mRNA_H-paniculata_contig8689.16625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8689.16625.1
Unique NamemRNA_H-paniculata_contig8689.16625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 3.400e-130
Identity = 205/255 (80.39%), Postives = 219/255 (85.88%), Query Frame = 1
Query:    1 MKSFVAAA-SVCALAPAVNAFV-GPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGD-GPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFF 756
            MKSFVAAA S+CALAPA +AFV G   PL+ VR+  PS     + P+RS +IPIDPYPEGLDG MVGD+GFDPAGFANNPP+WVQGEGTGTAARVKWYREAELAH RVAMLAA GWIFPEIYHFPGN VLG DRFAEM PLLA + IPNAGGIQIV+TILILETIRLNRSIR D G  GDIGLGQGEGRWNPF FNYT EEYAEKQLQE+KHGRTAMIGITGMYFQT+ QG+ IL QL EAFS PD VAKAGYFF
Sbjct:    1 MKSFVAAATSLCALAPA-SAFVPGASLPLAGVRS-APSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 253          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA)

HSP 1 Score: 251 bits (642), Expect = 3.490e-76
Identity = 122/210 (58.10%), Postives = 149/210 (70.95%), Query Frame = 1
Query:  133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
            D S A+P D  P  LDG++ GD+GFDP GF+NNPP  W+ G   G+   +KWYREAE+ H RVAMLAA GW+FP IYH PGN  +G D FA + P  AL  +P AG  QI  T+  +E  R+NR IRGD   GD+GLGQGEGRWNPFGFNY+ EEYAEKQLQE+K+GR AM+GI G+  Q    GK I+ QL  +F VP+ V+KAGY+FP
Sbjct:   83 DLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFP 289          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK)

HSP 1 Score: 243 bits (621), Expect = 1.170e-73
Identity = 139/259 (53.67%), Postives = 168/259 (64.86%), Query Frame = 1
Query:    1 MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPE-IYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
            M  F A A+  AL   V+AF  P APL  V T+  ++ LSM   +RS A+P+DPYPEGLDGTM GD+GFDPAGFANNPP  W+ G G  +   + WYREAELAH RVAMLA  GW FPE  YHFPGN + G D FAE  P+ AL+  P  G IQI L I  +E  R+   IRGD  PGD+ LGQ  G  NPFG NY  +EY   +++E+KHGR AM+GI GM FQ    G  +  QL  AF+ P+ V  AGY+FP EG+
Sbjct:    1 MAKFAAVAA--ALMMGVDAFQAP-APLKNVATS--TSSLSMMQGERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRAPGDLNLGQ-RGAINPFGLNYDDDEYFLMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYFP-EGI 249          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.960e-73
Identity = 134/254 (52.76%), Postives = 161/254 (63.39%), Query Frame = 1
Query:    1 MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPP-AWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
            MK+  A A   A A A      PVAP            +   V +RS AIP D  PE LDG++VGD+GFDPAGF+NNPP AW+ G   G    +KWYREAE+ H R AMLAA GWI PE  HFPGN  +G D FA+  P  AL  +P+AG  QI  TI  +E  R+NR +RG   PGD+GLGQG    NPFGFNYT EEY  KQLQELK+GR AM+ I GM+ Q+    + ++AQLS AF+ PD V KAGY+FP
Sbjct:    1 MKAVAALAFAVAPAAAFLPVSAPVAPAQG--------SVMKMVSERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFP 241          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.390e-72
