mRNA_H-paniculata_contig8689.16625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI) HSP 1 Score: 389 bits (998), Expect = 3.400e-130 Identity = 205/255 (80.39%), Postives = 219/255 (85.88%), Query Frame = 1
Query: 1 MKSFVAAA-SVCALAPAVNAFV-GPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGD-GPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFF 756
MKSFVAAA S+CALAPA +AFV G PL+ VR+ PS + P+RS +IPIDPYPEGLDG MVGD+GFDPAGFANNPP+WVQGEGTGTAARVKWYREAELAH RVAMLAA GWIFPEIYHFPGN VLG DRFAEM PLLA + IPNAGGIQIV+TILILETIRLNRSIR D G GDIGLGQGEGRWNPF FNYT EEYAEKQLQE+KHGRTAMIGITGMYFQT+ QG+ IL QL EAFS PD VAKAGYFF
Sbjct: 1 MKSFVAAATSLCALAPA-SAFVPGASLPLAGVRS-APSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 253
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA) HSP 1 Score: 251 bits (642), Expect = 3.490e-76 Identity = 122/210 (58.10%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
D S A+P D P LDG++ GD+GFDP GF+NNPP W+ G G+ +KWYREAE+ H RVAMLAA GW+FP IYH PGN +G D FA + P AL +P AG QI T+ +E R+NR IRGD GD+GLGQGEGRWNPFGFNY+ EEYAEKQLQE+K+GR AM+GI G+ Q GK I+ QL +F VP+ V+KAGY+FP
Sbjct: 83 DLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFP 289
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK) HSP 1 Score: 243 bits (621), Expect = 1.170e-73 Identity = 139/259 (53.67%), Postives = 168/259 (64.86%), Query Frame = 1
Query: 1 MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPE-IYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
M F A A+ AL V+AF P APL V T+ ++ LSM +RS A+P+DPYPEGLDGTM GD+GFDPAGFANNPP W+ G G + + WYREAELAH RVAMLA GW FPE YHFPGN + G D FAE P+ AL+ P G IQI L I +E R+ IRGD PGD+ LGQ G NPFG NY +EY +++E+KHGR AM+GI GM FQ G + QL AF+ P+ V AGY+FP EG+
Sbjct: 1 MAKFAAVAA--ALMMGVDAFQAP-APLKNVATS--TSSLSMMQGERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRAPGDLNLGQ-RGAINPFGLNYDDDEYFLMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYFP-EGI 249
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA) HSP 1 Score: 243 bits (619), Expect = 1.960e-73 Identity = 134/254 (52.76%), Postives = 161/254 (63.39%), Query Frame = 1
Query: 1 MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPP-AWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
MK+ A A A A A PVAP + V +RS AIP D PE LDG++VGD+GFDPAGF+NNPP AW+ G G +KWYREAE+ H R AMLAA GWI PE HFPGN +G D FA+ P AL +P+AG QI TI +E R+NR +RG PGD+GLGQG NPFGFNYT EEY KQLQELK+GR AM+ I GM+ Q+ + ++AQLS AF+ PD V KAGY+FP
Sbjct: 1 MKAVAALAFAVAPAAAFLPVSAPVAPAQG--------SVMKMVSERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFP 241
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA) HSP 1 Score: 240 bits (613), Expect = 1.390e-72 Identity = 119/210 (56.67%), Postives = 148/210 (70.48%), Query Frame = 1
Query: 133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPP-AWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
+RS AIP D PE LDGT+VGD+GFDPAGF+NNPP AW+ G G +KWYREAE+ H R AMLAA GW+ PE HFPGN +G D FA+ P AL +P+AG QI TI +E R+NR +RGD PGD+GLGQG NPFGF+Y+ E+Y EKQLQE+K+GR AM+ I GM+ Q + ++++LS AF+ PD V KAGYFFP
Sbjct: 34 ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFP 238
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE) HSP 1 Score: 219 bits (558), Expect = 1.200e-63 Identity = 111/194 (57.22%), Postives = 130/194 (67.01%), Query Frame = 1
Query: 133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANN-PPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSE 711
DRS A+P D YP GLDGT+ GD GFDPAGF NN P W+ G G +KWYREAE+ H RVAMLA GWIFPEI HF GN +G D FAE+ PL A+ P AG +QI I LE R+ R I+GD GD+GLGQGEGRWNPF FNY+PEEY Q +E+K+GR AMIGI M Q G+ +L QL +
Sbjct: 96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQ 286
