DA+ DLVC
Sbjct:   12 GDGSEDVPID---DKALENALHWCRYASAAYGPT-----MLTLLGLTDELPPLTLDDDVAL--RWCVTHHCRPGVKCDEDVKLLELSDSAACAPCHFVAVDREKKRVVLCIRGTSNLEDAVTDLVC 127          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A7S4M7F5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M7F5_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 5.110e-5
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query:  316 VSRHTSIATEDVKGIVTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVCNS 489
            +  HT I+ +D+     T S    A  VAVDH T SVVL+IRGT+++ DA+ DL+ +S
Sbjct:  163 ICEHTGISLDDIIATKWTSSDFHPAHFVAVDHRTESVVLAIRGTFHIKDALTDLIAHS 220          
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Match: A0A8H7VEL7_9FUNG (Lipase_3 domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VEL7_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 7.170e-5
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  145 DASDREAMAKAAHFSSFAAAAYGVMG-NFAKLKELVAKEESMPPAELLYDMALLKKWYVSRHTSIATEDVKGI---VTTGSLKERAFLVAVDHSTRSVVLSIRGTYNVYDAMVDLVC 483
            D +DR  M +A H+  +A  AYG  G  +        +E   P +  L          + R  ++  ED+ G    +  G++ + ++ VA+D S +++VLSIRGT+++YDA+ DLVC
Sbjct:  178 DINDRTLMDEACHYFDYALMAYGWRGLRYLGSYGQYIREARHPRSNRLA---------IIRFLNLHPEDLLGYEYGLRKGAVFQPSYYVAIDRSRKAIVLSIRGTWSLYDAITDLVC 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8692.16629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LQ91_ECTSI3.570e-2842.42Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3BEX3_9VIRI1.200e-1040.52Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S1HE54_HEMAN4.150e-1040.00Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A835YZP1_9STRA7.890e-946.88Intra-flagellar transport protein 57-domain-contai... [more]
A0A7S1Z4C1_TRICV3.400e-636.51Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4M7F5_9EUKA5.110e-544.83Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8H7VEL7_9FUNG7.170e-531.62Lipase_3 domain-containing protein n=1 Tax=Mucor c... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8692contigH-paniculata_contig8692:938..7240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue4.1e-25
Seed eggNOG ortholog2880.D8LQ91
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size495
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.2425659-CDS-H-paniculata_contig8692:937..12301622931091.2425659-CDS-H-paniculata_contig8692:937..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 938..1230 +