Identity = 119/210 (56.67%), Postives = 148/210 (70.48%), Query Frame = 1
Query:  133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPP-AWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFP 759
            +RS AIP D  PE LDGT+VGD+GFDPAGF+NNPP AW+ G   G    +KWYREAE+ H R AMLAA GW+ PE  HFPGN  +G D FA+  P  AL  +P+AG  QI  TI  +E  R+NR +RGD  PGD+GLGQG    NPFGF+Y+ E+Y EKQLQE+K+GR AM+ I GM+ Q     + ++++LS AF+ PD V KAGYFFP
Sbjct:   34 ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFP 238          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE)

HSP 1 Score: 219 bits (558), Expect = 1.200e-63
Identity = 111/194 (57.22%), Postives = 130/194 (67.01%), Query Frame = 1
Query:  133 DRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANN-PPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSE 711
            DRS A+P D YP GLDGT+ GD GFDPAGF NN P  W+ G   G    +KWYREAE+ H RVAMLA  GWIFPEI HF GN  +G D FAE+ PL A+   P AG +QI   I  LE  R+ R I+GD   GD+GLGQGEGRWNPF FNY+PEEY   Q +E+K+GR AMIGI  M  Q    G+ +L QL +
Sbjct:   96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQ 286          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC)

HSP 1 Score: 212 bits (540), Expect = 1.640e-61
Identity = 116/242 (47.93%), Postives = 146/242 (60.33%), Query Frame = 1
Query:   22 ASVCALAPAVNAFVGPVAPLSAVRTNGP-------STQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANN-PPAWVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSV 723
            A+V  LA   NAFV    P   ++ + P        +   M   DRS A+P+D  P  LDG++ GD GFDP GF+NN P  W+ G   G    +KWYREAEL H RVAMLAA GWIFPEI+H PGN  +G D FAE  P  AL  +P  G  QI  T+  +E  RL R +RG+   GD+GLGQGEGRWNPFGF +  +EY   Q++E+K+GR AMI I GM  Q    G+ +L Q+ E F +
Sbjct:    6 AAVALLAVCANAFV----PQGVLKRDSPLRKSLTRPSMAEMGESDRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGFGL 240          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN)

HSP 1 Score: 206 bits (525), Expect = 1.620e-59
Identity = 114/215 (53.02%), Postives = 148/215 (68.84%), Query Frame = 1
Query:  142 PAIPIDPYP---EGLDGTMVGDIGFDPAGFANNPP-AWVQG-EGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
            P+IP    P     LDG++VGD+GFDP GF+   P AW QG EG G+   +K +REAEL H R+A LA  GWIFPE+YHFPG +    D FA+M P  A++ IP+AG +QI+  +  LE +R+NR       PGD+GLGQGEGRWNPFGF+YT EEY +KQLQE+KH R AM+GI G+  ++      +L QL E+FS P+ V+KAG++FP EGV
Sbjct:   38 PSIPSIALPWTETNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYFP-EGV 244          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A7S0FUH9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUH9_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.560e-54
Identity = 111/218 (50.92%), Postives = 137/218 (62.84%), Query Frame = 1
