mRNA_H-paniculata_contig8674.16615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8674.16615.1
Unique NamemRNA_H-paniculata_contig8674.16615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 8.330e-58
Identity = 133/322 (41.30%), Postives = 176/322 (54.66%), Query Frame = 3
Query: 1113 QVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*-----GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQGVRSG*QCGGLDMQ*VPLTACCIRSTK*SCTSRT**TGP---GGMASLARGFT*SAQLNFST----NGPPERVEVEDIFFHHGRRLVTYYTYR 2042
            QVLA LQIL RGN F DI  +S IS  T  S FH FCK FA +L+ E +  PT E L   M+ YD +GF G V ST       G  P +   +YT KEG PT+A++ TVDHSGRVL + +   GA ND++++R+DK +   R    Y    YKL  +DG +  EKG +L+VD GYH+WR+L+ P+K    R +L +S RLES RKDVEC   ILKGRFRI+KL ++ F             +  V  T C + +   S  +R   +      G A L          ++S+    +G  E VEVE  F     +LVT + YR
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKL-AIGFHKQEY--------IDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYR 395          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 7.680e-57
Identity = 133/323 (41.18%), Postives = 177/323 (54.80%), Query Frame = 3
Query: 1110 LQVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*-----GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQGVRSG*QCGGLDMQ*VPLTACCIRSTK*SCTSRT**TGP---GGMASLARGFT*SAQLNFST----NGPPERVEVEDIFFHHGRRLVTYYTYR 2042
            L+VLA LQIL RGN F DI  +S IS  T  S FH FCK FA +L+ E +  PT E L   M+ YD +GF G V ST       G  P +   +YT KEG PT+A++ TVDHSGRVL + +   GA ND++++R+DK +   R    Y    YKL  +DG +  EKG +L+VD GYH+WR+L+ P+K    R +L +S RLES RKDVEC   ILKGRFRI+KL ++ F             +  V  T C + +   S  +R   +      G A L          ++S+    +G  E VEVE  F     +LVT + YR
Sbjct:  173 LKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKL-AIGFHKQEY--------IDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYR 486          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.290e-51
Identity = 124/334 (37.13%), Postives = 177/334 (52.99%), Query Frame = 3
Query: 1110 LQVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQGVRSG*QCGGLDMQ*VPLTACCIRSTK*SCTSRT**TGP---GGMASLARGFT*SAQLNFSTNGPP------ERVEVEDIFFHHGRRLVTYYTYRVNNVGVAWL 2069
            L+VLA LQIL RGN F DI  +S IS  TA + FH F + FA +++ E I  PT +     M  YD +GF+G   ST       G  P +    YT KEG+PT+AY+ TVDH+ RVL +     G+ ND+S++R+D  +   RE   Y    + + + DG     KG +L+VD GYH+W +L+ P+K    + +LA+S RLESVRKDVEC   I+KGRFRI KL S+ +            D+  V  T C + +   S  +++         G A L   +  +  L+ S+ G        E VEVE  F    ++L+  + YR +   +AWL
Sbjct:  157 LKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKL-SIPYHKQE--------DIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 8.120e-45
Identity = 103/242 (42.56%), Postives = 139/242 (57.44%), Query Frame = 3
Query: 1056 SVRPSASYDSVTPTVAAL-LQVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISK 1763
            +V P+A+ D        L L+VL  LQ+L RGN F D+ QLSL+S  TA+ +FH FC  F+  L+H+ +  P  E L      Y  +G  G V S      +    P S T+ +  KEG+ TL YEA+ DHSGR+L   K   GA ND+++V+ D ++   RE EP+ S  + L D +G      G  LIVD GYHR  SL+CP KE A+  +  WS R ES+RKD+EC+   LKGRFR+ K
Sbjct:   92 TVFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFK 333          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.940e-42
Identity = 92/228 (40.35%), Postives = 134/228 (58.77%), Query Frame = 3
Query: 1107 LLQVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEET--LAATMKPYDAVGFTG*VDSTA*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQ 1784
            +LQVLA L IL +GN F  I Q+S +S  T Q  FH FC+ FA +++ E I  P EE+  L   MK YD +G             P +    YT K+ FPT+AY+ TVDH+ R + + +   G+ ND+++V +D  +   R  + Y    + L ++DG     KG + + D GYH+W+ L+ P+K   + ++L +S RLESVRKDVEC   ILKGRFRI KL ++++Q