1691481585.832273-CDS-H-paniculata_contig8692:937..12301691481585.832273-CDS-H-paniculata_contig8692:937..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 938..1230 +
1622931091.2629702-CDS-H-paniculata_contig8692:7040..72391622931091.2629702-CDS-H-paniculata_contig8692:7040..7239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 7041..7239 +
1691481585.8509026-CDS-H-paniculata_contig8692:7040..72391691481585.8509026-CDS-H-paniculata_contig8692:7040..7239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 7041..7239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8692.16629.1prot_H-paniculata_contig8692.16629.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8692 938..7239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8692.16629.1

>prot_H-paniculata_contig8692.16629.1 ID=prot_H-paniculata_contig8692.16629.1|Name=mRNA_H-paniculata_contig8692.16629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
DTKLSADEKTRFPVNLLVLKAMHDRERLATLAASVVVVGGDTSDDDTLDA
SDREAMAKAAHFSSFAAAAYGVMGNFAKLKELVAKEESMPPAELLYDMAL
LKKWYVSRHTSIATEDVKGIVTTGSLKERAFLVAVDHSTRSVVLSIRGTY
NVYDAMVDLVCNST
back to top

mRNA from alignment at H-paniculata_contig8692:938..7240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8692.16629.1 ID=mRNA_H-paniculata_contig8692.16629.1|Name=mRNA_H-paniculata_contig8692.16629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6303bp|location=Sequence derived from alignment at H-paniculata_contig8692:938..7240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACAAAATTATCGGCGGACGAGAAAACACGCTTCCCGGTCAATCTCCT CGTGCTGAAGGCCATGCATGACCGCGAACGCCTGGCTACACTAGCAGCGT CGGTAGTGGTGGTGGGGGGGGATACTAGCGATGACGATACTCTGGATGCG TCGGATCGAGAAGCCATGGCCAAGGCTGCGCACTTCTCCAGTTTTGCGGC CGCGGCGTATGGCGTGATGGGGAACTTCGCGAAGCTGAAGGAGCTCGTGG CTAAAGAGGAGTCCATGCCCCCGGCTGAGCTGCTGTATGACATGTGGGCA CTTTGTCTAATTTTTCCCAACACCTTCGAGGGTCAAGGAGTGTTCGGTTG TCTTTATGGTTAACAGCTGTATGTGTGCATTATGTATGTATCAGTCAAAT AAACGAAATGCTATCAGCGGTACATGTGACCAACCAGTGCTAAAGGTATT GGATCTGCAGCGAGAGAGACCATGCTTCCCAGTCCTGAAACGTTCGCCCG GCAGGAGTACAAGTACAGTTAGGGGTGCACCTGAGCCCGGTCTAAGGTCG ATTTTTGGTGACAACGACCACGCAGTAAAGCGCCGAATAAAGAAAAAAAG TGTTTATCCCCTGACAGATAACGCCATCTACACCCCACAAAGTATTTGTA TTCAATGTCGGGTTTCCACGCACTTGTAACCTGAATTACTTGCTACAGGT