Query:  139 SPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA-WVQG-EGT-GTAARVKWYREAELAHCRVAMLAATGWIFPEIYH-FPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGP---PGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGYFFPTEGV 771
            S A+P    P  LDG+M+GD GFDP GF+  P   W  G EG  G    + WYREAEL H R+A +A  G+I P ++   PGN   G D ++   PL A +++P A  +QI L +  LE  R+N  IR +G    PGD+ +GQGEGRWNPFG +YTPEEY EK+LQELKH R AMIGI G++ Q    G  I  QL  AFS PD VAKAGYF P EG+
Sbjct:   37 SQALPFATAPATLDGSMLGDAGFDPLGFSTVPVGPWFNGFEGRDGQIGDLSWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEATGLDAYSNTNPLEAFSQVPGAAILQIFLFMTYLEIKRIN-IIREEGAAYLPGDLRIGQGEGRWNPFGLDYTPEEYDEKRLQELKHCRLAMIGIFGLWAQAQASGVGITDQLGAAFSTPDYVAKAGYFLP-EGI 252          
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Match: A0A6S8TCV5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TCV5_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.350e-53
Identity = 106/226 (46.90%), Postives = 142/226 (62.83%), Query Frame = 1
Query:  103 PSTQLSMSVPDRSPAIPIDPYPEGLDGTMVGDIGFDPAGFANNPPA--WVQGEGTGTAARVKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGGIQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYAEKQLQELKHGRTAMIGITGMYFQTITQGKP-ILAQLSEAFSVPDEVAKAGYFFPTEGV 771
            P  Q   S   + P++ +      LDG++VGD+GFDP GF+   P   WV  EG G+   +K +REAEL H R+A LA  GW+FPEI H+PG +    + F +M P  AL+ IP AG  QI+  ++  E  R+N+       PGD GLGQG GRWNPFGFNYTPEEY EKQLQE+KH R AM+GI G+  ++   G   +L Q+ E+FS P+  + AG++FP EG+
Sbjct:   27 PKAQKRSSSGAQYPSVALPWTTTPLDGSLVGDVGFDPLGFSKYAPGAWWVGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHWPGKD----NAFGKMNPFDALDAIPKAGWYQILGFMVACEVWRINKLKDPSYMPGDSGLGQGPGRWNPFGFNYTPEEYREKQLQEIKHCRLAMLGIVGLAAKSSGAGDVGVLQQVGESFSSPEYTSLAGFYFP-EGI 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8689.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR2_ECTSI3.400e-13080.39Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
W7TTD7_9STRA3.490e-7658.10Light-harvesting protein n=3 Tax=Monodopsidaceae T... [more]
A0A6V1NAG2_HETAK1.170e-7353.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CAI0_9STRA1.960e-7352.76Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YWE6_9STRA1.390e-7256.67Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4H236_9ALVE1.200e-6357.22Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4ELJ2_VITBC1.640e-6147.93Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0Y1D8_AURAN1.620e-5953.02Uncharacterized protein LHC9 n=1 Tax=Aureococcus a... [more]
A0A7S0FUH9_9STRA5.560e-5450.92Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6S8TCV5_9STRA2.350e-5346.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8689contigH-paniculata_contig8689:5793..9463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue2e-106
Seed eggNOG ortholog2880.D7FUR2
Preferred nameLhca6