Sbjct:   18 VLQVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKL-AMAYQ 232          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.940e-42
Identity = 98/231 (42.42%), Postives = 137/231 (59.31%), Query Frame = 3
Query: 1113 QVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEET--LAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQ 1784
            +VLA L IL RGN F  I  LS +S  T Q  FH FC+ FA +++ E I  P+EE   L   M  Y+ +GF G + ST    I     P +    YT KEG PT+ Y+ TV+H+GRVL + +   G+ ND++++  D+ +   R  + Y    + +  KDG  +  KG +LIVD GYH+WR L+ P+K   +  +L +S RLESVRKDVEC   ILK RFRI KL ++++Q
Sbjct:  127 KVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKL-AMTYQ 356          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.790e-41
Identity = 100/253 (39.53%), Postives = 137/253 (54.15%), Query Frame = 3
Query: 1113 QVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEET--LAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYR----------------------------SMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKL 1766
            +VLA L IL RGN F  I Q+S +S  T Q  FH FC+ FA +++ E I  PTEE+  L   MK YD +GFTG V S      A    P +    YT KEGFPT+AY+ TVDH+GR + + +   G+ ND+++V +D  ++     + Y                                + + ++DG     KG +L+VD GYH+W+ L+ P+K   +  +L +S RLESVRKDVEC   ILKGRFRI KL
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKL 337          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.800e-41
Identity = 92/217 (42.40%), Postives = 123/217 (56.68%), Query Frame = 3
Query: 1131 QILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKL 1766
            Q+L +GN FDD+ QLS +S+S AQ  FH FC+ FA ++F E I  PT   L   M  +  +G+TG   ST          P +    +T KEGFPT+AY+ TVDH GR L +     GA ND++++R+D  +   R    Y    YKLR  +G ++M +G  LIVD GYH W +L+ P+K     E+ A+S  LESVRKDV C        FRI KL
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKL 250          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.740e-40
Identity = 98/226 (43.36%), Postives = 134/226 (59.29%), Query Frame = 3
Query: 1128 LQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKLPSLSFQGV 1790
            L++L RGN FDDI QLS ISE T Q  FH F +RFA + F + +K P    L   ++ Y  VGF G   S     I     P S    Y  KEGF T+A+E   DH  R LG+ K   GAMND+++V FD+ ++  +     + + + L  +DG E  E+G++LIVD GYH+     CP +   T++ELA+  +LESVRKD+EC   ILKGRFRI K+P L ++G+
Sbjct:  137 LKVLGRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKT--ECKDVPFTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLL-YRGI 354          
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.900e-40
Identity = 92/230 (40.00%), Postives = 132/230 (57.39%), Query Frame = 3
Query: 1113 QVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEET--LAATMKPYDAVGFTG*VDSTA*GCIPVSHTDL----------YTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRFRISKL 1766
            +VLA L IL RGN F  I Q+S +S  T Q+ FH FCK FA +++ E I  P+E+   L   MK YD +GF+G     A G + V+H             YT KEG PT+ Y+ TV+H+GR + + +    + ND++ V +D  ++  R    Y    + + ++DG     KG +L+VD GYH+W+ L+ P K   +  ++ +S RLESVRKDVEC   ILKG FRI K+