TAGGAACTGGCTCGTGAGACTCAACACACACTTGGATATTTGCCTATTTT AGGGCTTCATCTTGCTGGAATTTCAATCTGCGTTATGAGAACCCCAAACG CCCCAATAAAGAGTGCTTTTTCTGCTACTTTCTCTGTGAAGATTTTTTTC CTCATGACTTCAAAAATACATCAACATGAACCCGAAGCCGTGGATTTCCC GCACACGATGCAAAAACCGTACCCCAACCGATGACCTTGCTGAGGAGTGT TTTGATTCACAAGATAACCACTGAACACAAGCAAGCACCCCACACTACTC GAATTTAAAGTGGCCCATCAACACAAAAAAATCACCCAAAATTACTCGAA TTTTTAGTGCGGGAGAGGACATCCTTTCAAATGTTAATATTCTTCACACA TTTAGCCGTTAGGGAACGATTGGGTGGTCTTGGGCGTAATTCGCGTTGCA TATTGCAAAGGTTGTAGTTCGTTGTTGTAACCAGCATTCTCAGGGTCCCA AAGCACTCGAAACTTAGCTTTGCTCGGCCTTTTTTCCGTCGAGCTGTGAG CTGCAGCAGCACACAATAAAAGGGGACAACGTGGTTAACACAGCAGCAGA AGCTCTCCTTCTTCGCGCATCCTACGCAAAACCACCTTCCAATCCACGAC GTTACTGAGGAGCATTTTGGTTTAGTGCCTAATATGATCAAGAAAGGAAA GGGCAAGCGACGATCGAAACTGGCGCGAAAGAAAACGCTTCTAAAGATTG GAGATGAATACCTTGCGCGTACTGGCATGACCGTCTCGGAAGCCGCCACG CGTCGGTGCACCGATACTGCCCAGAAGCGCGGAGACCTCCAAGAAGCGCA GCGAAGTTGCAATAGAGCACTCAAGAAAGTTGAGGATGCCCGTGCCCACT GCCGTGAGGCTGTCGCAGCTCGTGCAGCGGCGGAGGAGGAATGTCAGGTC GAAAAAACGACGCGTGGAGTAGCGGAGCACATATGTACGGCTATCTTGAT TTCGATGCCGCCGCTGCCACCGCTTCTTCTGCTGCTGCAGCTGCCGCTGT CGCCGCCACTCTTTCTGTCTGCTTTCGTTGACCCGTTCTTTCCGTAGTCA AGGCAGAACCTCCAACAACTAACGAAGATCGAAGCCCTGTCCTCTGAGGT TGAACGGCTGAAATTTCAAACCCCTGCTTCCGCCGCGACCGAACTTCAGC AGGAGGAATTCGGCATAGACTGGGCAATTACGGACAGGGTACTCGACCGC TTGCGGCCCGTCGTGAAACCCGAGAAGAGCAAGAAACGCGCGTACGGGAT GGTTTCCGCGCGTCTTCACCAGACCTACCTTCAGAGTGGTATCCTTCTCC GAAACATCGACGGCCTCATAATGACCACAATCTTTGCTGCGACTGGCACA CAGCTCGATGGTGGAAAAACGAAATTCCACAGCAAGGCAGTCAAAAGGCT CGCCCGTGGTGTCTCCAGTCTTGATTCGGTGGAGCTCGCGAAAGCCATTC GGAAAGCTCCTGCTGTTGCACTCAGAGGGGGGAAGTGAGAGGTAGCTCTC GCCTGTACAGGAGTTTCTCTGTTTTGTCTGTAGCTCCTCAGCCTTTCTGA TGGCTTCTTCGGGGTTGTTCATGTTTTGGTATTTGGGATACCCTGCCTTT TTCGAGACTATCCATTTTTAGTTTCTTTAGTTTACACTTGGTCTCCGGTG TTTATTATGATTTTTTTTATTACTATAAGGTGACGTTGGGCCTCTCGATG GTTGTGTGTGTCTGGTGTTTTTTGGGGTGACGTCAACTTAATTTTTTTCT TATTTGGCCCAAACCCTCTAAAATGCTGACAATAAATACGTGGTCTTTGC GACAAAATTACGTGGTCTTTGCGACACAATTACCGCACTATACAAGACTC AGGCGCACCCCTAACAGTAACAATCTTTTACAAGAAAGACCGTGAAGGGC GGGATACCGAGAGCAAACGTAGCATTTCTAGTGAAACACGCACCAAAGTT TCATCAAAATGGATCGTTGGTTCACTCTCCGTGCTGAGGCGGGCTACAAT ATAGTATTTTCAATACACAACGTATCGCAGTTTACACCTCGTTTCTCTTC ATACGTCATTCTCCTTTTAAGGAGGTGTTTCGCCAGTGTCCCTATCGTGA ACCGTGCGTGTTCACTCTAAAACCCCATGCCTCGAACCCACCATGTGTTA CTTAATCACGAGACTCATCTACGGCAGCTTCGGTAGAGGTAGCTGACGAG AGAGACGGGGGTCGATAGAGGACAGGAGTGGGGGCGGGTGTATTCATGTT