KEGG koko:K08908
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs2CNEI@1,2QVPT@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-19_004240.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons3
Model size1629
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8689.16625.1prot_H-paniculata_contig8689.16625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8689 5793..8608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.6527462-CDS-H-paniculata_contig8689:5792..64071622931090.6527462-CDS-H-paniculata_contig8689:5792..6407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 5793..6407 +
1691481585.5873601-CDS-H-paniculata_contig8689:5792..64071691481585.5873601-CDS-H-paniculata_contig8689:5792..6407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 5793..6407 +
1622931090.6804607-CDS-H-paniculata_contig8689:7999..81501622931090.6804607-CDS-H-paniculata_contig8689:7999..8150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 8000..8150 +
1691481585.6017022-CDS-H-paniculata_contig8689:7999..81501691481585.6017022-CDS-H-paniculata_contig8689:7999..8150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 8000..8150 +
1622931090.7001765-CDS-H-paniculata_contig8689:8600..86081622931090.7001765-CDS-H-paniculata_contig8689:8600..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 8601..8608 +
1691481585.6144009-CDS-H-paniculata_contig8689:8600..86081691481585.6144009-CDS-H-paniculata_contig8689:8600..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8689 8601..8608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.7226841-UTR-H-paniculata_contig8689:8608..94631622931090.7226841-UTR-H-paniculata_contig8689:8608..9463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8689 8609..9463 +
1691481585.6286976-UTR-H-paniculata_contig8689:8608..94631691481585.6286976-UTR-H-paniculata_contig8689:8608..9463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8689 8609..9463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8689.16625.1

>prot_H-paniculata_contig8689.16625.1 ID=prot_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MKSFVAAASVCALAPAVNAFVGPVAPLSAVRTNGPSTQLSMSVPDRSPAI
PIDPYPEGLDGTMVGDIGFDPAGFANNPPAWVQGEGTGTAARVKWYREAE
LAHCRVAMLAATGWIFPEIYHFPGNNVLGADRFAEMMPLLALNKIPNAGG
IQIVLTILILETIRLNRSIRGDGPPGDIGLGQGEGRWNPFGFNYTPEEYA
EKQLQELKHGRTAMIGITGMYFQTITQGKPILAQLSEAFSVPDEVAKAGY
FFPTEGV*
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mRNA from alignment at H-paniculata_contig8689:5793..9463+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8689.16625.1 ID=mRNA_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3671bp|location=Sequence derived from alignment at H-paniculata_contig8689:5793..9463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCCTTTGTAGCAGCAGCTTCCGTTTGCGCTCTTGCGCCCGCCGT