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSG-----AMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKV 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8674.16615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE8.330e-5841.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE7.680e-5741.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.290e-5137.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE8.120e-4542.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.940e-4240.35DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE2.940e-4242.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.790e-4139.53DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE1.800e-4142.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.740e-4043.36DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.900e-4040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8674contigH-paniculata_contig8674:2811..5968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2544
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8674.16615.1prot_H-paniculata_contig8674.16615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8674 4262..5226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.16971-UTR-H-paniculata_contig8674:2810..42611622931089.16971-UTR-H-paniculata_contig8674:2810..4261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 2811..4261 +
1691481584.9411578-UTR-H-paniculata_contig8674:2810..42611691481584.9411578-UTR-H-paniculata_contig8674:2810..4261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 2811..4261 +
1622931089.229954-UTR-H-paniculata_contig8674:5226..59681622931089.229954-UTR-H-paniculata_contig8674:5226..5968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 5227..5968 +
1691481584.9791968-UTR-H-paniculata_contig8674:5226..59681691481584.9791968-UTR-H-paniculata_contig8674:5226..5968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 5227..5968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.1938772-CDS-H-paniculata_contig8674:4261..44381622931089.1938772-CDS-H-paniculata_contig8674:4261..4438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 4262..4438 +
1691481584.9580529-CDS-H-paniculata_contig8674:4261..44381691481584.9580529-CDS-H-paniculata_contig8674:4261..4438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 4262..4438 +
1622931089.2140903-CDS-H-paniculata_contig8674:5052..52261622931089.2140903-CDS-H-paniculata_contig8674:5052..5226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 5053..5226 +
1691481584.9694893-CDS-H-paniculata_contig8674:5052..52261691481584.9694893-CDS-H-paniculata_contig8674:5052..5226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 5053..5226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8674.16615.1

>prot_H-paniculata_contig8674.16615.1 ID=prot_H-paniculata_contig8674.16615.1|Name=mRNA_H-paniculata_contig8674.16615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVH
LIVDEGYHRWRSLVCPAKEAATREELAWSTRLESVRKDVECISDILKGRF
RISKLPSLSFQGVRSG*
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mRNA from alignment at H-paniculata_contig8674:2811..5968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8674.16615.1 ID=mRNA_H-paniculata_contig8674.16615.1|Name=mRNA_H-paniculata_contig8674.16615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3158bp|location=Sequence derived from alignment at H-paniculata_contig8674:2811..5968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTTTCTTCCACCATACAGTGGTGCCTCAGTTGTGCTCTGCTGTACAGA CGGTAAGATCTGTGTCTGTCACTGTGCATGACAGAAGTCGTCCTCCAATT TACAGTTGAGTAGAACTGTGATGATGCGAAGCTAACTTGTATTGTACGTT ACTGTAATTTCTGGCCTCATCCCTGTGCAGTACAACCTGTACTATCTTCG AACATACCGTGGTACAAAAGGTATGACCCTGCGAAGCTGCAGTACATCGA ATATATGATGGTAGTGACCACAATAATAATAAAAATAACGTTATTTTTGA AGAGAATTTTCGTCATTTCCCCACCAAAGGCTGCCGAATCAGGCAGGGTG CGGGGGATACAAATTGAAGCACTGCACCGTCTCGACAACATGCCATTGAA AAAATTCAAATTGGGCAACATTCAGTCATCAAAGAAGTTCAAGGTAATCG TTAAAAAACGTGGTATTTATTAGTGGCCATTGTAAATGTTGTATTGTCTC TTTTTTCGTGTCGGTAAGGGGTGCTGCTTACACCTGTCGAGAATCGTTGT TTCGTCATTAGCTTTGCTGAGCAAAGAATATCCGGACCACCCAGTTGACG CGATGAGCTTGTACCTTAAGCATGACGCGCGATGCAATACAGGATCCCCC