TTGCATGTCATAATTGTTACCCTATGCCATTGACTACGCATCCTCGGATG GATGGAGCTTTGTTTCTGTCAGAGCAAATTCCGATGATCAATCGCTCTTT CTTACGTTGCCAAATGTGACTCAAAATGTCTTTACCTGTCGTATCTACCT CAACCCCCATGTGTTCAGGCTAATTTCTATCTCCTAGAATCGCTATTGCT ATCGCCTTCTTCCCGCAATCCCAGGATCCAAATGCCTCTATCGAATCCTT CGACTTTTCCTGCTCCATTCATAAAGGTTTTTCTCTATTTTTCACATAAG AGGCTTTTTCCCACAACGTGAATTCGATCCTCACACGCACTACCGCAGTC ACATTTAGGCATATCGTCGTCATCTTCATGTACTATCCTGAACCGCTTTC TACGTTCCTTGAGGTCTAGATCCCCGGTCCTATATTTGACTTTCAACTGT GTGCCTGCATCTAATGGCCCGTGTGAATAAATACCCTTTCAACCCTATCC CTTCATCCAGTCTTTGGTATACTTCCACACCTTCCTGACATACAGTTTCT CCTCTTAGCCCTTGTTGTTCCCTAACTGCAGTTGCACCCGCTAATTCCTC CTTGAAATCGCCCATGTTTTTACTTGTCATGTCTCCTCTTTGAAAAGTCT CATCTCCTTCCGCACTTTGTTTACTACAGTATTGGACTCAGCAGACCTTG TACCGCTTTCGGTTGATTTCCACTCAGCTTTTCTTGCGATTTTTGGCGGT CTGTTTTCTCCCATTTCAAATAACCTGTACTGCAACTTTAGCTTTGTTGC GTCTTTCCCCACTTTCAGCGGGGTATATGCCCAACTCTGGCCTCGCTGCT GCATTGCTGGTACGCTGCGAACATCCTAGTGCAACATTCGCTGCGTTAAT CTGAACTTTTTCCAGCTCCTTGATGATCCCTTCCCAACGCTTGTCAAACA TTTTTGTTTTTATGACACGTGTGTCAAGATTCCGATCGGCTAATTAATAT CAAGGGCAATTTTCCCACCTAGGCCCTCCCTTTTTCGGTTTCTTTCTTCA AATGTATATGCCACATACAGTCCTTCGAGATCTCAACGCCGAGATATGTG TACTGTTCCACGTTTGGTAGCTCCCCATTTCCACTTGAAGTCTACCTCTT CCATCTTACTCTCGTTGAATATCATTACGGTACACTTCTTGACATTAGCT GAGAGACTCCAATTCCTAGCAAATCCAATCGGTGCACCAATCTGCTTATG CAGTCCCTCCGGAGTAGCAAGTATCCCCACGATGTCATACGCAAATACTA GTCCAGGTACCTCACTCTGTTCTTCTTGTACCCATTGCCCTACTGCCTCT AATGCTTTCAATATGTCATTGATAAATATCTGAAGCAGCATTGGAGATAG CGTACATCCTTGGGGGACCCCTTGCTAAACTTCAAAAAGCTCAGACAGTT CCACATCGAGCACGACAGCACCTTGGGTGCACTGTCATCTTCAAAATTCT CCACATTTTCCCGTTCATCCCGTATTTTGATCGCTGCTTCCACAACAATT CCTCCATCCTTTACCATACCCGTCGTGCACGCCCAGAAAGAAACAGTACG TCTTGGGCCGTGCCCTCTTCCTACCCTGGATAATTCTACCCAATGTGTAC ACGTGGTCTACGCGACCCGTTTTGCGTCGGAATCCTGCTTTCCTTTTTCA GTACTCAAACTTTTCTGTCGTCCAGGAGTTTGCGAAACACCTTCCCTGAT ATGTTCAGAGGTATGATACCTGTCACGTTACCTGGGTCTGTTTAATCCCC TTTATTCAACAAGTTTACAACAACCCCCCCCCTCTCTCTATCTGCTTGGC GCGTACTCGTTCTTATACAACAAGTTATACAGCAGTATCGCAATTTTTAC CATCCTCTTTCCCACCACTCGTCATGAATTCGTTTACGACCCCATCTTCC CCTGCTGCCTTGTGGCTCTGAGGTTTGGTTATGCATTTTTCAATCTCGTC AGCGTTGAAGTCTCTCTGGAGCTCTTCGGTTCCGTTTTTTTCTTTTGATG CAATTTCTGCTCTTTTGACCCACTCGTCCTCCTCTTCCTTGAGTACCTTA CCAAATTTGGCATTCACCGACGTGATCCCCAGTCTCCTATAGTGTCCTTC TAGTATTGTTCTCTTGCCCTTTCCGCCATTGACCGGTCTCCCGTGTACCG CTCAAATCGTTGCCACCCTAGTCTTCCCTGCTTTCCCGCTCTTGTCTATA ATTCCGTTTATGCTCTGCTGCATCTGCTTTACTTCACCTTCCAAATCTTT