GAACGCGTTCGTTGGTCCGGTCGCACCCCTCAGCGCCGTGCGCACGAACG GCCCGTCAACCCAATTGAGCATGTCCGTGCCAGACAGGTCACCCGCCATC CCCATCGACCCTTACCCGGAAGGCCTTGACGGAACCATGGTCGGTGACAT CGGCTTCGACCCCGCGGGGTTCGCGAACAACCCTCCCGCGTGGGTTCAGG GTGAGGGTACGGGTACCGCCGCACGTGTGAAGTGGTACCGCGAGGCTGAG CTGGCGCACTGCCGTGTTGCGATGCTCGCCGCCACGGGGTGGATTTTCCC TGAGATCTACCACTTCCCGGGGAACAACGTGTTGGGGGCTGACCGCTTCG CGGAGATGATGCCGCTGCTTGCCCTGAACAAGATCCCCAACGCTGGCGGC ATCCAGATCGTATTGACCATTCTTATCCTTGAGACGATCAGGCTAAACAG GAGCATCCGCGGCGACGGGCCGCCAGGAGACATCGGACTGGGCCAGGGGG AGGGCCGCTGGAACCCGTTCGGCTTCAACTACACCCCGGAGGAGTACGCA GAGAAGCAGCTCCAGGTTCGTGGTGTGGTGGTTTGGTATGGTGTATGGCA GAGTGAGAGGGAAGTAGCTGGTGCTTGTATGCAGTCAGACGGAGAAAGGA AGTCATGGGTGAGGTGACTCGAACGTCACCTGCGTTTTTCATTTGTGAAC ATGACAAGCGGTTACCAAATGAAACATGCACACAAATACCACGCCTTTGA TCAACTCTATTATTTCGTCAATTCTCGATTATAACGATGATGAGAAAGTC CTCCTAGTCCGTGGCATGCTCATATATGTGTGTGCGTGTTTATTTTGGAC GCCTGTGGTTATGGAGAGCAGAGTGCACACTTTTTTTCAACTCTGCGTGT ACCCACCCGGTTTTGATAGAAACGTCCCTTAAAGTTTTGGCGTTGTGCGA GAATAACTGTCCGACTGTACTGCTTGATGCAGATGAAAAACCTGTCGAGA TAGACTGTAAAATTTCTCTAGTTTAGATGATATGAGGGGTGTTGCATCTT GCTTTGTACAATATATCAAGCACGAACACGAGCCCAGCACACCGATGCCG ATTCTATTCGGTGCTCTCCGGGATTCTAGCTGTTGCACCCTTCGAGTCTA CACTATCGACCTTATCCGTGGCCGCTAATCTTTGCTTCTACTGTATTGGA ACTGAGGTCATCCGTTTATTTTCGAGAACTCCAATAATCTTCAAAGCAGT TCGTCCCAAACGTCATCCAGCGATTGCCTCAACGCATGATATGGTGCCAG CGATTCATGAACATAATGCATCGAACCTAATGCTTGAAATGGACATGCTC TTTCGCTCCATGACGCGGTTACATTTAAAACTCTGAGCGGCCATCGAGTC TCAAATTTTGCTTGTGAAAACCAAGTAACACATTTACGAAGGATGAGATT TTACAAATCAACAGTCGCTCCCTTGATTGTCTGACTCAGTCCGTATCGAG GCATGAAACCTCCACTTCGGTCCAGGATAGCACTCAACTTCAGTTTTTGA TGTACATACTTTTAACCGCGTGCTTTTTGGAGGCTCTTCCAAAAAGCAAC CCTTTCTGTGCGCATTCTTCATATTTTTTCAGCATAATCACTTTCGCTTT TGTAGTAAAAGAGCCAATTTCATCATCAGAATGTTGGCACGTAACAAAGC AATACATACGAACTCCTTTTTGACTATCCTTCGAAGCGCTACAAATAAAG GCATGTTGTCGGTAAAGGAAGACTGCATTTGTTGTCTGTCATGTGACCGG GAAGGAGCTTGCTGTTCGTGCTGACGTTGTATTTTGCCATGAAGTATTGA TCGTGACACACATGCACTCTTCGTGACTGCAGGCCGCTGCGTTCATCTTG AATATATAATATTTGCCAGTCCACCGAACTATAACATGAACCGAAGTTCT CAATCTCGTGAAATACGAGTTGTAATGGTTGCGAGTGTTGGATTTGACTC TAGATCTTTACGTCTGATAGATTTGAAAAGAAAGTCAACGTCATGCGATT CTGTGAGAAATCTGAGATAAGATCAAGGATCAAAGCCGGTGGGAAACTTG ACGCTGCTTCTGGTTGTGCACTTTCATGTGGGGGTGGTGGGTTCTCGTTT TCTTCAGGAGCTCAAGCACGGACGTACCGCCATGATCGGTATTACGGGCA TGTACTTCCAGACAATCACTCAGGGCAAGCCAATCCTGGCTCAGCTTAGC GAGGCCTTCTCCGTGCCAGATGAAGTAGCGAAGGCCGGATACTTCTTCCC CACTGAGGGTGAGTAAAACGGTTGGTGCCAAAACCGCTACATTCTTGACC AACTGCAAATGGCTGTTCTACCTTTGCCACCGACCAGGATAATGTCTCCA AGGGTCTACATGAAGTAGCCATTGCGACTGCCTTCACCCGTCGGTGATGT CCTGTCTGAAATCAGTTAGTCCAAAGGGATTTGGTGAAAGTTCTAGCTGA CAGTTGCCTGTTTCTTGTATCCCACCCCAAGATGGGATGGGATTTTACGC CGTTCATCCCTTTCGCGTACACTAGATAACAGGACTACTCGAGACACGTC GTGATTAATCGACGTGCTCGAACATTAGCATGAGTTTTGAAAGGCTGTAG AGAACATACGCGTAGGTACATGAAAGAAACCTCCATTACCACGCGTTTTT TCAGGTGATCACATTGTTCTCTTGACCGTTCTTCCTACGATGTGCTCAAA