TAAATTGTAATCGTATTGTATTTTGTTCGATTTTGCTGTGGGTGCATTAG ACGCTTTAGTTCTCGTTTATTGGTAAGTTGGATGGGTTACCGTGTTCAAT TTACCTCTTGTCGTGGTCCTTGTCTCTCACGAGGTTACACTGTCAGAAGG TGAATTACGGTTTGTACACAATCGTAACACACCGCGAAAGAAAATCCCAG GATAACAGTCGCGGTGGATTGGCTTCCGTAGGGGTGTCTTAGGCCCATCG AAACAGTGCCACCTCGCCTTGCTGAGGGCGATTGGTCTTGGATAAGCCGA GGTGCGTCTTCGCAAGTATTCGTTTTCAGTGAGGCCATCGCACTGGGAAC ATGAGCGTCGTCAGCCAATTTTCTGCCTAATAATATTTTGTAATCCCAGC CGCCGTCAGTACGGCCAAGTGCTTCATACGATTCCGTAACCCCTACCGTC GCGGCGCTACTACAGGTTCTGGCGAGCTTGCAGATTCTGGAGAGAGGGAA TAGCTTCGATGATATCGGCCAGCTCTCCTTGATAAGCGAGTCGACTGCCC AAAGTGCGTTCCATACATTTTGCAAGCGTTTCGCTTAAGATCTTTTTCAT GAGTTGATTAAACCCCCTACCGAGGAGACCCTCGCAGCCACAATGAAGCC GTACGATGCGGTGGGCTTTACAGGGTAAGTAGACTCGACCGCATGAGGTT GCATCCCGGTGTCACATACTGATCTCTACACGGACAAGGAAGGATTCCCG ACTCTTGCCTACGAGGCAACGGTAGACCACTCGGGGCGGGTACTTGGGAT AATGAAGGAAATGGCCGGAGCAATGAACGATAGATCCATGGTTCGTTTCG ACAAGACATTACAAGCGGCCAGGGAGGGTGAGCCGTACAGGTCGATGGCT TACAAGCTCCGCGATAAGGATGGCGTGGAACAGATGGAGAAGGGTGTTCA CCTCATCGTCGACGAAGGATATCACCGGGTGAGTCAAGTGCTGTTGTTTG ATGGTCATTGCTGCTGGACTACCGTACAGAAATGCGTTTTATAGTTTTAC ATCATACGGCGACAATTTCTTTGTTTCTTACAAGCATACAATTGTACCCC GTTTAGTGTTGTGTATCAACCACACCCCGCCTGCGATGTCCAACTTCGTT GATATCAACTTAAACGGCTGCCTGAGGTCCCACTTTGTGAGCCGCAATTC TAGACTCACGGTACGTTCGTTTCAAATATTACCAGCAGACGAGGTGCAAA CTAGGAGACAGCAAGCTTCCTTGACATAAGTAGCAGCTACGCGAAATCCG TAGGTCGCATCTTGTGGCGTATCTTGTTAAAGCGCAGGCCATGCCACCGT TGACAAGGAATTTGCTAGGATGATAAGACGCTTTTGTGTCTTTTTTCATG GTTGATTTCAACCGTCAGTGTTGTTGAATGTCGTCTTCAGCTTCAATTTT CTCTATCGCCGATTGATCATTGATCAAGGCTGAGATAAATCGTACGAGCT GGGCGTTTCAATATCTCACACGGTTGGTCAGACACCGCATAAGAACAACG TGTATCGACATGACTGTTTTCTCGTTTCCCTCTTGTTTGCAGTGGAGGAG TCTAGTGTGCCCGGCAAAAGAAGCTGCAACTAGAGAGGAATTAGCGTGGA GTACACGTCTCGAGAGCGTTCGAAAGGACGTCGAATGCATCTCCGACATT CTCAAGGGCCGCTTCAGAATTTCGAAGCTGCCCAGTCTTTCTTTTCAGGG AGTCCGCTCAGGTTGACAATGTGGTGGTTTGGACATGCAGTAAGTACCCT TGACAGCATGCTGCATTCGTTCGACGAAATGAAGTTGCACGAGCCGGACA TGATGAACTGGGCCGGGCGGGATGGCTTCCTTGGCGCGTGGCTTCACGTA GAGCGCACAACTGAACTTTAGCACGAACGGGCCGCCAGAGCGCGTCGAAG TCGAGGACATCTTTTTTCACCATGGAAGGAGGCTAGTCACGTATTACACG TACAGGGTGAACAACGTGGGAGTGGCTTGGCTGAGGTCGCAATCTGGCCA GAAATGATTTGAGCGTGTAGATTGGGCATGGTGTTGTGTGTGTGCGATTT TCGTGTGTCGTGACGATTTATGTTGTGACGTTTGAGAGTTTTGTTGGCAG GATGAGCTGTAGCAAGCGATGTGATTGTCGGCCATCTTGGACGAATGGCA AGTGGGCACGAAATAATCGCCACAGCATTTTTGCTAGGCATGATATGGCC CGCTCTGACTTTTCATGATATCATGACTAATTTTGCTGGGGTGATGGCCG TATGAAAATTCAAGTCTTTTCCCCTGTAAGCAGTAGAGACTTGTTGAGAC GACTGTGTATCGAAGTGGTTCATGAAATATATTATACATACATCGAGCGC TACTGTACAGCTAGTGATTGACGGAATAATTGACCTGTGCTTGGTTAGCA CATGACACGGGTGCCTTTGGAAAAATATGGCAAGCAAGAGATATCCCCAT TGAGCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig8674:2811..5968+

>mRNA_H-paniculata_contig8674.16615.1 ID=mRNA_H-paniculata_contig8674.16615.1|Name=mRNA_H-paniculata_contig8674.16615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig8674:2811..5968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAAATGGCCGGAGCAATGAACGATAGATCCATGGTTCGTTTCGA
CAAGACATTACAAGCGGCCAGGGAGGGTGAGCCGTACAGGTCGATGGCTT
ACAAGCTCCGCGATAAGGATGGCGTGGAACAGATGGAGAAGGGTGTTCAC
CTCATCGTCGACGAAGGATATCACCGGATGAAGGAAATGGCCGGAGCAAT
GAACGATAGATCCATGGTTCGTTTCGACAAGACATTACAAGCGGCCAGGG
AGGGTGAGCCGTACAGGTCGATGGCTTACAAGCTCCGCGATAAGGATGGC
GTGGAACAGATGGAGAAGGGTGTTCACCTCATCGTCGACGAAGGATATCA
CCGGTGGAGGAGTCTAGTGTGCCCGGCAAAAGAAGCTGCAACTAGAGAGG
AATTAGCGTGGAGTACACGTCTCGAGAGCGTTCGAAAGGACGTCGAATGC
ATCTCCGACATTCTCAAGGGCCGCTTCAGAATTTCGAAGCTGCCCAGTCT
TTCTTTTCAGGGAGTCCGCTCAGGTTGATGGAGGAGTCTAGTGTGCCCGG
CAAAAGAAGCTGCAACTAGAGAGGAATTAGCGTGGAGTACACGTCTCGAG
AGCGTTCGAAAGGACGTCGAATGCATCTCCGACATTCTCAAGGGCCGCTT
CAGAATTTCGAAGCTGCCCAGTCTTTCTTTTCAGGGAGTCCGCTCAGGTT
GA
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