GTCAGCCGTATGTACTGCTTCTGTGCTGCTTCATTCCGGTTCTCGTTTTT CTTCCTTATTACTATGCGTCGCACTTGTTTCCTCTTGGCTTTAAACCCTT CCCAATTCTCTATCGACTCATCCTCTGTGTGTTTACAATGAGCGTCTCTC CTGTCTTTCGTTGCTGCTCTTAATTCATAATCCCATCATTTGACAGACGT ACCACATCGGGTCATTTTCATACGAATTGCTTTCGCAGCCGCTGACGGGG TATGCGTGTGTGATGGGGACAGAGGGTACATGATGTATAGATTTCCTCTC GACCAGAGATGAGTAGGTGTGTGGGTTTGGTGTCTCGGTGGCTTGTTGGG CAACAGAGCATCGTGGTGGCCATGCCTGGTTGTGTCTGAGCTTAACGGAG ATGCGTTCGATCTGAAGCACAGATTGAATTGTTCCTGAAGCTGAGTGTTC TCTCCGACCATTCGGCTCTTTCTCTCTCTCTGGGTGTGTTTGCAGTCGGT GATGGTACCGCACGTAGTTGAAATGATGATGTCACGGCTGAATTCGCGCA GTGAAATTGCCGTTTCCGTTGCTGGCAATCCAACACAACAAGTATTTTGA GTTACTAGCAGATAAAAGAAGCCGAGGCTACACCCCTAAAATGCTCAAAT ATAACAGTACACAACCCTATCCCGAAACCACCACCGTTACCCCCACGATA CCGGTATTTGTTGATGAATTGAATGAGGTAAGGGACTACCCAATAGCAGG TTAATGGACATTTTTGTGAAACGTTGTCCCCTCTTTCTCTCTTATTTGAT CAGGGCTTTACTCAAGAAGTGGTACGTGAGTCGACACACGAGCATAGCGA CAGAGGACGTGAAAGGTATTGTCACGACTGGCTCGTTGAAAGAGCGCGCA TTCTTGGTGGCTGTGGATCACTCCACGCGCTCGGTCGTGCTAAGCATCCG AGGCACGTACAATGTTTACGACGCCATGGTTGACCTCGTCTGCAACTCTA CAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8692:938..7240+

>mRNA_H-paniculata_contig8692.16629.1 ID=mRNA_H-paniculata_contig8692.16629.1|Name=mRNA_H-paniculata_contig8692.16629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig8692:938..7240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACAAAATTATCGGCGGACGAGAAAACACGCTTCCCGGTCAATCTCCT
CGTGCTGAAGGCCATGCATGACCGCGAACGCCTGGCTACACTAGCAGCGT
CGGTAGTGGTGGTGGGGGGGGATACTAGCGATGACGATACTCTGGATGCG
TCGGATCGAGAAGCCATGGCCAAGGCTGCGCACTTCTCCAGTTTTGCGGC
CGCGGCGTATGGCGTGATGGGGAACTTCGCGAAGCTGAAGGAGCTCGTGG
CTAAAGAGGAGTCCATGCCCCCGGCTGAGCTGCTGTATGACATGACACAA
AATTATCGGCGGACGAGAAAACACGCTTCCCGGTCAATCTCCTCGTGCTG
AAGGCCATGCATGACCGCGAACGCCTGGCTACACTAGCAGCGTCGGTAGT
GGTGGTGGGGGGGGATACTAGCGATGACGATACTCTGGATGCGTCGGATC
GAGAAGCCATGGCCAAGGCTGCGCACTTCTCCAGTTTTGCGGCCGCGGCG
TATGGCGTGATGGGGAACTTCGCGAAGCTGAAGGAGCTCGTGGCTAAAGA
GGAGTCCATGCCCCCGGCTGAGCTGCTGTATGACATGGCTTTACTCAAGA
AGTGGTACGTGAGTCGACACACGAGCATAGCGACAGAGGACGTGAAAGGT
ATTGTCACGACTGGCTCGTTGAAAGAGCGCGCATTCTTGGTGGCTGTGGA
TCACTCCACGCGCTCGGTCGTGCTAAGCATCCGAGGCACGTACAATGTTT
ACGACGCCATGGTTGACCTCGTCTGCAACTCTACAGGCTTTACTCAAGAA
GTGGTACGTGAGTCGACACACGAGCATAGCGACAGAGGACGTGAAAGGTA
TTGTCACGACTGGCTCGTTGAAAGAGCGCGCATTCTTGGTGGCTGTGGAT
CACTCCACGCGCTCGGTCGTGCTAAGCATCCGAGGCACGTACAATGTTTA
CGACGCCATGGTTGACCTCGTCTGCAACTCTACA
back to top