ACTCACAGGTGTGTAACTCGAACGATGTGAGGTGACAACGCCGTCCATGG GTCACTAGCCTGGATAATTTGCACCCGGACAGGCGCAATATTTCCCTCTA ATTGGCTCCAGCACGGAGCTTGCGGCGAAACTTTATTTGGTCGGGGGTTG GCCAAACAAAACGCGCAGTATGATGAAATGGGTTGCTTGGCGGCAACTTG ATCATTCCTTGGTTTCACAAATGTGACGGGAGCATGCGTGGCCTTTTTCA CGAGTGGTGGTTAGTCAGGCCATGACTCTGGCACGGTGGCATGGCGGGAG GTTAATCTTCGGGGATGTATCGTTAGGTAGTTTTCGGTTGCGAGCGAACG CTTGAATGGTTGCCATCGGTCTCCTCGAGGTTGTGGTTATTAAGATGGGG TTTTCGCAATCTTTTACTTTGAGCCATTTTGCAGACTTCTCTCGTTGTGT CTTGTAGCGAGCAGTATCTTCGGGTTCTTGATGTGCCACGTGTTTTGATA TAGAGAATTTACGCACACGTGAACTGTCGAGATTATGTAGAAGGGAAGCG GCGATGTGAAGCTTGATTTTTTAACTCATTTCTGCTTTAGACTGCTCAGA AGATCATCGTTTTGCCTTCTCGTCGCCCTTGGAGGAAGGCGTTTTCAAGA TTATATCCTGGCGTCCCTAAATTACGACTTTTTTAGAGTGGACGGGCAAT TTGGAGTGATGATGATCCATCCTCCTGTGCTGATGACGCAGGAGGCTCGG GTTGAAGTCGTGGAACTGACGTCTTCCTCGTTTCGAATTGGGCGAAAAGT AATGTTGAATCCCGAAAAATACGAGAAATGTCGAAATGTCGAGAAAAAAA ATATATCACCATCAAATAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8689:5793..9463+

>mRNA_H-paniculata_contig8689.16625.1 ID=mRNA_H-paniculata_contig8689.16625.1|Name=mRNA_H-paniculata_contig8689.16625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig8689:5793..9463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCCTTTGTAGCAGCAGCTTCCGTTTGCGCTCTTGCGCCCGCCGT
GAACGCGTTCGTTGGTCCGGTCGCACCCCTCAGCGCCGTGCGCACGAACG
GCCCGTCAACCCAATTGAGCATGTCCGTGCCAGACAGGTCACCCGCCATC
CCCATCGACCCTTACCCGGAAGGCCTTGACGGAACCATGGTCGGTGACAT
CGGCTTCGACCCCGCGGGGTTCGCGAACAACCCTCCCGCGTGGGTTCAGG
GTGAGGGTACGGGTACCGCCGCACGTGTGAAGTGGTACCGCGAGGCTGAG
CTGGCGCACTGCCGTGTTGCGATGCTCGCCGCCACGGGGTGGATTTTCCC
TGAGATCTACCACTTCCCGGGGAACAACGTGTTGGGGGCTGACCGCTTCG
CGGAGATGATGCCGCTGCTTGCCCTGAACAAGATCCCCAACGCTGGCGGC
ATCCAGATCGTATTGACCATTCTTATCCTTGAGACGATCAGGCTAAACAG
GAGCATCCGCGGCGACGGGCCGCCAGGAGACATCGGACTGGGCCAGGGGG
AGGGCCGCTGGAACCCGTTCGGCTTCAACTACACCCCGGAGGAGTACGCA
GAGAAGCAGCTCCAGATGAAGTCCTTTGTAGCAGCAGCTTCCGTTTGCGC
TCTTGCGCCCGCCGTGAACGCGTTCGTTGGTCCGGTCGCACCCCTCAGCG
CCGTGCGCACGAACGGCCCGTCAACCCAATTGAGCATGTCCGTGCCAGAC
AGGTCACCCGCCATCCCCATCGACCCTTACCCGGAAGGCCTTGACGGAAC
CATGGTCGGTGACATCGGCTTCGACCCCGCGGGGTTCGCGAACAACCCTC
CCGCGTGGGTTCAGGGTGAGGGTACGGGTACCGCCGCACGTGTGAAGTGG
TACCGCGAGGCTGAGCTGGCGCACTGCCGTGTTGCGATGCTCGCCGCCAC
GGGGTGGATTTTCCCTGAGATCTACCACTTCCCGGGGAACAACGTGTTGG
GGGCTGACCGCTTCGCGGAGATGATGCCGCTGCTTGCCCTGAACAAGATC
CCCAACGCTGGCGGCATCCAGATCGTATTGACCATTCTTATCCTTGAGAC
GATCAGGCTAAACAGGAGCATCCGCGGCGACGGGCCGCCAGGAGACATCG
GACTGGGCCAGGGGGAGGGCCGCTGGAACCCGTTCGGCTTCAACTACACC
CCGGAGGAGTACGCAGAGAAGCAGCTCCAGGAGCTCAAGCACGGACGTAC
CGCCATGATCGGTATTACGGGCATGTACTTCCAGACAATCACTCAGGGCA
AGCCAATCCTGGCTCAGCTTAGCGAGGCCTTCTCCGTGCCAGATGAAGTA
GCGAAGGCCGGATACTTCTTCCCCACTGAGGGAGCTCAAGCACGGACGTA
CCGCCATGATCGGTATTACGGGCATGTACTTCCAGACAATCACTCAGGGC
AAGCCAATCCTGGCTCAGCTTAGCGAGGCCTTCTCCGTGCCAGATGAAGT
AGCGAAGGCCGGATACTTCTTCCCCACTGAGGGTGTGTAAGTGTGTAA
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