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC) HSP 1 Score: 212 bits (540), Expect = 1.640e-61 Identity = 116/242 (47.93%), Postives = 146/242 (60.33%), Query Frame = 1
Query: 22 ASVCALAPAVNAFVGPVAPLSAVRTNGP-------STQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANN-PPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSV 723
A+V LA NAFV P ++ + P + M DRS A+P+D P LDG++ GD GFDP GF+NN P W+ G G +KWYREAEL H RVAMLAA GWIFPEI+H PGN +G D FAE P AL +P G QI T+ +E RL R +RG+ GD+GLGQGEGRWNPFGF + +EY Q++E+K+GR AMI I GM Q G+ +L Q+ E F +
Sbjct: 6 AAVALLAVCANAFV----PQGVLKRDSPLRKSLTRPSMAEMGESDRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGFGL 240
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN) HSP 1 Score: 206 bits (525), Expect = 1.620e-59 Identity = 114/215 (53.02%), Postives = 148/215 (68.84%), Query Frame = 1
Query: 142 PAIPIDPYP---EGLDGTMVGDIGFDPAGFANNPP-AWVQG-EGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
P+IP P LDG++VGD+GFDP GF+ P AW QG EG G+ +K +REAEL H R+A LA GWIFPE+YHFPG + D FA+M P A++ IP+AG +QI+ + LE +R+NR PGD+GLGQGEGRWNPFGF+YT EEY +KQLQE+KH R AM+GI G+ ++ +L QL E+FS P+ V+KAG++FP EGV
Sbjct: 38 PSIPSIALPWTETNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYFP-EGV 244
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A7S0FUH9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUH9_9STRA) HSP 1 Score: 192 bits (488), Expect = 5.560e-54 Identity = 111/218 (50.92%), Postives = 137/218 (62.84%), Query Frame = 1
Query: 139 SPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQG-EGT-GTAARVKWYREAELAHCRVAMLAATGWIFPEIYH-FPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGP---PGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
S A+P P LDG+M+GD GFDP GF+ P W G EG G + WYREAEL H R+A +A G+I P ++ PGN G D ++ PL A +++P A +QI L + LE R+N IR +G PGD+ +GQGEGRWNPFG +YTPEEY EK+LQELKH R AMIGI G++ Q G I QL AFS PD VAKAGYF P EG+
Sbjct: 37 SQALPFATAPATLDGSMLGDAGFDPLGFSTVPVGPWFNGFEGRDGQIGDLSWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEATGLDAYSNTNPLEAFSQVPGAAILQIFLFMTYLEIKRIN-IIREEGAAYLPGDLRIGQGEGRWNPFGLDYTPEEYDEKRLQELKHCRLAMIGIFGLWAQAQASGVGITDQLGAAFSTPDYVAKAGYFLP-EGI 252
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A6S8TCV5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TCV5_9STRA) HSP 1 Score: 190 bits (483), Expect = 2.350e-53 Identity = 106/226 (46.90%), Postives = 142/226 (62.83%), Query Frame = 1
Query: 103 PSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA--WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKP-ILAQLSEAFSVPDEVAKAGYFFPTEGV 771
P Q S + P++ + LDG++VGD+GFDP GF+ P WV EG G+ +K +REAEL H R+A LA GW+FPEI H+PG + + F +M P AL+ IP AG QI+ ++ E R+N+ PGD GLGQG GRWNPFGFNYTPEEY EKQLQE+KH R AM+GI G+ ++ G +L Q+ E+FS P+ + AG++FP EG+
Sbjct: 27 PKAQKRSSSGAQYPSVALPWTTTPLDGSLVGDVGFDPLGFSKYAPGAWWVGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHWPGKD----NAFGKMNPFDALDAIPKAGWYQILGFMVACEVWRINKLKDPSYMPGDSGLGQGPGRWNPFGFNYTPEEYREKQLQEIKHCRLAMLGIVGLAAKSSGAGDVGVLQQVGESFSSPEYTSLAGFYFP-EGI 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8689.16625.1 >prot_H-paniculata_contig8689.16625.1 ID=prot_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAIback to top mRNA from alignment at H-paniculata_contig8689:5793..9463+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8689.16625.1 ID=mRNA_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3671bp|location=Sequence derived from alignment at H-paniculata_contig8689:5793..9463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8689:5793..9463+ >mRNA_H-paniculata_contig8689.16625.1 ID=mRNA_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig8689:5793..9463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |